Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003155

Physical Location & Seq

Genomic Coordinates Forward (+)

26150906 .. 26152920

Gene Structure 2015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G279000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTGGTTAATGGGAGCATCCGAGCATGTCATATTTTTCACAGAAGGGGATCCTCTTATGTTTTAGTTTTGGGACTTGGCTTCACATTTTTGTTAAATCACAAAAATCATTATATCCTCAATAAAGATCATCACTTTTTTTTTTCAGGGTCTCTCTGTTTCTCTCCAATGGATCGAGCTCAGTTAGTTCTGGTTGGATTACCAATCTTTCTGTTCTGCACAGACATTTTTAGCCTTTTCACACCTAAACCTCCCAAAACCAGTACCCATTATCATGTTCATGATGATGAAGATCCTCAGCCCCTTGATCATCCAGATCCTCAACATCAACAGCTTCTCCAAGAGCCCCTTAAATTCCCCACCCAGCAGAAATCTGATGTCATTGGAGCAATTGGCATGGGAAGCACCATCAACATTGGTTTCTGTACATCCTGTTCTTACAGAGGAAGTGCAGTAACAATGAAAAACATGCTGGGAACAGCATTTCCTGGGATCAATGTAATTCTGGCAAACCACCCTCCTCCGCTTCCAAGACGGCTGCTGAGCAAATTGGTACCAGTTTTTCAAGTAGGGATCATCGGGACGATAATGGCGGGCGAACATATTTTCTCGAGGTTGGGGATTACAACGCCACCTCCTTGGTACCACTCCTTGAAAGCAAATAGATTTGGAAGCATTGCAAGCACTTGGATTTTGGGAAACTTCATACAATCCTTCCTTCAAAGTACAGGAGCTTTTGAAGTCTATTGTAATGGGGAATTGGTCTTCTCGAAGCTGAAGGAGCAGAGGTTCCCTAGTGAGATTGAGTTGAGGGATCTTGTTGGGAAGAAGCTCGGTAGTTCGAGAACCGCCGACGGTCCTGGAGGAGGGGCCTGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rdx

Protein Analysis

294

Amino Acids

32.43

Weight (kDa)

9.04

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47300 AT5G58640 AT5G58640
fragaria_vesca	FvH4_3g38810 FvH4_6g11300
malus_domestica	MD03G1067200.v1.1 MD04G1155500.v1.1 MD11G1071900.v1.1 MD12G1168700.v1.1
prunus_persica	Prupe.6G055700_v2.0.a1 Prupe.6G279000_v2.0.a1
pyrus_communis	pycom11g06000 pycom12g16020
rosa_chinensis	RchiOBHm_Chr3g0462841 RchiOBHm_Chr5g0070001
rosa_laevigata	RLG00000024828 RLG00000036112
rosa_multiflora	Rmu_sc0000766.1_g000012 Rmu_sc0002367.1_g000004 Rmu_sc0030656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011060 Rroxscaffold_6G00417160
rosa_rugosa	Rorug03G0059600 Rorug03G0059600 Rorug05G0402000 Rorug05G0402100
rosa_samantha	Rh3AG117700 Rh3BG121500 Rh3CG124400 Rh3DG123100 Rh5AG458500 Rh5BG477200 Rh5CG500900 Rh5DG489200
rosa_wichuraiana	Rw3G009980 Rw5G001670 Rw5G042800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	553, 642
AccB1I	GGYRCC	2 cut(s)	553, 642
AciI	CCGC	3 cut(s)	524, 593, 849
AclWI	GGATC	8 cut(s)	45, 58, 180, 287, 311, 500, 581, 822
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	797
AfaI	GTAC	5 cut(s)	265, 427, 555, 644, 727
AfiI	CCNNNNNNNGG	1 cut(s)	866
AgsI	TTSAA	4 cut(s)	566, 655, 722, 740
AjnI	CCWGG	3 cut(s)	487, 859, 872
AloI	GAACNNNNNNTCC	4 cut(s)	469, 501, 773, 805
AluBI	AGCT	5 cut(s)	179, 334, 734, 775, 832
AluI	AGCT	5 cut(s)	179, 334, 734, 775, 832
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	8 cut(s)	45, 58, 180, 287, 311, 500, 581, 822
Ama87I	CYCGRG	1 cut(s)	610
AoxI	GGCC	1 cut(s)	870
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	1 cut(s)	353
Asp718I	GGTACC	2 cut(s)	553, 642
AspS9I	GGNCC	2 cut(s)	857, 870
AvaI	CYCGRG	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	857
BamHI	GGATCC	1 cut(s)	50
BanI	GGYRCC	2 cut(s)	553, 642
BanII	GRGCYC	2 cut(s)	181, 348
BbsI	GAAGAC	1 cut(s)	757
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	525
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	3 cut(s)	489, 861, 874
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	795
BisI	GCNGC	1 cut(s)	539
BlpI	GCTNAGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	540
Bme1390I	CCNGG	3 cut(s)	489, 861, 874
Bme18I	GGWCC	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	857, 870
BmiI	GGNNCC	5 cut(s)	52, 555, 644, 791, 871
BmrFI	CCNGG	3 cut(s)	489, 861, 874
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	757
BpmI	CTGGAG	1 cut(s)	882
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	488, 638
BsaXI	ACNNNNNCTCC	6 cut(s)	321, 351, 619, 649, 773, 803
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse1I	ACTGG	2 cut(s)	261, 557
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	3 cut(s)	489, 861, 874
BseDI	CCNNGG	2 cut(s)	488, 638
BseGI	GGATG	3 cut(s)	18, 310, 428
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	3 cut(s)	194, 311, 533
BseNI	ACTGG	2 cut(s)	261, 557
BseRI	GAGGAG	2 cut(s)	510, 879
BseXI	GCAGC	1 cut(s)	525
BseYI	CCCAGC	2 cut(s)	363, 472
BsgI	GTGCAG	2 cut(s)	202, 471
BshFI	GGCC	1 cut(s)	872
BshNI	GGYRCC	2 cut(s)	553, 642
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	610
BslFI	GGGAC	2 cut(s)	87, 595
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	87, 595
BsnI	GGCC	1 cut(s)	872
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	181, 348
Bsp1407I	TGTACA	1 cut(s)	425
Bsp143I	GATC	9 cut(s)	50, 127, 172, 292, 307, 316, 492, 573, 814
Bsp1720I	GCTNAGC	1 cut(s)	542
BspACI	CCGC	3 cut(s)	524, 593, 849
BspANI	GGCC	1 cut(s)	872
BspCNI	CTCAG	3 cut(s)	193, 310, 534
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	5 cut(s)	52, 555, 644, 791, 871
BspPI	GGATC	8 cut(s)	45, 58, 180, 287, 311, 500, 581, 822
BspT107I	GGYRCC	2 cut(s)	553, 642
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	675
BsrGI	TGTACA	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	261, 557
BssECI	CCNNGG	2 cut(s)	488, 638
BssMI	GATC	9 cut(s)	50, 127, 172, 292, 307, 316, 492, 573, 814
BssT1I	CCWWGG	1 cut(s)	638
Bst2UI	CCWGG	3 cut(s)	489, 861, 874
Bst4CI	ACNGT	1 cut(s)	857
BstAUI	TGTACA	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	595, 682
BstDEI	CTNAG	4 cut(s)	180, 297, 542, 879
BstENI	CCTNNNNNAGG	1 cut(s)	864
BstF5I	GGATG	3 cut(s)	18, 310, 428
BstKTI	GATC	9 cut(s)	53, 130, 175, 295, 310, 319, 495, 576, 817
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	9 cut(s)	50, 127, 172, 292, 307, 316, 492, 573, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	402, 681, 781
BstNI	CCWGG	3 cut(s)	489, 861, 874
BstNSI	RCATGY	2 cut(s)	30, 472
BstSCI	CCNGG	3 cut(s)	487, 859, 872
BstV1I	GCAGC	1 cut(s)	525
BstV2I	GAAGAC	1 cut(s)	757
BstX2I	RGATCY	4 cut(s)	50, 292, 316, 814
BstXI	CCANNNNNNTGG	1 cut(s)	639
BstYI	RGATCY	4 cut(s)	50, 292, 316, 814
BsuRI	GGCC	1 cut(s)	872
BtsCI	GGATG	3 cut(s)	18, 310, 428
Cac8I	GCNNGC	2 cut(s)	595, 682
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	857, 870
Csp6I	GTAC	5 cut(s)	264, 426, 554, 643, 726
CviAII	CATG	5 cut(s)	27, 275, 281, 397, 469
CviQI	GTAC	5 cut(s)	264, 426, 554, 643, 726
DdeI	CTNAG	4 cut(s)	180, 297, 542, 879
DpnI	GATC	9 cut(s)	52, 129, 174, 294, 309, 318, 494, 575, 816
DpnII	GATC	9 cut(s)	50, 127, 172, 292, 307, 316, 492, 573, 814
Ecl136II	GAGCTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	638
Eco24I	GRGCYC	2 cut(s)	181, 348
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	857
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	797
Eco88I	CYCGRG	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	864
EcoO109I	RGGNCCY	1 cut(s)	870
EcoRII	CCWGG	3 cut(s)	487, 859, 872
EcoT14I	CCWWGG	1 cut(s)	638
EcoT38I	GRGCYC	2 cut(s)	181, 348
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	5 cut(s)	30, 278, 284, 400, 472
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FaqI	GGGAC	2 cut(s)	87, 595
FatI	CATG	5 cut(s)	26, 274, 280, 396, 468
FauI	CCCGC	1 cut(s)	586
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	539
FokI	GGATG	3 cut(s)	5, 297, 415
FriOI	GRGCYC	2 cut(s)	181, 348
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	1 cut(s)	795
GluI	GCNGC	1 cut(s)	539
GsaI	CCCAGC	2 cut(s)	367, 476
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	1 cut(s)	872
Hin1II	CATG	5 cut(s)	30, 278, 284, 400, 472
Hpy188I	TCNGA	2 cut(s)	23, 376
Hpy188III	TCNNGA	6 cut(s)	281, 314, 580, 610, 769, 843
Hpy99I	CGWCG	1 cut(s)	857
HpyAV	CCTTC	4 cut(s)	39, 724, 728, 772
HpyCH4III	ACNGT	1 cut(s)	857
HpyCH4V	TGCA	3 cut(s)	219, 452, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	402, 681, 781
HpyF3I	CTNAG	4 cut(s)	180, 297, 542, 879
Hsp92II	CATG	5 cut(s)	30, 278, 284, 400, 472
KpnI	GGTACC	2 cut(s)	557, 646
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	9 cut(s)	50, 127, 172, 292, 307, 316, 492, 573, 814
LmnI	GCTCC	4 cut(s)	15, 386, 731, 781
Lsp1109I	GCAGC	1 cut(s)	525
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	795
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	9 cut(s)	52, 129, 174, 294, 309, 318, 494, 575, 816
MboI	GATC	9 cut(s)	50, 127, 172, 292, 307, 316, 492, 573, 814
MboII	GAAGA	3 cut(s)	302, 757, 838
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	4 cut(s)	50, 292, 316, 814
MhlI	GDGCHC	2 cut(s)	181, 348
MluCI	AATT	5 cut(s)	353, 390, 501, 548, 758
MmeI	TCCRAC	1 cut(s)	175
MseI	TTAA	3 cut(s)	9, 95, 351
MslI	CAYNNNNRTG	3 cut(s)	273, 279, 285
MspR9I	CCNGG	3 cut(s)	489, 861, 874
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	3 cut(s)	489, 861, 874
MwoI	GCNNNNNNNGC	3 cut(s)	402, 681, 781
NdeII	GATC	9 cut(s)	50, 127, 172, 292, 307, 316, 492, 573, 814
NlaIII	CATG	5 cut(s)	30, 278, 284, 400, 472
NlaIV	GGNNCC	5 cut(s)	52, 555, 644, 791, 871
NspI	RCATGY	2 cut(s)	30, 472
PaeR7I	CTCGAG	1 cut(s)	610
PagI	TCATGA	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	3 cut(s)	487, 859, 872
PspFI	CCCAGC	2 cut(s)	363, 472
PspGI	CCWGG	3 cut(s)	487, 859, 872
PspN4I	GGNNCC	5 cut(s)	52, 555, 644, 791, 871
PspPI	GGNCC	2 cut(s)	857, 870
PsrI	GAACNNNNNNTAC	2 cut(s)	418, 450
PsuI	RGATCY	4 cut(s)	50, 292, 316, 814
RsaI	GTAC	5 cut(s)	265, 427, 555, 644, 727
RsaNI	GTAC	5 cut(s)	264, 426, 554, 643, 726
RseI	CAYNNNNRTG	3 cut(s)	273, 279, 285
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	3 cut(s)	9, 95, 351
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	9 cut(s)	50, 127, 172, 292, 307, 316, 492, 573, 814
Sau96I	GGNCC	2 cut(s)	857, 870
ScrFI	CCNGG	3 cut(s)	489, 861, 874
SduI	GDGCHC	2 cut(s)	181, 348
SfaNI	GCATC	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	610
SinI	GGWCC	1 cut(s)	857
SlaI	CTCGAG	1 cut(s)	610
SmiMI	CAYNNNNRTG	3 cut(s)	273, 279, 285
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	5 cut(s)	353, 390, 501, 548, 758
SsiI	CCGC	3 cut(s)	524, 593, 849
SspMI	CTAG	1 cut(s)	795
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	3 cut(s)	487, 859, 872
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	1 cut(s)	857
TaqI	TCGA	4 cut(s)	175, 611, 770, 842
TasI	AATT	5 cut(s)	353, 390, 501, 548, 758
TatI	WGTACW	2 cut(s)	425, 725
Tru1I	TTAA	3 cut(s)	9, 95, 351
Tru9I	TTAA	3 cut(s)	9, 95, 351
TseI	GCWGC	1 cut(s)	538
TspDTI	ATGAA	4 cut(s)	269, 303, 476, 694
VpaK11BI	GGWCC	1 cut(s)	857
XagI	CCTNNNNNAGG	1 cut(s)	864
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	2 cut(s)	30, 472
XhoI	CTCGAG	1 cut(s)	610
XspI	CTAG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.