FvH4_3g35121

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000578
Physical Location & Seq
Forward (+)
30324804 .. 30331769
6966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35121.t2

Sequence Viewer

Length: 561 bp
ATGGGTATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGTCTTCGAGGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTCGGGAGATCCAGACTGCTGTGAGGCTTGTGCTTCCTGCTGAGAAGAAGCCCGCCGAGAAGAAGCCGGCAGAGAAGACCGTGGCGGAGAAAGCCCCGGCGGAGAAGAAACCCAAGGCCGGAAAGAAGCTCCCCAAGGAGGCCGGAGCCGCCGCCGGAGACAAGAAGAAGAAGAGGAACAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTCCACCCTGACATTGGGATCTCCAGCAAGGCCATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGTCGTCTAAGCTCGCCAGATACAACAAGAAGCCGACGATTACTTCTCGGGAGATCCAGACCGCTGTGAGGCTTGTGCTTCCTGGTGAATTGGCCAAGCACGCCGTCTCTGAGGGGACTAAGGCGGTGACCAAGTTCACCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

187

Amino Acids

20.61

Weight (kDa)

10.09

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 45 - 121 2e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 75 - 144 4.2e-07 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 316
AciI CCGC 7 cut(s) 150, 182, 197, 246, 249, 474, 536
AclWI GGATC 3 cut(s) 100, 353, 460
AcoI YGGCCR 1 cut(s) 504
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 5 cut(s) 215, 235, 325, 341, 480
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 7 cut(s) 18, 43, 226, 378, 403, 424, 555
AluI AGCT 7 cut(s) 18, 43, 226, 378, 403, 424, 555
Alw26I GTCTC 3 cut(s) 249, 284, 523
AlwI GGATC 3 cut(s) 100, 353, 460
Ama87I CYCGRG 2 cut(s) 99, 459
AoxI GGCC 4 cut(s) 213, 237, 357, 504
Asp700I GAANNNNTTC 2 cut(s) 17, 377
AspS9I GGNCC 2 cut(s) 316, 328
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 509, 541, 550
AvaI CYCGRG 2 cut(s) 99, 459
AvaII GGWCC 2 cut(s) 316, 328
BalI TGGCCA 1 cut(s) 506
BbsI GAAGAC 2 cut(s) 48, 179
BceAI ACGGC 1 cut(s) 500
BciT130I CCWGG 1 cut(s) 495
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 3 cut(s) 249, 284, 523
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 300
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
Bme1390I CCNGG 2 cut(s) 194, 495
Bme18I GGWCC 2 cut(s) 316, 328
BmeT110I CYCGRG 2 cut(s) 99, 459
BmgT120I GGNCC 2 cut(s) 316, 328
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 2 cut(s) 194, 495
BmsI GCATC 1 cut(s) 375
BpiI GAAGAC 2 cut(s) 48, 179
BpmI CTGGAG 1 cut(s) 334
Bpu10I CCTNAGC 2 cut(s) 48, 408
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 5 cut(s) 177, 192, 210, 231, 360
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 235, 325, 341, 480
Bse118I RCCGGY 1 cut(s) 163
Bse8I GATNNNNATC 1 cut(s) 305
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 5 cut(s) 177, 192, 210, 231, 360
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 5 cut(s) 215, 235, 325, 341, 480
BseMII CTCAG 4 cut(s) 62, 129, 422, 513
BshFI GGCC 4 cut(s) 215, 239, 359, 506
BsiHKCI CYCGRG 2 cut(s) 99, 459
BsiSI CCGG 5 cut(s) 164, 194, 216, 240, 252
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 5 cut(s) 215, 235, 325, 341, 480
BsmAI GTCTC 3 cut(s) 249, 284, 523
BsmBI CGTCTC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 4 cut(s) 215, 239, 359, 506
Bso31I GGTCTC 1 cut(s) 284
BsoBI CYCGRG 2 cut(s) 99, 459
Bsp143I GATC 4 cut(s) 105, 300, 345, 465
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 7 cut(s) 150, 182, 197, 246, 249, 474, 536
BspANI GGCC 4 cut(s) 215, 239, 359, 506
BspCNI CTCAG 4 cut(s) 61, 130, 421, 514
BspHI TCATGA 2 cut(s) 9, 369
BspLI GGNNCC 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 3 cut(s) 100, 353, 460
BspQI GCTCTTC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 163
BssECI CCNNGG 5 cut(s) 177, 192, 210, 231, 360
BssMI GATC 4 cut(s) 105, 300, 345, 465
BssT1I CCWWGG 3 cut(s) 210, 231, 360
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 263, 275
BstC8I GCNNGC 7 cut(s) 45, 66, 150, 165, 405, 426, 513
BstDEI CTNAG 6 cut(s) 48, 138, 408, 420, 522, 531
BstDSI CCRYGG 2 cut(s) 177, 360
BstEII GGTNACC 1 cut(s) 538
BstENI CCTNNNNNAGG 1 cut(s) 323
BstKTI GATC 4 cut(s) 108, 303, 348, 468
BstMAI GTCTC 3 cut(s) 249, 284, 523
BstMBI GATC 4 cut(s) 105, 300, 345, 465
BstMWI GCNNNNNNNGC 3 cut(s) 188, 245, 512
BstNI CCWGG 1 cut(s) 495
BstPI GGTNACC 1 cut(s) 538
BstSCI CCNGG 2 cut(s) 192, 493
BstV2I GAAGAC 2 cut(s) 48, 179
BstX2I RGATCY 4 cut(s) 105, 300, 345, 465
BstYI RGATCY 4 cut(s) 105, 300, 345, 465
BsuRI GGCC 4 cut(s) 215, 239, 359, 506
BtgI CCRYGG 2 cut(s) 177, 360
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 7 cut(s) 45, 66, 150, 165, 405, 426, 513
CciI TCATGA 2 cut(s) 9, 369
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 316, 328
Csp6I GTAC 1 cut(s) 73
CviAII CATG 3 cut(s) 10, 361, 370
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 6 cut(s) 48, 138, 408, 420, 522, 531
DpnI GATC 4 cut(s) 107, 302, 347, 467
DpnII GATC 4 cut(s) 105, 300, 345, 465
EaeI YGGCCR 1 cut(s) 504
Eam1104I CTCTTC 2 cut(s) 263, 275
EarI CTCTTC 2 cut(s) 263, 275
EciI GGCGGA 2 cut(s) 197, 212
Eco130I CCWWGG 3 cut(s) 210, 231, 360
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 316, 328
Eco88I CYCGRG 2 cut(s) 99, 459
Eco91I GGTNACC 1 cut(s) 538
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 316
EcoO65I GGTNACC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 3 cut(s) 210, 231, 360
ErhI CCWWGG 3 cut(s) 210, 231, 360
Esp3I CGTCTC 1 cut(s) 523
FaeI CATG 3 cut(s) 13, 364, 373
FaiI YATR 3 cut(s) 11, 362, 371
FaqI GGGAC 1 cut(s) 541
FatI CATG 3 cut(s) 9, 360, 369
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 246, 249
Fsp4HI GCNGC 2 cut(s) 246, 249
GluI GCNGC 2 cut(s) 246, 249
GsuI CTGGAG 1 cut(s) 334
HaeIII GGCC 4 cut(s) 215, 239, 359, 506
HapII CCGG 5 cut(s) 164, 194, 216, 240, 252
Hin1II CATG 3 cut(s) 13, 364, 373
HinfI GANTC 2 cut(s) 53, 413
HpaII CCGG 5 cut(s) 164, 194, 216, 240, 252
HphI GGTGA 3 cut(s) 509, 541, 550
Hpy166II GTNNAC 2 cut(s) 331, 549
Hpy188I TCNGA 1 cut(s) 523
Hpy8I GTNNAC 2 cut(s) 331, 549
Hpy99I CGWCG 2 cut(s) 91, 451
HpyCH4III ACNGT 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 245, 512
HpyF3I CTNAG 6 cut(s) 48, 138, 408, 420, 522, 531
Hsp92II CATG 3 cut(s) 13, 364, 373
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Kzo9I GATC 4 cut(s) 105, 300, 345, 465
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 2 cut(s) 231, 242
LweI GCATC 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 538
MalI GATC 4 cut(s) 107, 302, 347, 467
MboI GATC 4 cut(s) 105, 300, 345, 465
MflI RGATCY 4 cut(s) 105, 300, 345, 465
MlsI TGGCCA 1 cut(s) 506
MluCI AATT 1 cut(s) 500
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 2 cut(s) 62, 422
MnlI CCTC 8 cut(s) 54, 63, 114, 229, 264, 329, 474, 517
Mox20I TGGCCA 1 cut(s) 506
MroNI GCCGGC 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 17, 377
MscI TGGCCA 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 506
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 5 cut(s) 164, 194, 216, 240, 252
MspR9I CCNGG 2 cut(s) 194, 495
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 3 cut(s) 188, 245, 512
NaeI GCCGGC 1 cut(s) 165
NciI CCSGG 1 cut(s) 194
NcoI CCATGG 1 cut(s) 360
NdeII GATC 4 cut(s) 105, 300, 345, 465
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 3 cut(s) 13, 364, 373
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 538
PagI TCATGA 2 cut(s) 9, 369
PciSI GCTCTTC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 65, 393
PdiI GCCGGC 1 cut(s) 165
PdmI GAANNNNTTC 2 cut(s) 17, 377
PkrI GCNGC 2 cut(s) 247, 250
PleI GAGTC 2 cut(s) 61, 421
PpsI GAGTC 2 cut(s) 61, 421
PpuMI RGGWCCY 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 493
PspEI GGTNACC 1 cut(s) 538
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 316, 328
PspPPI RGGWCCY 1 cut(s) 316
PsuI RGATCY 4 cut(s) 105, 300, 345, 465
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 275
SatI GCNGC 2 cut(s) 246, 249
Sau3AI GATC 4 cut(s) 105, 300, 345, 465
Sau96I GGNCC 2 cut(s) 316, 328
SchI GAGTC 2 cut(s) 62, 422
ScrFI CCNGG 2 cut(s) 194, 495
SfaNI GCATC 1 cut(s) 375
SinI GGWCC 2 cut(s) 316, 328
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 1 cut(s) 500
SsiI CCGC 7 cut(s) 150, 182, 197, 246, 249, 474, 536
StyD4I CCNGG 2 cut(s) 192, 493
StyI CCWWGG 3 cut(s) 210, 231, 360
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 3 cut(s) 36, 59, 396
TasI AATT 1 cut(s) 500
TauI GCSGC 2 cut(s) 248, 251
TseFI GTSAC 1 cut(s) 538
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 4 cut(s) 10, 26, 370, 386
VpaK11BI GGWCC 2 cut(s) 316, 328
XagI CCTNNNNNAGG 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 2 cut(s) 338, 358
XmnI GAANNNNTTC 2 cut(s) 17, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.