AT3G47300

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003155
Physical Location & Seq
Reverse (-)
17428443 .. 17429623
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47300.1

Sequence Viewer

Length: 630 bp
ATGGACAAAACACAATTGATCTTGTTAGGACTACCGATTTTCCTGCTTTGTTCCGATCTCTTCAATCTCTTCACGCCTCCACCGCCGAAATCTCAGCACCAATCACCACCGTCTATCTCAGAAACCCTAGATTTCCCCGCACAGAAGTCAACTGGTGTTGGATATGGAAACACCGTAGAGATCAACTTCTGCATCTCCTGCTCGTACAAGGGAACTGCTGTATCAATGAAGAAGATGTTAGAGAGTGTTTTTCCTGGATTAGATGTAGTTCTTGCTAATTACCCTGCACCAGCACCAAAACGTATTCTTGCTAAGGTTGTGCCAGTTGCTCAGGTGGGTGTTATTGGTCTCATTATGGGAGGTGAACAGATATTTCCCATGATTGGAATTGCGCAGCCTCCTGCTTGGTATCACTCTTTGAGAGCGAATAGATTCGGGTCCATGGCTTCCACTTGGCTTCTTGGTAACTTCTTGCAGTCTTTTTTGCAAAGTTCTGGTGCTTTTGAAGTTAGCTGCAATGGAGAATTGGTGTTTTCTAAATTGAAAGAAGGGAGATTTCCGGGGGAGATTGAGTTGAGAGATCTCATCAGTGGAACTATGACGAAACCATTCGTCACAGGCAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

209

Amino Acids

22.65

Weight (kDa)

8.34

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 58 - 196 5.5e-18 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 393
AciI CCGC 2 cut(s) 83, 138
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 64, 506, 544
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 2 cut(s) 513, 624
AluI AGCT 2 cut(s) 513, 624
Alw26I GTCTC 1 cut(s) 353
ApeKI GCWGC 3 cut(s) 394, 513, 621
Asp700I GAANNNNTTC 2 cut(s) 431, 608
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 438
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 2 cut(s) 96, 374
AvaII GGWCC 1 cut(s) 438
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BbvI GCAGC 2 cut(s) 406, 500
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 1 cut(s) 255
BcnI CCSGG 1 cut(s) 561
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 128
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 395, 514, 622
BlsI GCNGC 3 cut(s) 396, 515, 623
Bme1390I CCNGG 2 cut(s) 255, 561
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 2 cut(s) 255, 561
BmsI GCATC 1 cut(s) 201
Bpu10I CCTNAGC 2 cut(s) 312, 330
BpuMI CCSGG 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 441, 560
BsaXI ACNNNNNCTCC 4 cut(s) 513, 543, 557, 587
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 2 cut(s) 157, 323
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 441, 560
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 3 cut(s) 107, 132, 344
BseNI ACTGG 2 cut(s) 157, 323
BseXI GCAGC 2 cut(s) 406, 500
BsgI GTGCAG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 560
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 353
Bso31I GGTCTC 1 cut(s) 353
Bsp143I GATC 4 cut(s) 18, 55, 180, 580
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 2 cut(s) 83, 138
BspCNI CTCAG 3 cut(s) 106, 131, 343
BspLI GGNNCC 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 2 cut(s) 157, 323
BssECI CCNNGG 2 cut(s) 441, 560
BssMI GATC 4 cut(s) 18, 55, 180, 580
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 111, 175
Bst6I CTCTTC 2 cut(s) 65, 74
BstAPI GCANNNNNTGC 1 cut(s) 198
BstDEI CTNAG 4 cut(s) 93, 118, 312, 330
BstDSI CCRYGG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 4 cut(s) 21, 58, 183, 583
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 4 cut(s) 18, 55, 180, 580
BstMWI GCNNNNNNNGC 2 cut(s) 82, 198
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 2 cut(s) 253, 559
BstV1I GCAGC 2 cut(s) 406, 500
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BtgI CCRYGG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 595
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 379, 442
CviJI RGCY 5 cut(s) 397, 446, 457, 513, 624
CviKI_1 RGCY 5 cut(s) 397, 446, 457, 513, 624
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 4 cut(s) 93, 118, 312, 330
DpnI GATC 4 cut(s) 20, 57, 182, 582
DpnII GATC 4 cut(s) 18, 55, 180, 580
Eam1104I CTCTTC 2 cut(s) 65, 74
EarI CTCTTC 2 cut(s) 65, 74
Eco130I CCWWGG 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 2 cut(s) 382, 445
FaiI YATR 5 cut(s) 165, 356, 380, 443, 599
FatI CATG 2 cut(s) 378, 441
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 395, 514, 622
Fsp4HI GCNGC 3 cut(s) 395, 514, 622
FspBI CTAG 1 cut(s) 128
FspI TGCGCA 1 cut(s) 393
GlaI GCGC 1 cut(s) 393
GluI GCNGC 3 cut(s) 395, 514, 622
HapII CCGG 1 cut(s) 560
HhaI GCGC 1 cut(s) 394
Hin1II CATG 2 cut(s) 382, 445
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 1 cut(s) 432
HpaII CCGG 1 cut(s) 560
HphI GGTGA 2 cut(s) 96, 374
Hpy166II GTNNAC 2 cut(s) 150, 365
Hpy188I TCNGA 2 cut(s) 55, 121
Hpy8I GTNNAC 2 cut(s) 150, 365
HpyAV CCTTC 1 cut(s) 542
HpyCH4III ACNGT 2 cut(s) 111, 175
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 5 cut(s) 192, 287, 475, 487, 516
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 198
HpyF3I CTNAG 4 cut(s) 93, 118, 312, 330
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 2 cut(s) 382, 445
HspAI GCGC 1 cut(s) 392
Kzo9I GATC 4 cut(s) 18, 55, 180, 580
Lsp1109I GCAGC 2 cut(s) 406, 500
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 2 cut(s) 464, 613
MalI GATC 4 cut(s) 20, 57, 182, 582
MboI GATC 4 cut(s) 18, 55, 180, 580
MboII GAAGA 4 cut(s) 52, 61, 241, 244
MfeI CAATTG 1 cut(s) 14
MflI RGATCY 1 cut(s) 580
MluCI AATT 5 cut(s) 14, 277, 387, 524, 539
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 87, 353, 408
MroXI GAANNNNTTC 2 cut(s) 431, 608
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 255, 561
MunI CAATTG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 82, 198
NciI CCSGG 1 cut(s) 561
NcoI CCATGG 1 cut(s) 441
NdeII GATC 4 cut(s) 18, 55, 180, 580
NlaIII CATG 2 cut(s) 382, 445
NlaIV GGNNCC 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 613
NsbI TGCGCA 1 cut(s) 393
PdmI GAANNNNTTC 2 cut(s) 431, 608
PfeI GAWTC 1 cut(s) 432
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 3 cut(s) 396, 515, 623
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 1 cut(s) 438
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SatI GCNGC 3 cut(s) 395, 514, 622
Sau3AI GATC 4 cut(s) 18, 55, 180, 580
Sau96I GGNCC 1 cut(s) 438
ScrFI CCNGG 2 cut(s) 255, 561
SetI ASST 6 cut(s) 304, 318, 336, 364, 515, 626
SfaNI GCATC 1 cut(s) 201
SinI GGWCC 1 cut(s) 438
Sse9I AATT 5 cut(s) 14, 277, 387, 524, 539
SsiI CCGC 2 cut(s) 83, 138
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 2 cut(s) 253, 559
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 2 cut(s) 111, 175
TaiI ACGT 1 cut(s) 304
TasI AATT 5 cut(s) 14, 277, 387, 524, 539
TfiI GAWTC 1 cut(s) 432
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 3 cut(s) 394, 513, 621
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 1 cut(s) 595
VpaK11BI GGWCC 1 cut(s) 438
XmnI GAANNNNTTC 2 cut(s) 431, 608
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.