RchiOBHm_Chr5g0070001

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003155
Physical Location & Seq
Forward (+)
75888643 .. 75890606
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34536

Sequence Viewer

Length: 690 bp
ATGGATCGCACCCAGATCGTTCTTCTAGGGTTACCACTCTTCCTCTTCTGCTTCGATGTCCTTAACCTCTTCACTCTCCGACCACCACCGCCTCCTCCTCACAAGGCTCATCACCACCACCACCACCACGACCACCTCCAAAACAAACCACCTCCGCTCCCCAAAGACACCCTAGACTTCCCCTCACAGAAACCAATCGCTGGAGCAGTGGGGGTCGGCAACACAGTCAAGATTAGCTTCTGCACCTCTTGCTCTTACAAGGGGACTGCAGTAACAATGACCAAGATGCTAGAGGCTGCTTATCCTGGGCTTGAAGTTGTTCTTTCAAACTATCCCCCAGCTTTACCAAAGCGTCTGCTTAGCAAATTAGTTCCTGCTGTTCAATTTGGAATATTTGGGATTGTCATGGGGGGTGAGCAACTTTTCCCTATGGTGGGGATGGTACCTCCTCCTTGGTTTTACTCTTTGCGTGCGAATAGGTTTGGAACCATGGCATCTACTTGGCTTCTTGGTAATGCATTGCAGTCCTTCCTTCAAGGCACTGGCGCTTTTGAAGTTTCCCTCAACGATGAATTGATTTTCTCTAAGCTCCAGGAGGGAAGATTTCCAGGAGAGATTGAACTAAGAGATGCCATTGGCAGGAAGTTGGTCAATTCAGGAATCACAGGTGACGGGGCATTATGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

229

Amino Acids

25.14

Weight (kDa)

8.79

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 75 - 212 1.4e-17 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 442
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 200
AccBSI CCGCTC 1 cut(s) 157
AciI CCGC 2 cut(s) 89, 155
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 4 cut(s) 200, 433, 434, 639
AgsI TTSAA 6 cut(s) 314, 327, 383, 536, 554, 620
AjnI CCWGG 3 cut(s) 304, 591, 607
AluBI AGCT 3 cut(s) 237, 341, 589
AluI AGCT 3 cut(s) 237, 341, 589
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 442
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 684
AsuHPI GGTGA 3 cut(s) 104, 425, 680
AvaII GGWCC 1 cut(s) 684
BanI GGYRCC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 433
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 306, 593, 609
BfaI CTAG 4 cut(s) 26, 173, 290, 688
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 549
BisI GCNGC 1 cut(s) 297
BlpI GCTNAGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 3 cut(s) 306, 593, 609
Bme18I GGWCC 1 cut(s) 684
BmgT120I GGNCC 1 cut(s) 684
BmiI GGNNCC 2 cut(s) 444, 487
BmrFI CCNGG 3 cut(s) 306, 593, 609
BmsI GCATC 3 cut(s) 276, 503, 619
BpmI CTGGAG 2 cut(s) 222, 575
Bpu1102I GCTNAGC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 305, 452, 489
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 433, 434, 639
Bse1I ACTGG 1 cut(s) 547
Bse3DI GCAATG 1 cut(s) 518
BseBI CCWGG 3 cut(s) 306, 593, 609
BseDI CCNNGG 3 cut(s) 305, 452, 489
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 4 cut(s) 200, 433, 434, 639
BseMI GCAATG 1 cut(s) 518
BseNI ACTGG 1 cut(s) 547
BseRI GAGGAG 3 cut(s) 84, 87, 438
BseXI GCAGC 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 442
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 4 cut(s) 200, 433, 434, 639
BsmFI GGGAC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 4, 15
Bsp1720I GCTNAGC 1 cut(s) 359
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 2 cut(s) 89, 155
BspLI GGNNCC 2 cut(s) 444, 487
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 442
BsrBI CCGCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 518
BsrI ACTGG 1 cut(s) 547
BssECI CCNNGG 3 cut(s) 305, 452, 489
BssMI GATC 2 cut(s) 4, 15
BssT1I CCWWGG 2 cut(s) 452, 489
Bst2UI CCWGG 3 cut(s) 306, 593, 609
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 3 cut(s) 44, 50, 74
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 3 cut(s) 359, 585, 623
BstDSI CCRYGG 1 cut(s) 489
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 444
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 2 cut(s) 7, 18
BstMBI GATC 2 cut(s) 4, 15
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNI CCWGG 3 cut(s) 306, 593, 609
BstPI GGTNACC 1 cut(s) 30
BstSCI CCNGG 3 cut(s) 304, 591, 607
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 1 cut(s) 444
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 540
Cac8I GCNNGC 1 cut(s) 471
CfoI GCGC 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 684
CseI GACGC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 443
CviAII CATG 2 cut(s) 406, 490
CviJI RGCY 7 cut(s) 107, 237, 296, 310, 341, 505, 589
CviKI_1 RGCY 7 cut(s) 107, 237, 296, 310, 341, 505, 589
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 3 cut(s) 359, 585, 623
DpnI GATC 2 cut(s) 6, 17
DpnII GATC 2 cut(s) 4, 15
Eam1104I CTCTTC 3 cut(s) 44, 50, 74
EarI CTCTTC 3 cut(s) 44, 50, 74
Eco130I CCWWGG 2 cut(s) 452, 489
Eco47I GGWCC 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRII CCWGG 3 cut(s) 304, 591, 607
EcoT14I CCWWGG 2 cut(s) 452, 489
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 452, 489
FaeI CATG 2 cut(s) 409, 493
FaiI YATR 4 cut(s) 407, 431, 491, 682
FalI AAGNNNNNCTT 4 cut(s) 221, 253, 306, 338
FaqI GGGAC 1 cut(s) 277
FatI CATG 2 cut(s) 405, 489
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 451
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 4 cut(s) 26, 173, 290, 688
GlaI GCGC 1 cut(s) 547
GluI GCNGC 1 cut(s) 297
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 2 cut(s) 222, 575
HaeII RGCGCY 1 cut(s) 549
HgaI GACGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 548
Hin1II CATG 2 cut(s) 409, 493
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HinfI GANTC 1 cut(s) 660
HphI GGTGA 3 cut(s) 104, 425, 680
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 229, 657
HpyAV CCTTC 2 cut(s) 538, 542
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 4 cut(s) 243, 269, 518, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 3 cut(s) 359, 585, 623
Hsp92II CATG 2 cut(s) 409, 493
HspAI GCGC 1 cut(s) 546
KpnI GGTACC 1 cut(s) 446
Kzo9I GATC 2 cut(s) 4, 15
LmnI GCTCC 3 cut(s) 162, 203, 594
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 3 cut(s) 276, 503, 619
MaeI CTAG 4 cut(s) 26, 173, 290, 688
MaeIII GTNAC 3 cut(s) 30, 271, 668
MalI GATC 2 cut(s) 6, 17
MbiI CCGCTC 1 cut(s) 157
MboI GATC 2 cut(s) 4, 15
MboII GAAGA 5 cut(s) 14, 31, 37, 61, 612
MluCI AATT 4 cut(s) 365, 383, 572, 652
MmeI TCCRAC 1 cut(s) 103
Mph1103I ATGCAT 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 1 cut(s) 63
MspR9I CCNGG 3 cut(s) 306, 593, 609
MvaI CCWGG 3 cut(s) 306, 593, 609
MwoI GCNNNNNNNGC 1 cut(s) 249
NcoI CCATGG 1 cut(s) 489
NdeII GATC 2 cut(s) 4, 15
NlaIII CATG 2 cut(s) 409, 493
NlaIV GGNNCC 2 cut(s) 444, 487
NmuCI GTSAC 1 cut(s) 668
NsiI ATGCAT 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 660
PflMI CCANNNNNTGG 1 cut(s) 200
PfoI TCCNGGA 2 cut(s) 591, 607
PkrI GCNGC 1 cut(s) 298
Psp6I CCWGG 3 cut(s) 304, 591, 607
PspEI GGTNACC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 3 cut(s) 304, 591, 607
PspN4I GGNNCC 2 cut(s) 444, 487
PspPI GGNCC 1 cut(s) 684
PstI CTGCAG 1 cut(s) 271
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 4, 15
Sau96I GGNCC 1 cut(s) 684
ScrFI CCNGG 3 cut(s) 306, 593, 609
SfaNI GCATC 3 cut(s) 276, 503, 619
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 684
Sse9I AATT 4 cut(s) 365, 383, 572, 652
SsiI CCGC 2 cut(s) 89, 155
SspI AATATT 1 cut(s) 393
SspMI CTAG 4 cut(s) 26, 173, 290, 688
StyD4I CCNGG 3 cut(s) 304, 591, 607
StyI CCWWGG 2 cut(s) 452, 489
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 54
TasI AATT 4 cut(s) 365, 383, 572, 652
TfiI GAWTC 1 cut(s) 660
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 213, 547
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 2 cut(s) 213, 547
Van91I CCANNNNNTGG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 684
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 4 cut(s) 26, 173, 290, 688
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.