AT5G58640

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003155
Physical Location & Seq
Forward (+)
23697841 .. 23699767
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58640.1

Sequence Viewer

Length: 687 bp
ATGGACAGAGCACAATTGATCTTGTTAGGTCTACCTATATTCTTGTTTTGTTCGGATCTCTTCAACCTCTTCACTCCTCCGCCTCCTAAACCTCAGCCTCACCGTCCTCATCAGCCACCGCATATTCCTCACCAGCATCGTCCTAATGCGATCATCCCCGAAACCCTAGACTTTCCTTCACAGAAGACAAGTGGCTTAGGAGGAGCAATTGGATATGGAAATACAGTAGAGATCAACTTCTGCGTCTCCTGTTCTTACAAGGGAACTGCAGTCACCATGAAGAAGATGTTAGAGACGGCTTTTCCCGGTTTAGATGTGATTCTCGCAAATTACCCACCACCAGCACCAAAACGCCTTCTAGCTAAGGTTGTGCCGGTTGTTCAGATGGGAGTTATTGGTATGATAGTTGCAGGTGATCGTATCCTTCCCATGATTGGAATTACGAACCCACCTGCTTGGTTCCACTCCTTGAGGGCCAACAGATTTGGATCCATGGCTTCCACTTGGCTTATCGGAAACTTTCTGCAGTCTTACCTTCAAAGCTCAGGCGCCTTTGAAGTTCACTGCAACGGCGAACCGGTGTTCTCTAAATTGAAAGAAGGTAGATTCCCAGGAGAGATCGAGCTGAGAGATCTCATCAGTAAAACTCTAACACGACCGAGCATACTCACAGGCAGCAGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

228

Amino Acids

25.0

Weight (kDa)

9.27

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 75 - 214 3.1e-18 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 401, 460
Acc36I ACCTGC 2 cut(s) 401, 460
AccB1I GGYRCC 1 cut(s) 548
AccI GTMKAC 1 cut(s) 31
AciI CCGC 2 cut(s) 80, 119
AclWI GGATC 3 cut(s) 63, 483, 496
AcyI GRCGYC 1 cut(s) 549
AfiI CCNNNNNNNGG 1 cut(s) 434
AgeI ACCGGT 1 cut(s) 577
AgsI TTSAA 4 cut(s) 64, 539, 557, 595
AjnI CCWGG 1 cut(s) 610
AluBI AGCT 4 cut(s) 362, 543, 625, 681
AluI AGCT 4 cut(s) 362, 543, 625, 681
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 250, 287
AlwI GGATC 3 cut(s) 63, 483, 496
AlwNI CAGNNNCTG 1 cut(s) 684
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 2 cut(s) 675, 678
AsiGI ACCGGT 1 cut(s) 577
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 4 cut(s) 92, 122, 265, 425
BamHI GGATCC 1 cut(s) 488
BanI GGYRCC 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 13
BbvCI CCTCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 379
BceAI ACGGC 2 cut(s) 312, 586
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 431
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 250, 287
BfaI CTAG 2 cut(s) 167, 359
BfmI CTRYAG 2 cut(s) 267, 524
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 2 cut(s) 401, 460
BfuI GTATCC 1 cut(s) 431
BglII AGATCT 1 cut(s) 631
BisI GCNGC 2 cut(s) 676, 679
BlsI GCNGC 2 cut(s) 677, 680
Bme1390I CCNGG 2 cut(s) 306, 612
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 3 cut(s) 461, 490, 550
BmrFI CCNGG 2 cut(s) 306, 612
BmsI GCATC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 191
Bpu10I CCTNAGC 4 cut(s) 93, 196, 363, 544
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 487
BsaHI GRCGYC 1 cut(s) 549
BsaJI CCNNGG 2 cut(s) 492, 610
BsaWI WCCGGW 1 cut(s) 577
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse118I RCCGGY 2 cut(s) 373, 577
Bse8I GATNNNNATC 1 cut(s) 487
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 492, 610
BseGI GGATG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 3 cut(s) 107, 558, 617
BseRI GAGGAG 2 cut(s) 66, 216
Bsh1285I CGRYCG 1 cut(s) 659
BshFI GGCC 1 cut(s) 476
BshNI GGYRCC 1 cut(s) 548
BshTI ACCGGT 1 cut(s) 577
BsiEI CGRYCG 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 3 cut(s) 306, 374, 578
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 2 cut(s) 250, 287
BsmBI CGTCTC 2 cut(s) 250, 287
BsnI GGCC 1 cut(s) 476
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 8 cut(s) 18, 55, 150, 231, 415, 488, 618, 631
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 2 cut(s) 80, 119
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 3 cut(s) 106, 557, 618
BspLI GGNNCC 3 cut(s) 461, 490, 550
BspMAI CTGCAG 2 cut(s) 271, 528
BspMI ACCTGC 2 cut(s) 401, 460
BspPI GGATC 3 cut(s) 63, 483, 496
BspT107I GGYRCC 1 cut(s) 548
BsrFI RCCGGY 2 cut(s) 373, 577
BssAI RCCGGY 2 cut(s) 373, 577
BssECI CCNNGG 2 cut(s) 492, 610
BssMI GATC 8 cut(s) 18, 55, 150, 231, 415, 488, 618, 631
BssNI GRCGYC 1 cut(s) 549
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 2 cut(s) 104, 226
Bst6I CTCTTC 2 cut(s) 65, 74
BstACI GRCGYC 1 cut(s) 549
BstDEI CTNAG 5 cut(s) 93, 196, 363, 544, 626
BstDSI CCRYGG 1 cut(s) 492
BstF5I GGATG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 8 cut(s) 21, 58, 153, 234, 418, 491, 621, 634
BstMAI GTCTC 2 cut(s) 250, 287
BstMBI GATC 8 cut(s) 18, 55, 150, 231, 415, 488, 618, 631
BstMCI CGRYCG 1 cut(s) 659
BstNI CCWGG 1 cut(s) 612
BstSCI CCNGG 2 cut(s) 304, 610
BstSFI CTRYAG 2 cut(s) 267, 524
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 3 cut(s) 55, 488, 631
BstXI CCANNNNNNTGG 1 cut(s) 456
BstYI RGATCY 3 cut(s) 55, 488, 631
BsuI GTATCC 1 cut(s) 431
BsuRI GGCC 1 cut(s) 476
BtgI CCRYGG 1 cut(s) 492
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 562
BveI ACCTGC 2 cut(s) 401, 460
CaiI CAGNNNCTG 1 cut(s) 684
CfoI GCGC 1 cut(s) 551
Cfr10I RCCGGY 2 cut(s) 373, 577
Cfr13I GGNCC 1 cut(s) 474
CseI GACGC 1 cut(s) 232
CspAI ACCGGT 1 cut(s) 577
CviAII CATG 3 cut(s) 277, 430, 493
DdeI CTNAG 5 cut(s) 93, 196, 363, 544, 626
DinI GGCGCC 1 cut(s) 550
DpnI GATC 8 cut(s) 20, 57, 152, 233, 417, 490, 620, 633
DpnII GATC 8 cut(s) 18, 55, 150, 231, 415, 488, 618, 631
Eam1104I CTCTTC 2 cut(s) 65, 74
EarI CTCTTC 2 cut(s) 65, 74
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 492
EgeI GGCGCC 1 cut(s) 550
EheI GGCGCC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 492
Esp3I CGTCTC 2 cut(s) 250, 287
FaeI CATG 3 cut(s) 280, 433, 496
FaiI YATR 8 cut(s) 38, 123, 216, 278, 401, 431, 494, 665
FatI CATG 3 cut(s) 276, 429, 492
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 676, 679
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 676, 679
FspBI CTAG 2 cut(s) 167, 359
GlaI GCGC 1 cut(s) 550
GluI GCNGC 2 cut(s) 676, 679
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 1 cut(s) 476
HapII CCGG 3 cut(s) 306, 374, 578
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 551
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 3 cut(s) 280, 433, 496
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HinfI GANTC 2 cut(s) 319, 606
HpaII CCGG 3 cut(s) 306, 374, 578
HphI GGTGA 4 cut(s) 92, 122, 265, 425
Hpy166II GTNNAC 2 cut(s) 32, 562
Hpy188I TCNGA 3 cut(s) 55, 384, 515
Hpy8I GTNNAC 2 cut(s) 32, 562
HpyAV CCTTC 5 cut(s) 186, 365, 434, 545, 593
HpyCH4III ACNGT 2 cut(s) 104, 226
HpyCH4V TGCA 4 cut(s) 269, 410, 526, 567
HpyF3I CTNAG 5 cut(s) 93, 196, 363, 544, 626
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 3 cut(s) 280, 433, 496
HspAI GCGC 1 cut(s) 549
KasI GGCGCC 1 cut(s) 548
Kzo9I GATC 8 cut(s) 18, 55, 150, 231, 415, 488, 618, 631
LmnI GCTCC 1 cut(s) 203
LweI GCATC 1 cut(s) 145
MaeI CTAG 2 cut(s) 167, 359
MaeIII GTNAC 1 cut(s) 271
MalI GATC 8 cut(s) 20, 57, 152, 233, 417, 490, 620, 633
MboI GATC 8 cut(s) 18, 55, 150, 231, 415, 488, 618, 631
MboII GAAGA 5 cut(s) 52, 61, 196, 292, 295
MfeI CAATTG 2 cut(s) 14, 207
MflI RGATCY 3 cut(s) 55, 488, 631
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 5 cut(s) 14, 207, 328, 438, 590
Mly113I GGCGCC 1 cut(s) 549
MnlI CCTC 9 cut(s) 77, 87, 93, 102, 108, 117, 138, 194, 465
MspI CCGG 3 cut(s) 306, 374, 578
MspR9I CCNGG 2 cut(s) 306, 612
MunI CAATTG 2 cut(s) 14, 207
MvaI CCWGG 1 cut(s) 612
NarI GGCGCC 1 cut(s) 549
NciI CCSGG 1 cut(s) 306
NcoI CCATGG 1 cut(s) 492
NdeII GATC 8 cut(s) 18, 55, 150, 231, 415, 488, 618, 631
NlaIII CATG 3 cut(s) 280, 433, 496
NlaIV GGNNCC 3 cut(s) 461, 490, 550
NmuCI GTSAC 1 cut(s) 271
PaqCI CACCTGC 2 cut(s) 401, 460
PfeI GAWTC 2 cut(s) 319, 606
PinAI ACCGGT 1 cut(s) 577
PkrI GCNGC 2 cut(s) 677, 680
PluTI GGCGCC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 610
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 3 cut(s) 461, 490, 550
PspPI GGNCC 1 cut(s) 474
PstI CTGCAG 2 cut(s) 271, 528
PstNI CAGNNNCTG 1 cut(s) 684
PsuI RGATCY 3 cut(s) 55, 488, 631
SatI GCNGC 2 cut(s) 676, 679
Sau3AI GATC 8 cut(s) 18, 55, 150, 231, 415, 488, 618, 631
Sau96I GGNCC 1 cut(s) 474
ScrFI CCNGG 2 cut(s) 306, 612
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 2 cut(s) 267, 524
SfoI GGCGCC 1 cut(s) 550
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 5 cut(s) 14, 207, 328, 438, 590
SsiI CCGC 2 cut(s) 80, 119
SspDI GGCGCC 1 cut(s) 548
SspMI CTAG 2 cut(s) 167, 359
StyD4I CCNGG 2 cut(s) 304, 610
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 104, 226
TaqI TCGA 1 cut(s) 621
TaqII GACCGA 1 cut(s) 673
TasI AATT 5 cut(s) 14, 207, 328, 438, 590
TfiI GAWTC 2 cut(s) 319, 606
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 675, 678
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 2 cut(s) 167, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.