Rh5AG458500

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003155
Physical Location & Seq
Forward (+)
78643381 .. 78645646
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG458500.1

Sequence Viewer

Length: 600 bp
ATGGATCGCACCCAGATCGTTCTTCTAGGGTTACCACTCTTCCTCTTCTGCTTCGATGTCCTTAACCTCTTCACTCTCCGACCACCACCGCCTCCTCCTCACAAGGCTCCCCACCACCACCACCACCTCCAAAACAAACCACCTCCGCTCCCCAAAGACACCCTAGACTTCCCCTCACAGAAACCAATCGCTGGAGCAGTGGGGGTCGGCAACACAGTCAAGATTAGCTTCTGCACCTCTTGCTCTTACAAGGGGACGGCAGTAACAATGACCAAGATGCTAGAGGCTGCTTATCCTGGGATTGAAGTTGTTCTTTCAAACTATCCCCCAGCTTTACCAAAGCGTCTGCTTAGCAAATTAGTTCCTGTTGTTCAATTTGGAATATTTGGGATTGTCATGGGGGGTGAGCAACTTTTCCCTATGGTGGGGATGGTACCTCCTCCGTGGTTTTACTCTTTGCGTGCGAATAGGTTTGGAACCATGGCATCTACTTGGCTTCTTGGTAATGCATTGCAGTCCTTCCTTCAAGGCACTGGCGCTTTTGAAGTTTCCCTCAATGATGAATTGGTGGGTGAACCTTCTTTTCATATTTGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

199

Amino Acids

21.85

Weight (kDa)

8.83

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 72 - 190 1e-10 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 148
AciI CCGC 2 cut(s) 89, 146
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 3 cut(s) 191, 424, 425
AgsI TTSAA 5 cut(s) 305, 318, 374, 527, 545
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 2 cut(s) 228, 332
AluI AGCT 2 cut(s) 228, 332
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 309
Asp718I GGTACC 1 cut(s) 433
AspLEI GCGC 1 cut(s) 539
AsuHPI GGTGA 2 cut(s) 416, 584
BanI GGYRCC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 424
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 297
BfaI CTAG 3 cut(s) 26, 164, 281
BfoI RGCGCY 1 cut(s) 540
BisI GCNGC 1 cut(s) 288
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 3 cut(s) 108, 435, 478
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 267, 494
BpmI CTGGAG 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 350
BsaJI CCNNGG 3 cut(s) 296, 443, 480
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 424, 425
Bse1I ACTGG 1 cut(s) 538
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 296, 443, 480
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 3 cut(s) 191, 424, 425
BseMI GCAATG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 3 cut(s) 84, 87, 429
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 433
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 3 cut(s) 191, 424, 425
BsmFI GGGAC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 4, 15
Bsp1720I GCTNAGC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 2 cut(s) 89, 146
BspLI GGNNCC 3 cut(s) 108, 435, 478
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 433
BsrBI CCGCTC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 3 cut(s) 296, 443, 480
BssMI GATC 2 cut(s) 4, 15
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 3 cut(s) 44, 50, 74
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 2 cut(s) 443, 480
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 435
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 2 cut(s) 7, 18
BstMBI GATC 2 cut(s) 4, 15
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 297
BstPI GGTNACC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 274
BtgI CCRYGG 2 cut(s) 443, 480
BtsCI GGATG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 531
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 1 cut(s) 539
CseI GACGC 1 cut(s) 332
Csp6I GTAC 1 cut(s) 434
CviAII CATG 2 cut(s) 397, 481
CviJI RGCY 5 cut(s) 107, 228, 287, 332, 496
CviKI_1 RGCY 5 cut(s) 107, 228, 287, 332, 496
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 1 cut(s) 350
DpnI GATC 2 cut(s) 6, 17
DpnII GATC 2 cut(s) 4, 15
Eam1104I CTCTTC 3 cut(s) 44, 50, 74
EarI CTCTTC 3 cut(s) 44, 50, 74
Eco130I CCWWGG 1 cut(s) 480
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 480
EcoT22I ATGCAT 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 2 cut(s) 400, 484
FaiI YATR 5 cut(s) 398, 422, 482, 588, 598
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 297, 329
FaqI GGGAC 1 cut(s) 268
FatI CATG 2 cut(s) 396, 480
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 3 cut(s) 26, 164, 281
GlaI GCGC 1 cut(s) 538
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 540
HgaI GACGC 1 cut(s) 332
HhaI GCGC 1 cut(s) 539
Hin1II CATG 2 cut(s) 400, 484
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HphI GGTGA 2 cut(s) 416, 584
Hpy166II GTNNAC 1 cut(s) 575
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 575
HpyAV CCTTC 3 cut(s) 529, 533, 588
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 234, 509, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 350
Hsp92II CATG 2 cut(s) 400, 484
HspAI GCGC 1 cut(s) 537
KpnI GGTACC 1 cut(s) 437
Kzo9I GATC 2 cut(s) 4, 15
LmnI GCTCC 3 cut(s) 112, 153, 194
LpnPI CCDG 7 cut(s) 26, 177, 282, 309, 342, 378, 519
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 2 cut(s) 267, 494
MaeI CTAG 3 cut(s) 26, 164, 281
MaeIII GTNAC 2 cut(s) 30, 262
MalI GATC 2 cut(s) 6, 17
MbiI CCGCTC 1 cut(s) 148
MboI GATC 2 cut(s) 4, 15
MboII GAAGA 4 cut(s) 14, 31, 37, 61
MluCI AATT 3 cut(s) 356, 374, 563
MmeI TCCRAC 1 cut(s) 103
Mph1103I ATGCAT 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 480
NdeII GATC 2 cut(s) 4, 15
NlaIII CATG 2 cut(s) 400, 484
NlaIV GGNNCC 3 cut(s) 108, 435, 478
NsiI ATGCAT 1 cut(s) 511
PdmI GAANNNNTTC 1 cut(s) 309
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 295
PspEI GGTNACC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 3 cut(s) 108, 435, 478
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 4, 15
ScrFI CCNGG 1 cut(s) 297
SetI ASST 9 cut(s) 69, 129, 145, 230, 239, 334, 439, 473, 580
SfaNI GCATC 2 cut(s) 267, 494
Sse9I AATT 3 cut(s) 356, 374, 563
SsiI CCGC 2 cut(s) 89, 146
SspI AATATT 1 cut(s) 384
SspMI CTAG 3 cut(s) 26, 164, 281
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 54
TasI AATT 3 cut(s) 356, 374, 563
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 204, 538
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 575, 576
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 2 cut(s) 204, 538
Van91I CCANNNNNTGG 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 3 cut(s) 26, 164, 281
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.