Rh5DG445600

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000578
Physical Location & Seq
Forward (+)
71184586 .. 71187049
2464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG445600.1

Sequence Viewer

Length: 441 bp
ATGGCGCCAAAAGCTGAGAAGAAGCCCGCCGAGAAGAAGCCGGCCGAGAAGGCCCCCGCCGCCGAGAAAGCCCCGGCCGAGAAGAAGCCCAAGGCCGGCAAGAAGCTCCCCAAGGAGGCCGGAGCCGCCGCCGGAGACAAGAAGAAGAAGAGGAACAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTCCACCCTGACATCGGGATCTCCAGCAAGGCCATGGGCATCATGAACAGCTTCATCAACGACATCTTTGAGAAGCTCGCTCAGGAGTCGTCGAAGCTCGCAAGGTACAACAAGAAGCCGACGATTACTTCTCGGGAGATCCAGACTGCTGTCAGGCTTGTGCTTCCTGGGGAGTTGGCCAAGCACGCCGTTTCTGAGGGGACAAAGGCGGTGACCAAGTTCACTAGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

146

Amino Acids

15.93

Weight (kDa)

10.08

Isoelectric Point (pI)

26.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 46 - 122 2e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 76 - 144 6.2e-07 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 6 cut(s) 27, 57, 60, 126, 129, 416
AclWI GGATC 2 cut(s) 233, 340
AcoI YGGCCR 3 cut(s) 42, 75, 384
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 4 cut(s) 95, 115, 205, 221
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 5 cut(s) 14, 106, 258, 283, 304
AluI AGCT 5 cut(s) 14, 106, 258, 283, 304
Alw26I GTCTC 2 cut(s) 129, 164
AlwI GGATC 2 cut(s) 233, 340
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 7 cut(s) 42, 51, 75, 93, 117, 237, 384
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 52, 196, 208
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 430
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 2 cut(s) 196, 208
BalI TGGCCA 1 cut(s) 386
BanI GGYRCC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 375
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 129, 164
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 50
BglII AGATCT 1 cut(s) 180
BisI GCNGC 3 cut(s) 60, 126, 129
BlsI GCNGC 3 cut(s) 61, 127, 130
Bme1390I CCNGG 2 cut(s) 74, 375
Bme18I GGWCC 2 cut(s) 196, 208
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 3 cut(s) 52, 196, 208
BmiI GGNNCC 3 cut(s) 6, 54, 124
BmrFI CCNGG 2 cut(s) 74, 375
BmsI GCATC 1 cut(s) 255
BoxI GACNNNNGTC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 5 cut(s) 72, 90, 111, 240, 374
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 115, 205, 221
Bse118I RCCGGY 2 cut(s) 40, 95
Bse8I GATNNNNATC 1 cut(s) 185
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 5 cut(s) 72, 90, 111, 240, 374
BseJI GATNNNNATC 1 cut(s) 185
BseLI CCNNNNNNNGG 4 cut(s) 95, 115, 205, 221
BseMII CTCAG 3 cut(s) 6, 302, 393
BseX3I CGGCCG 2 cut(s) 42, 75
Bsh1285I CGRYCG 2 cut(s) 45, 78
BshFI GGCC 7 cut(s) 44, 53, 77, 95, 119, 239, 386
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 2 cut(s) 45, 78
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 5 cut(s) 41, 74, 96, 120, 132
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 4 cut(s) 95, 115, 205, 221
BsmAI GTCTC 2 cut(s) 129, 164
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 7 cut(s) 44, 53, 77, 95, 119, 239, 386
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 339
Bsp143I GATC 3 cut(s) 180, 225, 345
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 6 cut(s) 27, 57, 60, 126, 129, 416
BspANI GGCC 7 cut(s) 44, 53, 77, 95, 119, 239, 386
BspCNI CTCAG 3 cut(s) 7, 301, 394
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 6, 54, 124
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 2 cut(s) 233, 340
BspQI GCTCTTC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 164
BsrFI RCCGGY 2 cut(s) 40, 95
BssAI RCCGGY 2 cut(s) 40, 95
BssECI CCNNGG 5 cut(s) 72, 90, 111, 240, 374
BssMI GATC 3 cut(s) 180, 225, 345
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 90, 111, 240
Bst2UI CCWGG 1 cut(s) 375
Bst6I CTCTTC 2 cut(s) 143, 155
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 6 cut(s) 27, 42, 97, 285, 306, 393
BstDEI CTNAG 4 cut(s) 15, 288, 402, 438
BstDSI CCRYGG 1 cut(s) 240
BstEII GGTNACC 1 cut(s) 418
BstENI CCTNNNNNAGG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 183, 228, 348
BstMAI GTCTC 2 cut(s) 129, 164
BstMBI GATC 3 cut(s) 180, 225, 345
BstMCI CGRYCG 2 cut(s) 45, 78
BstMWI GCNNNNNNNGC 6 cut(s) 11, 50, 59, 68, 125, 392
BstNI CCWGG 1 cut(s) 375
BstPAI GACNNNNGTC 1 cut(s) 356
BstPI GGTNACC 1 cut(s) 418
BstSCI CCNGG 2 cut(s) 72, 373
BstX2I RGATCY 3 cut(s) 180, 225, 345
BstYI RGATCY 3 cut(s) 180, 225, 345
BstZI CGGCCG 2 cut(s) 42, 75
BsuRI GGCC 7 cut(s) 44, 53, 77, 95, 119, 239, 386
BtgI CCRYGG 1 cut(s) 240
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 6 cut(s) 27, 42, 97, 285, 306, 393
CciI TCATGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 40, 95
Cfr13I GGNCC 3 cut(s) 52, 196, 208
Csp6I GTAC 1 cut(s) 313
CviAII CATG 2 cut(s) 241, 250
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 4 cut(s) 15, 288, 402, 438
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 182, 227, 347
DpnII GATC 3 cut(s) 180, 225, 345
EaeI YGGCCR 3 cut(s) 42, 75, 384
EagI CGGCCG 2 cut(s) 42, 75
Eam1104I CTCTTC 2 cut(s) 143, 155
EarI CTCTTC 2 cut(s) 143, 155
EclXI CGGCCG 2 cut(s) 42, 75
Eco130I CCWWGG 3 cut(s) 90, 111, 240
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 196, 208
Eco52I CGGCCG 2 cut(s) 42, 75
Eco88I CYCGRG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 418
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO109I RGGNCCY 2 cut(s) 52, 196
EcoO65I GGTNACC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 3 cut(s) 90, 111, 240
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 90, 111, 240
FaeI CATG 2 cut(s) 244, 253
FaiI YATR 2 cut(s) 242, 251
FaqI GGGAC 1 cut(s) 421
FatI CATG 2 cut(s) 240, 249
FauI CCCGC 2 cut(s) 34, 64
Fnu4HI GCNGC 3 cut(s) 60, 126, 129
Fsp4HI GCNGC 3 cut(s) 60, 126, 129
FspBI CTAG 1 cut(s) 432
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 60, 126, 129
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 7 cut(s) 44, 53, 77, 95, 119, 239, 386
HapII CCGG 5 cut(s) 41, 74, 96, 120, 132
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 244, 253
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 293
HpaII CCGG 5 cut(s) 41, 74, 96, 120, 132
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 2 cut(s) 211, 429
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 5 cut(s) 223, 250, 290, 341, 349
Hpy8I GTNNAC 2 cut(s) 211, 429
Hpy99I CGWCG 2 cut(s) 301, 331
HpyAV CCTTC 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 50, 59, 68, 125, 392
HpyF3I CTNAG 4 cut(s) 15, 288, 402, 438
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 244, 253
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 2 cut(s) 40, 95
KroNI GCCGGC 2 cut(s) 42, 97
Kzo9I GATC 3 cut(s) 180, 225, 345
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 2 cut(s) 111, 122
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 432
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 182, 227, 347
MboI GATC 3 cut(s) 180, 225, 345
MboII GAAGA 8 cut(s) 31, 46, 94, 154, 157, 160, 172, 181
MflI RGATCY 3 cut(s) 180, 225, 345
MlsI TGGCCA 1 cut(s) 386
MluNI TGGCCA 1 cut(s) 386
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 4 cut(s) 109, 144, 209, 397
Mox20I TGGCCA 1 cut(s) 386
MroNI GCCGGC 2 cut(s) 40, 95
MroXI GAANNNNTTC 1 cut(s) 257
MscI TGGCCA 1 cut(s) 386
Msp20I TGGCCA 1 cut(s) 386
MspI CCGG 5 cut(s) 41, 74, 96, 120, 132
MspR9I CCNGG 2 cut(s) 74, 375
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 6 cut(s) 11, 50, 59, 68, 125, 392
NaeI GCCGGC 2 cut(s) 42, 97
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 240
NdeII GATC 3 cut(s) 180, 225, 345
NgoMIV GCCGGC 2 cut(s) 40, 95
NlaIII CATG 2 cut(s) 244, 253
NlaIV GGNNCC 3 cut(s) 6, 54, 124
NmeAIII GCCGAG 4 cut(s) 55, 70, 88, 103
NmuCI GTSAC 1 cut(s) 418
PagI TCATGA 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 155
PdiI GCCGGC 2 cut(s) 42, 97
PdmI GAANNNNTTC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 61, 127, 130
PleI GAGTC 1 cut(s) 301
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 301
PpuMI RGGWCCY 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 373
PspEI GGTNACC 1 cut(s) 418
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 3 cut(s) 6, 54, 124
PspPI GGNCC 3 cut(s) 52, 196, 208
PspPPI RGGWCCY 1 cut(s) 196
PsuI RGATCY 3 cut(s) 180, 225, 345
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 155
SatI GCNGC 3 cut(s) 60, 126, 129
Sau3AI GATC 3 cut(s) 180, 225, 345
Sau96I GGNCC 3 cut(s) 52, 196, 208
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 74, 375
SetI ASST 9 cut(s) 16, 108, 176, 198, 210, 260, 285, 306, 314
SfaNI GCATC 1 cut(s) 255
SfiI GGCCNNNNNGGCC 1 cut(s) 50
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 196, 208
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SsiI CCGC 6 cut(s) 27, 57, 60, 126, 129, 416
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 72, 373
StyI CCWWGG 3 cut(s) 90, 111, 240
TaqI TCGA 1 cut(s) 299
TauI GCSGC 3 cut(s) 62, 128, 131
TseFI GTSAC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 2 cut(s) 250, 266
VpaK11BI GGWCC 2 cut(s) 196, 208
XagI CCTNNNNNAGG 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.