Rorug05G0354700

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000578
Physical Location & Seq
Reverse (-)
44337602 .. 44339388
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0354700.1

Sequence Viewer

Length: 444 bp
ATGGGTTTTCAGTTGAAGTATCGGGCTCGTGGTCAACTGATCTTGCTCTTGGAGACTTGGTTCGATTCAGAAATTTTCAAGCTTGGATACAAGAGTATGTTGAAGCTGCAAGCTTCTGTCATCAATTCTGGAGTGAGAGATAAAGAAGGGATTCCTGCGTTGGAAGATGTCAAACTGGATGAACGAGTAAACCCCAAGAAAGAAGTTGCTGATTACAGAACTGTTATTACAGGAATGTATGCTGCAGATTCGGCTGGTGTTACATGTACTTTAGCTGATATACAGAAATCCTTCAAGAAGTTGTTGTCAGATGGAACTATTTTAGTTGGACACAGTTTGAATAATGACCTGCAGGCATTGAAGATAGACCATATATTAATGGTGATTGATACCGCATATGTATTTAGATATTTGGATGGGCCTATTTGTAGAAACCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

147

Amino Acids

16.5

Weight (kDa)

7.73

Isoelectric Point (pI)

19.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 357
AciI CCGC 1 cut(s) 393
AcsI RAATTY 1 cut(s) 72
AfaI GTAC 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 6 cut(s) 16, 79, 103, 295, 340, 361
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
AluBI AGCT 4 cut(s) 82, 106, 113, 275
AluI AGCT 4 cut(s) 82, 106, 113, 275
Alw26I GTCTC 1 cut(s) 47
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 2 cut(s) 106, 242
ApoI RAATTY 1 cut(s) 72
AseI ATTAAT 1 cut(s) 377
Asp700I GAANNNNTTC 2 cut(s) 150, 290
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 394
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BanII GRGCYC 1 cut(s) 28
BauI CACGAG 1 cut(s) 27
BbvI GCAGC 2 cut(s) 93, 229
BccI CCATC 2 cut(s) 305, 410
BciVI GTATCC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 243, 350
BfuAI ACCTGC 1 cut(s) 357
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 2 cut(s) 107, 243
BlsI GCNGC 2 cut(s) 108, 244
BmgT120I GGNCC 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bse1I ACTGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 184, 421
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 93, 229
BshFI GGCC 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 421
BspMAI CTGCAG 2 cut(s) 247, 354
BspMI ACCTGC 1 cut(s) 357
BsrI ACTGG 1 cut(s) 180
BssMI GATC 1 cut(s) 39
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 223, 335
BstC8I GCNNGC 2 cut(s) 111, 354
BstF5I GGATG 2 cut(s) 184, 421
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 267
BstSFI CTRYAG 2 cut(s) 243, 350
BstV1I GCAGC 2 cut(s) 93, 229
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 421
BtsCI GGATG 2 cut(s) 184, 421
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 111, 354
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 267
CviAII CATG 1 cut(s) 264
CviJI RGCY 7 cut(s) 26, 82, 106, 113, 254, 275, 421
CviKI_1 RGCY 7 cut(s) 26, 82, 106, 113, 254, 275, 421
CviQI GTAC 1 cut(s) 267
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 28
FaeI CATG 1 cut(s) 267
FaiI YATR 8 cut(s) 98, 240, 265, 281, 372, 374, 397, 399
FatI CATG 1 cut(s) 263
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 107, 243
FokI GGATG 2 cut(s) 191, 428
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 107, 243
GluI GCNGC 2 cut(s) 107, 243
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 421
Hin1II CATG 1 cut(s) 267
HincII GTYRAC 1 cut(s) 35
HindII GTYRAC 1 cut(s) 35
HindIII AAGCTT 2 cut(s) 80, 111
HinfI GANTC 3 cut(s) 65, 151, 248
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 35, 190
Hpy188I TCNGA 2 cut(s) 70, 310
Hpy188III TCNNGA 2 cut(s) 129, 295
Hpy8I GTNNAC 2 cut(s) 35, 190
HpyAV CCTTC 2 cut(s) 140, 301
HpyCH4III ACNGT 2 cut(s) 223, 335
HpyCH4V TGCA 3 cut(s) 109, 245, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 267
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 7 cut(s) 114, 161, 168, 216, 240, 338, 362
Lsp1109I GCAGC 2 cut(s) 93, 229
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 2 cut(s) 176, 373
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 72, 124
MmeI TCCRAC 2 cut(s) 141, 307
MroXI GAANNNNTTC 2 cut(s) 150, 290
MseI TTAA 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeI CATATG 1 cut(s) 397
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 267
NspI RCATGY 1 cut(s) 267
PciI ACATGT 1 cut(s) 263
PdmI GAANNNNTTC 2 cut(s) 150, 290
PfeI GAWTC 3 cut(s) 65, 151, 248
PkrI GCNGC 2 cut(s) 108, 244
PscI ACATGT 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 377
PspPI GGNCC 1 cut(s) 419
PsrI GAACNNNNNNTAC 2 cut(s) 211, 243
PstI CTGCAG 2 cut(s) 247, 354
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 2 cut(s) 107, 243
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 419
SbfI CCTGCAGG 1 cut(s) 354
SdaI CCTGCAGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 28
SetI ASST 6 cut(s) 84, 108, 115, 277, 351, 438
SfcI CTRYAG 2 cut(s) 243, 350
Sse8387I CCTGCAGG 1 cut(s) 354
Sse9I AATT 2 cut(s) 72, 124
SsiI CCGC 1 cut(s) 393
TaaI ACNGT 2 cut(s) 223, 335
TaqI TCGA 1 cut(s) 63
TasI AATT 2 cut(s) 72, 124
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 3 cut(s) 65, 151, 248
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TseI GCWGC 2 cut(s) 106, 242
TspDTI ATGAA 1 cut(s) 195
VspI ATTAAT 1 cut(s) 377
XapI RAATTY 1 cut(s) 72
XceI RCATGY 1 cut(s) 267
XmnI GAANNNNTTC 2 cut(s) 150, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.