MD03G1067200.v1.1

SelT-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0003155
Physical Location & Seq
Reverse (-)
5367936 .. 5369713
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1067200.v1.1.491

Sequence Viewer

Length: 693 bp
ATGGATCGAGCACAGCTTGTTCTGCTAGGGCTTCCGCTCTTCCTCTTCTGCACGGACCTCCTAAACCTCTTCACTCCGCCCCCTCCTCCGCCCCACAAGCCTCCCCACCACCACCATCCCCACCTCCAACACCAACACCAACACCAACCTCCTCCAGTCGCCAAAGAAACCCTAGAGTTTCCCTCACAGAAACCAAGCGCTTTCGGTGCCATCGGCGTCGGCAGCACGGTCAAGATTAGCTTCTGCACTTCTTGCTCTTACAAGGGGAATGCGGTAACAATGACGAAGATGTTGGAGGCTTCTTTTCCTGGAATCCATGTTGAACTTTCGAACTATCCCCCGCCCCTTCCAAAGCGTTTGGTCAGCAAGCTGGTTCCGGTTGCTCAAGTTGGAGTTTTTGGGATTATAATGGCGGGCGAGCAGATATTTCCTATGTTGGGGATTACGACACCTCCTGCTTGGTATTATTCTCTTCGTGCAAATAGATTTGGTACCATTGCATCCACTTGGCTTCTTGGCAATGCATTGCAGTCCTTCCTCCAAGGCACTGGTGCTTTCGAAGTTTACCTCAACGATGAATTGGTTTTCTCAAAGCTGAAGGAGGGAAGATTTCCGGGAGAGATTGAACTAAGAGATGCCATTGCGAGTAAGTTGGGTAGTTCAAGAATCACAGACTCGGCTTTATGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

231

Amino Acids

25.24

Weight (kDa)

8.78

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 76 - 214 6.4e-19 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
Acc65I GGTACC 1 cut(s) 491
AccB1I GGYRCC 2 cut(s) 206, 491
AccBSI CCGCTC 1 cut(s) 37
AciI CCGC 6 cut(s) 35, 77, 89, 272, 341, 413
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 493
AfeI AGCGCT 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 437
AgsI TTSAA 3 cut(s) 323, 626, 663
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 4 cut(s) 16, 240, 370, 595
AluI AGCT 4 cut(s) 16, 240, 370, 595
Alw21I GWGCWC 1 cut(s) 13
AlwI GGATC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 222
Asp718I GGTACC 1 cut(s) 491
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 55, 687
AsuC2I CCSGG 1 cut(s) 615
AsuII TTCGAA 2 cut(s) 329, 558
AvaII GGWCC 2 cut(s) 55, 687
BanI GGYRCC 2 cut(s) 206, 491
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 234
BccI CCATC 2 cut(s) 123, 218
BciT130I CCWGG 1 cut(s) 309
BcnI CCSGG 1 cut(s) 615
BfaI CTAG 3 cut(s) 26, 173, 691
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 309, 615
Bme18I GGWCC 2 cut(s) 55, 687
BmgT120I GGNCC 2 cut(s) 55, 687
BmiI GGNNCC 3 cut(s) 208, 375, 493
BmrFI CCNGG 2 cut(s) 309, 615
BmsI GCATC 2 cut(s) 509, 625
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 1 cut(s) 138
Bpu14I TTCGAA 2 cut(s) 329, 558
BpuEI CTTGAG 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 541
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse1I ACTGG 2 cut(s) 155, 553
Bse3DI GCAATG 4 cut(s) 495, 524, 526, 639
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 2 cut(s) 115, 500
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMI GCAATG 4 cut(s) 495, 524, 526, 639
BseNI ACTGG 2 cut(s) 155, 553
BseRI GAGGAG 2 cut(s) 75, 141
BseXI GCAGC 1 cut(s) 234
BsgI GTGCAG 2 cut(s) 34, 229
BshNI GGYRCC 2 cut(s) 206, 491
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 377, 614
BslI CCNNNNNNNGG 1 cut(s) 437
BsmI GAATGC 1 cut(s) 274
Bsp119I TTCGAA 2 cut(s) 329, 558
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 6 cut(s) 35, 77, 89, 272, 341, 413
BspLI GGNNCC 3 cut(s) 208, 375, 493
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 44
BspT104I TTCGAA 2 cut(s) 329, 558
BspT107I GGYRCC 2 cut(s) 206, 491
BsrBI CCGCTC 1 cut(s) 37
BsrDI GCAATG 4 cut(s) 495, 524, 526, 639
BsrI ACTGG 2 cut(s) 155, 553
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 1 cut(s) 4
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 541
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 4 cut(s) 44, 50, 74, 477
BstACI GRCGYC 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 252
BstBI TTCGAA 2 cut(s) 329, 558
BstC8I GCNNGC 3 cut(s) 368, 415, 419
BstDEI CTNAG 1 cut(s) 629
BstF5I GGATG 2 cut(s) 115, 500
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 5 cut(s) 22, 97, 206, 222, 252
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 307, 613
BstV1I GCAGC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 548
BtsCI GGATG 2 cut(s) 115, 500
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 3 cut(s) 368, 415, 419
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 55, 687
CseI GACGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 492
CviAII CATG 1 cut(s) 317
CviJI RGCY 9 cut(s) 16, 31, 100, 240, 299, 370, 511, 595, 680
CviKI_1 RGCY 9 cut(s) 16, 31, 100, 240, 299, 370, 511, 595, 680
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 1 cut(s) 629
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 4 cut(s) 44, 50, 74, 477
EarI CTCTTC 4 cut(s) 44, 50, 74, 477
EciI GGCGGA 2 cut(s) 66, 78
Eco130I CCWWGG 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 55, 687
Eco47III AGCGCT 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 541
EcoT22I ATGCAT 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 1 cut(s) 320
FaiI YATR 4 cut(s) 318, 407, 434, 685
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 1 cut(s) 316
FauI CCCGC 2 cut(s) 348, 406
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 2 cut(s) 102, 487
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 3 cut(s) 26, 173, 691
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 2 cut(s) 377, 614
HgaI GACGC 1 cut(s) 205
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 3 cut(s) 312, 666, 674
HpaII CCGG 2 cut(s) 377, 614
Hpy166II GTNNAC 1 cut(s) 565
Hpy188III TCNNGA 2 cut(s) 232, 663
Hpy8I GTNNAC 1 cut(s) 565
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 356, 544, 592
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 6 cut(s) 51, 246, 479, 500, 524, 529
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 97, 206, 222, 252
HpyF3I CTNAG 1 cut(s) 629
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 1 cut(s) 198
KpnI GGTACC 1 cut(s) 495
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 44
LpnPI CCDG 8 cut(s) 168, 294, 321, 356, 390, 468, 534, 627
Lsp1109I GCAGC 1 cut(s) 234
LweI GCATC 2 cut(s) 509, 625
MaeI CTAG 3 cut(s) 26, 173, 691
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 6
MbiI CCGCTC 1 cut(s) 37
MboI GATC 1 cut(s) 4
MboII GAAGA 6 cut(s) 31, 37, 61, 298, 464, 618
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 578
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 3 cut(s) 151, 273, 370
Mph1103I ATGCAT 1 cut(s) 526
MspI CCGG 2 cut(s) 377, 614
MspR9I CCNGG 2 cut(s) 309, 615
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 5 cut(s) 22, 97, 206, 222, 252
NciI CCSGG 1 cut(s) 615
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 3 cut(s) 208, 375, 493
NmeAIII GCCGAG 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 526
NspV TTCGAA 2 cut(s) 329, 558
PciSI GCTCTTC 1 cut(s) 44
PctI GAATGC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 312, 666
PfoI TCCNGGA 2 cut(s) 307, 613
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PsiI TTATAA 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 208, 375, 493
PspPI GGNCC 2 cut(s) 55, 687
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 44
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 2 cut(s) 55, 687
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 2 cut(s) 309, 615
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 2 cut(s) 509, 625
SfuI TTCGAA 2 cut(s) 329, 558
SinI GGWCC 2 cut(s) 55, 687
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
Sse9I AATT 1 cut(s) 578
SsiI CCGC 6 cut(s) 35, 77, 89, 272, 341, 413
SspMI CTAG 3 cut(s) 26, 173, 691
StyD4I CCNGG 2 cut(s) 307, 613
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 3 cut(s) 7, 329, 558
TasI AATT 1 cut(s) 578
TfiI GAWTC 2 cut(s) 312, 666
TscAI CASTG 1 cut(s) 553
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 591
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 553
VpaK11BI GGWCC 2 cut(s) 55, 687
XspI CTAG 3 cut(s) 26, 173, 691
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.