MD07G1116500.v1.1

histone H2B.1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000578
Physical Location & Seq
Reverse (-)
14178997 .. 14179407
411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1116500.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGCGCCCAAAGTCGAGAAGAAGCCAGCAAAGGAGAAGAAGTCCGTCGTGGCGGAGAAAGCCCTCGCCGAGAAGAAGCCTAAGGCTGGAAAGAAGCTCCCAAAGGAGGTCGGAGCCGTCGCCGGAGACAAGAAGAAGAAGAGATCGAAGAAAAGCGTGGAGACCTATAAGATTTACATCTTCAAGGTGCTGAAGCAGGGCCACCCTAACATCGGGATCTCTAGTAAGGCTATGGGAATCATGAACAACTTCATCAATAACATCTTCGAGAAGATCGCCCAGGAGTCGTCTAGGCTCGAGAGGTACAATAAGAAGCCCACGATCACTTCCTGGGAAATCCAGACCACCGTGAGACTCGTGCTCCTCGGTGAGCTCGCCAAACACGCTATGACTAAGTTTACCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

137

Amino Acids

15.24

Weight (kDa)

10.2

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 43 - 119 2.2e-15 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 3 cut(s) 86, 106, 212
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 2 cut(s) 279, 329
AluBI AGCT 3 cut(s) 97, 373, 405
AluI AGCT 3 cut(s) 97, 373, 405
Alw21I GWGCWC 2 cut(s) 363, 375
Alw26I GTCTC 3 cut(s) 120, 155, 346
AlwI GGATC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 1 cut(s) 199
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 296
AxyI CCTNAGG 1 cut(s) 81
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 375
BauI CACGAG 1 cut(s) 356
Bbv12I GWGCWC 2 cut(s) 363, 375
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 281, 331
BcoDI GTCTC 3 cut(s) 120, 155, 346
BfaI CTAG 2 cut(s) 222, 291
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 281, 331
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 6, 115
BmrFI CCNGG 2 cut(s) 281, 331
BsaBI GATNNNNATC 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 279, 330, 364
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 106, 212
Bse21I CCTNAGG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 2 cut(s) 281, 331
BseDI CCNNGG 3 cut(s) 279, 330, 364
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 3 cut(s) 86, 106, 212
BseRI GAGGAG 1 cut(s) 353
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 363, 375
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 3 cut(s) 86, 106, 212
BsmAI GTCTC 3 cut(s) 120, 155, 346
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 363, 375
Bsp143I GATC 4 cut(s) 143, 216, 273, 321
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 201
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 6, 115
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 279, 330, 364
BssMI GATC 4 cut(s) 143, 216, 273, 321
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 281, 331
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 27, 375
BstDEI CTNAG 2 cut(s) 81, 393
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 146, 219, 276, 324
BstMAI GTCTC 3 cut(s) 120, 155, 346
BstMBI GATC 4 cut(s) 143, 216, 273, 321
BstMWI GCNNNNNNNGC 2 cut(s) 59, 383
BstNI CCWGG 2 cut(s) 281, 331
BstSCI CCNGG 2 cut(s) 279, 329
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 27, 375
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 304
CviAII CATG 1 cut(s) 241
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 81, 393
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 145, 218, 275, 323
DpnII GATC 4 cut(s) 143, 216, 273, 321
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 212
Eco81I CCTNAGG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 279, 329
EcoT38I GRGCYC 1 cut(s) 375
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 1 cut(s) 244
FaiI YATR 4 cut(s) 168, 233, 242, 389
FatI CATG 1 cut(s) 240
FriOI GRGCYC 1 cut(s) 375
FspBI CTAG 2 cut(s) 222, 291
GlaI GCGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 123
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 237, 284, 354
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 7 cut(s) 16, 214, 241, 268, 298, 340, 408
Hpy8I GTNNAC 1 cut(s) 399
Hpy99I CGWCG 2 cut(s) 50, 122
HpyCH4III ACNGT 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 383
HpyF3I CTNAG 2 cut(s) 81, 393
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 4 cut(s) 143, 216, 273, 321
LmnI GCTCC 3 cut(s) 102, 113, 366
LpnPI CCDG 9 cut(s) 39, 72, 136, 182, 266, 293, 316, 343, 353
MaeI CTAG 2 cut(s) 222, 291
MalI GATC 4 cut(s) 145, 218, 275, 323
MboI GATC 4 cut(s) 143, 216, 273, 321
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 2 cut(s) 363, 375
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 293, 348
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 4 cut(s) 74, 100, 294, 374
MroXI GAANNNNTTC 1 cut(s) 248
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 2 cut(s) 281, 331
MvaI CCWGG 2 cut(s) 281, 331
MwoI GCNNNNNNNGC 2 cut(s) 59, 383
NarI GGCGCC 1 cut(s) 5
NdeII GATC 4 cut(s) 143, 216, 273, 321
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 6, 115
NmeAIII GCCGAG 1 cut(s) 94
PaeR7I CTCGAG 1 cut(s) 296
PagI TCATGA 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 237
PleI GAGTC 2 cut(s) 292, 348
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 292, 348
Psp124BI GAGCTC 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 279, 329
PspGI CCWGG 2 cut(s) 279, 329
PspN4I GGNNCC 2 cut(s) 6, 115
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SacI GAGCTC 1 cut(s) 375
Sau3AI GATC 4 cut(s) 143, 216, 273, 321
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 293, 348
ScrFI CCNGG 2 cut(s) 281, 331
SduI GDGCHC 2 cut(s) 363, 375
SetI ASST 7 cut(s) 99, 111, 167, 189, 305, 375, 407
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SsiI CCGC 1 cut(s) 53
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 222, 291
SstI GAGCTC 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 279, 329
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 4 cut(s) 15, 146, 267, 297
TfiI GAWTC 1 cut(s) 237
TspDTI ATGAA 2 cut(s) 241, 257
TspGWI ACGGA 1 cut(s) 34
XhoI CTCGAG 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 2 cut(s) 222, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.