Rw5G042800

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003155
Physical Location & Seq
Forward (+)
74795179 .. 74797074
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G042800.1

Sequence Viewer

Length: 693 bp
ATGGATCGCTCCCAGATCGTTCTTCTAGGGTTACCACTCTTCCTCTTCTGCTTCGATGTCCTTAACCTCTTCACTCTCCGACCACCACCGCCTCCTCCTCATAAGGCTCCCCACCACCACCACCACCACCATGACCACCTCCAAAACAAACCACCTCCGCTCCCCAAAGACACCCTGGACTTCCCCTCACAGAAACCAATGGCTGGAGCAGTGGGGGTCGGCAACACAGTCAAGATTAGCTTCTGCACCTCTTGCTCTTACAAGGGGACGGCAGTAACAATGACCAAGATGCTAGACGCTGCTTATCCTGGGATTGAAGTTGTTCTTTCAAACTATCCCCCAGCTTTACCAAAGCGTCTGCTTAGCAAATTAGTTCCTGTTGTTCAATTTGGAATATTTGGGATTGTCATGGGGGGTGAGCAACTTTTCCCTATGGTGGGGATGGTACCTCCTCCATGGTTTTACTCTTTGCGCGCGAATAGGTTTGGAACCATGGCATCTACCTGGCTTCTTGGTAATGCATTGCAGTCCTTCCTTCAAGGCACTGGCGCTTTTGAAGTTTCCCTCAACGATGAATTGATTTTCTCTAAGCTCCAGGAGGGAAGATTTCCAGGAGAGATTGAACTAAGAGATGCCATTGGCAGGAAGTTGGTCAATTCAGGAATCACAGGTGACGGGCCATTATGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

230

Amino Acids

25.28

Weight (kDa)

8.79

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 76 - 213 1.9e-17 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 160
AccII CGCG 2 cut(s) 474, 476
AciI CCGC 2 cut(s) 89, 158
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 4 cut(s) 203, 436, 437, 642
AgsI TTSAA 6 cut(s) 317, 330, 386, 539, 557, 623
AjnI CCWGG 5 cut(s) 174, 307, 503, 594, 610
AluBI AGCT 3 cut(s) 240, 344, 592
AluI AGCT 3 cut(s) 240, 344, 592
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 677
ApeKI GCWGC 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 321
Asp718I GGTACC 1 cut(s) 445
AspLEI GCGC 3 cut(s) 474, 476, 551
AspS9I GGNCC 2 cut(s) 677, 687
AsuHPI GGTGA 2 cut(s) 428, 683
AvaII GGWCC 1 cut(s) 687
BanI GGYRCC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 286
BccI CCATC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 5 cut(s) 176, 309, 505, 596, 612
BfaI CTAG 3 cut(s) 26, 293, 691
BfoI RGCGCY 1 cut(s) 552
BisI GCNGC 1 cut(s) 300
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 5 cut(s) 176, 309, 505, 596, 612
Bme18I GGWCC 1 cut(s) 687
BmgT120I GGNCC 2 cut(s) 677, 687
BmiI GGNNCC 3 cut(s) 108, 447, 490
BmrFI CCNGG 5 cut(s) 176, 309, 505, 596, 612
BmsI GCATC 3 cut(s) 279, 506, 622
BpmI CTGGAG 2 cut(s) 225, 578
Bpu1102I GCTNAGC 1 cut(s) 362
BsaJI CCNNGG 4 cut(s) 174, 308, 455, 492
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 436, 437, 642
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 521
BseBI CCWGG 5 cut(s) 176, 309, 505, 596, 612
BseDI CCNNGG 4 cut(s) 174, 308, 455, 492
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 4 cut(s) 203, 436, 437, 642
BseMI GCAATG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 550
BsePI GCGCGC 1 cut(s) 472
BseRI GAGGAG 3 cut(s) 84, 87, 441
BseXI GCAGC 1 cut(s) 286
BseYI CCCAGC 1 cut(s) 340
BsgI GTGCAG 1 cut(s) 229
Bsh1236I CGCG 2 cut(s) 474, 476
BshFI GGCC 1 cut(s) 679
BshNI GGYRCC 1 cut(s) 445
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 4 cut(s) 203, 436, 437, 642
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 1 cut(s) 679
Bsp143I GATC 2 cut(s) 4, 15
Bsp1720I GCTNAGC 1 cut(s) 362
Bsp19I CCATGG 2 cut(s) 455, 492
BspACI CCGC 2 cut(s) 89, 158
BspANI GGCC 1 cut(s) 679
BspFNI CGCG 2 cut(s) 474, 476
BspLI GGNNCC 3 cut(s) 108, 447, 490
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 445
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 521
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 4 cut(s) 174, 308, 455, 492
BssHII GCGCGC 1 cut(s) 472
BssMI GATC 2 cut(s) 4, 15
BssT1I CCWWGG 2 cut(s) 455, 492
Bst2UI CCWGG 5 cut(s) 176, 309, 505, 596, 612
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 3 cut(s) 44, 50, 74
BstAPI GCANNNNNTGC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 3 cut(s) 362, 588, 626
BstDSI CCRYGG 2 cut(s) 455, 492
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 447
BstFNI CGCG 2 cut(s) 474, 476
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 3 cut(s) 474, 476, 551
BstKTI GATC 2 cut(s) 7, 18
BstMBI GATC 2 cut(s) 4, 15
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 5 cut(s) 176, 309, 505, 596, 612
BstPI GGTNACC 1 cut(s) 30
BstSCI CCNGG 5 cut(s) 174, 307, 503, 594, 610
BstUI CGCG 2 cut(s) 474, 476
BstV1I GCAGC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 679
BtgI CCRYGG 2 cut(s) 455, 492
BtsCI GGATG 1 cut(s) 447
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 216, 543
Cac8I GCNNGC 1 cut(s) 474
CfoI GCGC 3 cut(s) 474, 476, 551
Cfr13I GGNCC 2 cut(s) 677, 687
CseI GACGC 2 cut(s) 305, 344
Csp6I GTAC 1 cut(s) 446
CviAII CATG 4 cut(s) 131, 409, 456, 493
CviJI RGCY 7 cut(s) 107, 203, 240, 344, 508, 592, 679
CviKI_1 RGCY 7 cut(s) 107, 203, 240, 344, 508, 592, 679
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 3 cut(s) 362, 588, 626
DpnI GATC 2 cut(s) 6, 17
DpnII GATC 2 cut(s) 4, 15
Eam1104I CTCTTC 3 cut(s) 44, 50, 74
EarI CTCTTC 3 cut(s) 44, 50, 74
Eco130I CCWWGG 2 cut(s) 455, 492
Eco47I GGWCC 1 cut(s) 687
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRII CCWGG 5 cut(s) 174, 307, 503, 594, 610
EcoT14I CCWWGG 2 cut(s) 455, 492
EcoT22I ATGCAT 1 cut(s) 523
ErhI CCWWGG 2 cut(s) 455, 492
FaeI CATG 4 cut(s) 134, 412, 459, 496
FaiI YATR 7 cut(s) 102, 132, 410, 434, 457, 494, 685
FalI AAGNNNNNCTT 4 cut(s) 224, 256, 309, 341
FaqI GGGAC 1 cut(s) 280
FatI CATG 4 cut(s) 130, 408, 455, 492
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 3 cut(s) 26, 293, 691
GlaI GCGC 3 cut(s) 473, 475, 550
GluI GCNGC 1 cut(s) 300
GsaI CCCAGC 1 cut(s) 344
GsuI CTGGAG 2 cut(s) 225, 578
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 1 cut(s) 679
HgaI GACGC 2 cut(s) 305, 344
HhaI GCGC 3 cut(s) 474, 476, 551
Hin1II CATG 4 cut(s) 134, 412, 459, 496
Hin6I GCGC 3 cut(s) 472, 474, 549
HinP1I GCGC 3 cut(s) 472, 474, 549
HinfI GANTC 1 cut(s) 663
HphI GGTGA 2 cut(s) 428, 683
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 232, 660
HpyAV CCTTC 2 cut(s) 541, 545
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 246, 521, 526
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 3 cut(s) 362, 588, 626
Hsp92II CATG 4 cut(s) 134, 412, 459, 496
HspAI GCGC 3 cut(s) 472, 474, 549
KpnI GGTACC 1 cut(s) 449
Kzo9I GATC 2 cut(s) 4, 15
LmnI GCTCC 5 cut(s) 14, 112, 165, 206, 597
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 3 cut(s) 279, 506, 622
MaeI CTAG 3 cut(s) 26, 293, 691
MaeIII GTNAC 3 cut(s) 30, 274, 671
MalI GATC 2 cut(s) 6, 17
MbiI CCGCTC 1 cut(s) 160
MboI GATC 2 cut(s) 4, 15
MboII GAAGA 5 cut(s) 14, 31, 37, 61, 615
MluCI AATT 4 cut(s) 368, 386, 575, 655
MmeI TCCRAC 1 cut(s) 103
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 129
MspR9I CCNGG 5 cut(s) 176, 309, 505, 596, 612
MvaI CCWGG 5 cut(s) 176, 309, 505, 596, 612
MvnI CGCG 2 cut(s) 474, 476
MwoI GCNNNNNNNGC 1 cut(s) 252
NcoI CCATGG 2 cut(s) 455, 492
NdeII GATC 2 cut(s) 4, 15
NlaIII CATG 4 cut(s) 134, 412, 459, 496
NlaIV GGNNCC 3 cut(s) 108, 447, 490
NmuCI GTSAC 1 cut(s) 671
NsiI ATGCAT 1 cut(s) 523
PauI GCGCGC 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 663
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 2 cut(s) 594, 610
PkrI GCNGC 1 cut(s) 301
Psp6I CCWGG 5 cut(s) 174, 307, 503, 594, 610
PspEI GGTNACC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 340
PspGI CCWGG 5 cut(s) 174, 307, 503, 594, 610
PspN4I GGNNCC 3 cut(s) 108, 447, 490
PspPI GGNCC 2 cut(s) 677, 687
PteI GCGCGC 1 cut(s) 472
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 4, 15
Sau96I GGNCC 2 cut(s) 677, 687
ScrFI CCNGG 5 cut(s) 176, 309, 505, 596, 612
SfaNI GCATC 3 cut(s) 279, 506, 622
SinI GGWCC 1 cut(s) 687
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 4 cut(s) 368, 386, 575, 655
SsiI CCGC 2 cut(s) 89, 158
SspI AATATT 1 cut(s) 396
SspMI CTAG 3 cut(s) 26, 293, 691
StyD4I CCNGG 5 cut(s) 174, 307, 503, 594, 610
StyI CCWWGG 2 cut(s) 455, 492
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 54
TasI AATT 4 cut(s) 368, 386, 575, 655
TfiI GAWTC 1 cut(s) 663
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 216, 550
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 1 cut(s) 588
TspRI CASTG 2 cut(s) 216, 550
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 3 cut(s) 26, 293, 691
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.