Prupe.6G082700_v2.0.a1

histone H2B.1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000578
Physical Location & Seq
Reverse (-)
5570551 .. 5574471
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G082700.5

Sequence Viewer

Length: 447 bp
ATGGCGCCCAAGGCTGAGAAGAAGCCTGCCGAGAAGAAGCCTGCTGAGGAGAAGAAGTCCACAGTGGCTGAGAAAGCCCCGGCGGAGAAGAAGCCCAAGGCCGGCAAGAAGCTCCCGAAGGAAGCCGGAGCCGCCGCCGGAGATAAGAAGAAGAAGAGATCGAAGAAGAGCGTAGAGACCTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTCCACCCTGATATCGGAATCTCCAGCAAGGCCATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGTCTTCGAAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTGAGGCTTGTGCTTCCCGGTGAGCTCGCCAAGCACGCCGTTTCTGAAGGGACCAAGGCGGTGACCAAGTTTACAAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

149

Amino Acids

16.19

Weight (kDa)

10.05

Isoelectric Point (pI)

28.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 4 cut(s) 83, 132, 135, 422
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 101, 227
AgsI TTSAA 2 cut(s) 199, 208
AluBI AGCT 6 cut(s) 112, 264, 289, 310, 388, 441
AluI AGCT 6 cut(s) 112, 264, 289, 310, 388, 441
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 2 cut(s) 99, 243
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 214, 414
AsuC2I CCSGG 2 cut(s) 80, 381
AsuHPI GGTGA 2 cut(s) 395, 436
AsuII TTCGAA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 345
AvaII GGWCC 2 cut(s) 214, 414
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 386
BcnI CCSGG 2 cut(s) 80, 381
BcoDI GTCTC 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 202
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 132, 135
BlsI GCNGC 2 cut(s) 133, 136
Bme1390I CCNGG 2 cut(s) 80, 381
Bme18I GGWCC 2 cut(s) 214, 414
BmeT110I CYCGRG 1 cut(s) 345
BmgT120I GGNCC 2 cut(s) 214, 414
BmiI GGNNCC 3 cut(s) 6, 130, 415
BmrFI CCNGG 2 cut(s) 80, 381
BmsI GCATC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 220
Bpu10I CCTNAGC 2 cut(s) 45, 294
Bpu14I TTCGAA 1 cut(s) 305
BpuMI CCSGG 2 cut(s) 80, 381
BsaBI GATNNNNATC 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 5 cut(s) 9, 78, 96, 246, 417
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 227
Bse118I RCCGGY 1 cut(s) 101
Bse8I GATNNNNATC 1 cut(s) 191
BseDI CCNNGG 5 cut(s) 9, 78, 96, 246, 417
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 2 cut(s) 101, 227
BseMII CTCAG 4 cut(s) 6, 36, 60, 308
BseRI GAGGAG 1 cut(s) 62
BshFI GGCC 2 cut(s) 101, 245
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 5 cut(s) 80, 102, 126, 138, 381
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 2 cut(s) 101, 227
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 2 cut(s) 101, 245
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 345
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 2 cut(s) 158, 186
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 4 cut(s) 83, 132, 135, 422
BspANI GGCC 2 cut(s) 101, 245
BspCNI CTCAG 4 cut(s) 7, 37, 61, 307
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 6, 130, 415
BspMI ACCTGC 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 5 cut(s) 9, 78, 96, 246, 417
BssMI GATC 2 cut(s) 158, 186
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 9, 96, 246, 417
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 2 cut(s) 149, 161
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 7 cut(s) 27, 42, 103, 291, 312, 390, 399
BstDEI CTNAG 4 cut(s) 15, 45, 69, 294
BstDSI CCRYGG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 161, 189
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 158, 186
BstMWI GCNNNNNNNGC 5 cut(s) 11, 74, 131, 394, 398
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 78, 379
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 2 cut(s) 101, 245
BtgI CCRYGG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 7 cut(s) 27, 42, 103, 291, 312, 390, 399
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 1 cut(s) 255
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 214, 414
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 247, 256
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 15, 45, 69, 294
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 160, 188
DpnII GATC 2 cut(s) 158, 186
Eam1104I CTCTTC 2 cut(s) 149, 161
EarI CTCTTC 2 cut(s) 149, 161
EciI GGCGGA 1 cut(s) 98
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 4 cut(s) 9, 96, 246, 417
Eco24I GRGCYC 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 170
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 214, 414
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 345
Eco91I GGTNACC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 388
EcoO65I GGTNACC 1 cut(s) 424
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 4 cut(s) 9, 96, 246, 417
EcoT38I GRGCYC 1 cut(s) 390
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 4 cut(s) 9, 96, 246, 417
FaeI CATG 2 cut(s) 250, 259
FaiI YATR 2 cut(s) 248, 257
FaqI GGGAC 1 cut(s) 427
FatI CATG 2 cut(s) 246, 255
Fnu4HI GCNGC 2 cut(s) 132, 135
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 132, 135
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 132, 135
GsuI CTGGAG 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 101, 245
HapII CCGG 5 cut(s) 80, 102, 126, 138, 381
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 250, 259
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 3 cut(s) 231, 299, 352
HpaII CCGG 5 cut(s) 80, 102, 126, 138, 381
HphI GGTGA 2 cut(s) 395, 436
Hpy166II GTNNAC 3 cut(s) 60, 217, 435
Hpy188I TCNGA 3 cut(s) 230, 357, 409
Hpy188III TCNNGA 6 cut(s) 115, 256, 283, 296, 347, 444
Hpy8I GTNNAC 3 cut(s) 60, 217, 435
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 112, 404
HpyCH4III ACNGT 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 74, 131, 394, 398
HpyF3I CTNAG 4 cut(s) 15, 45, 69, 294
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 250, 259
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 158, 186
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 2 cut(s) 117, 128
LweI GCATC 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 424
MalI GATC 2 cut(s) 160, 188
MboI GATC 2 cut(s) 158, 186
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 390
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 3 cut(s) 40, 309, 360
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 263
MspI CCGG 5 cut(s) 80, 102, 126, 138, 381
MspR9I CCNGG 2 cut(s) 80, 381
MwoI GCNNNNNNNGC 5 cut(s) 11, 74, 131, 394, 398
NaeI GCCGGC 1 cut(s) 103
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 80, 381
NcoI CCATGG 1 cut(s) 246
NdeII GATC 2 cut(s) 158, 186
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 2 cut(s) 250, 259
NlaIV GGNNCC 3 cut(s) 6, 130, 415
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 424
NspV TTCGAA 1 cut(s) 305
PagI TCATGA 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 311
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 231, 352
PkrI GCNGC 2 cut(s) 133, 136
PleI GAGTC 1 cut(s) 307
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 390
PspEI GGTNACC 1 cut(s) 424
PspN4I GGNNCC 3 cut(s) 6, 130, 415
PspPI GGNCC 2 cut(s) 214, 414
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 161
SatI GCNGC 2 cut(s) 132, 135
Sau3AI GATC 2 cut(s) 158, 186
Sau96I GGNCC 2 cut(s) 214, 414
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 80, 381
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 1 cut(s) 261
SfoI GGCGCC 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 2 cut(s) 214, 414
SsiI CCGC 4 cut(s) 83, 132, 135, 422
SspDI GGCGCC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 78, 379
StyI CCWWGG 4 cut(s) 9, 96, 246, 417
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 3 cut(s) 161, 282, 305
TauI GCSGC 2 cut(s) 134, 137
TfiI GAWTC 2 cut(s) 231, 352
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 256, 272
TspRI CASTG 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 214, 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.