Rorug05G0357800

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000578
Physical Location & Seq
Forward (+)
45341629 .. 45342302
674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0357800.1

Sequence Viewer

Length: 351 bp
ATGCGAAGCTGCAAAGGGCACAGCGCCGCGTTGATTGAAGACCGCCGGATCTCTTTACACATTATGATTGAGTGTGAATTATCTGGGAAATGCAGAAGGTTGGTGGCTGAAATAGTGTTATCAACAGGAAAGACGAAAGCAGTGGATGGAATTGGATTTGGGACATTAACGAAGATAGGGTGCACAAAATTGAACTGGGAGATATGCCAAATGTTGGTTGACAACTTTGAGGTGAAAAAGGAAGGCTATTGTATCAAAATTCAGGGGACATCTGTGTCAAATCGAGATAGTGACTTTGAGCGCGTGATGGGAGTGAGGAACGGTGGATCAGCTGTAGAACTAGATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

116

Amino Acids

12.72

Weight (kDa)

8.24

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
AccB7I CCANNNNNTGG 1 cut(s) 214
AccII CGCG 2 cut(s) 29, 303
AciI CCGC 2 cut(s) 27, 43
AclWI GGATC 2 cut(s) 56, 334
AcsI RAATTY 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 38, 193
AluBI AGCT 2 cut(s) 9, 332
AluI AGCT 2 cut(s) 9, 332
Alw21I GWGCWC 1 cut(s) 185
Alw44I GTGCAC 1 cut(s) 181
AlwI GGATC 2 cut(s) 56, 334
ApaLI GTGCAC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 258
AspLEI GCGC 2 cut(s) 26, 303
AsuHPI GGTGA 1 cut(s) 244
BaeGI GKGCMC 2 cut(s) 21, 185
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 185
BccI CCATC 3 cut(s) 140, 301, 338
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 2 cut(s) 10, 27
BlsI GCNGC 2 cut(s) 11, 28
BmrI ACTGGG 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 200
BseSI GKGCMC 2 cut(s) 21, 185
Bsh1236I CGCG 2 cut(s) 29, 303
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 46
BslFI GGGAC 2 cut(s) 175, 280
BslI CCNNNNNNNGG 1 cut(s) 214
BsmFI GGGAC 2 cut(s) 175, 280
Bsp1286I GDGCHC 2 cut(s) 21, 185
Bsp143I GATC 2 cut(s) 48, 326
BspACI CCGC 2 cut(s) 27, 43
BspFNI CGCG 2 cut(s) 29, 303
BspPI GGATC 2 cut(s) 56, 334
BsrI ACTGG 1 cut(s) 200
BssMI GATC 2 cut(s) 48, 326
Bst4CI ACNGT 1 cut(s) 323
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 2 cut(s) 29, 303
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 2 cut(s) 26, 303
BstKTI GATC 2 cut(s) 51, 329
BstMBI GATC 2 cut(s) 48, 326
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 2 cut(s) 21, 185
BstUI CGCG 2 cut(s) 29, 303
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
CfoI GCGC 2 cut(s) 26, 303
CviJI RGCY 4 cut(s) 9, 107, 246, 332
CviKI_1 RGCY 4 cut(s) 9, 107, 246, 332
DpnI GATC 2 cut(s) 50, 328
DpnII GATC 2 cut(s) 48, 326
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
FaiI YATR 2 cut(s) 65, 205
FaqI GGGAC 2 cut(s) 175, 280
Fnu4HI GCNGC 2 cut(s) 10, 27
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 10, 27
FspBI CTAG 1 cut(s) 341
GlaI GCGC 2 cut(s) 25, 302
GluI GCNGC 2 cut(s) 10, 27
HaeII RGCGCY 1 cut(s) 27
HapII CCGG 1 cut(s) 46
HhaI GCGC 2 cut(s) 26, 303
Hin6I GCGC 2 cut(s) 24, 301
HinP1I GCGC 2 cut(s) 24, 301
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 183, 220
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 2 cut(s) 183, 220
HpyAV CCTTC 2 cut(s) 90, 236
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 3 cut(s) 12, 93, 183
HspAI GCGC 2 cut(s) 24, 301
Kzo9I GATC 2 cut(s) 48, 326
LpnPI CCDG 5 cut(s) 59, 69, 111, 181, 248
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 50, 328
MboI GATC 2 cut(s) 48, 326
MboII GAAGA 2 cut(s) 50, 184
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 2 cut(s) 21, 185
MluCI AATT 4 cut(s) 77, 150, 188, 258
MnlI CCTC 2 cut(s) 223, 309
MseI TTAA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 46
MvnI CGCG 2 cut(s) 29, 303
NdeII GATC 2 cut(s) 48, 326
NmuCI GTSAC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 2 cut(s) 11, 28
PsuI RGATCY 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 332
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 2 cut(s) 10, 27
Sau3AI GATC 2 cut(s) 48, 326
SduI GDGCHC 2 cut(s) 21, 185
SetI ASST 4 cut(s) 11, 101, 234, 334
SfcI CTRYAG 1 cut(s) 333
SgeI CNNG 9 cut(s) 40, 58, 96, 138, 208, 275, 296, 314, 316
Sse9I AATT 4 cut(s) 77, 150, 188, 258
SsiI CCGC 2 cut(s) 27, 43
SspMI CTAG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 283
TasI AATT 4 cut(s) 77, 150, 188, 258
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 290
TspRI CASTG 1 cut(s) 147
Van91I CCANNNNNTGG 1 cut(s) 214
VneI GTGCAC 1 cut(s) 181
XapI RAATTY 1 cut(s) 258
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.