Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000766.1

Orthogroup ID

OG0003155

Physical Location & Seq

Genomic Coordinates Reverse (-)

52186 .. 53999

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000766.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggatcgagctcagttagttctggttgcgttaccaatccttctgttctgcagagacattttcaaccttttcacacctagacctccaaaacctacccagtatcattatcaccagattgttgatcctgatgaaccagaccctgatccccaacccgaacagcaacagattctccaagagccgcttaaattcccagttcagaaatccgatggcattggagaaactggcataggaagcaccatcaacattgatttttgcacatcttgttcttacagaggaaatgcaataacaatgaaaaacatgctggcaacatcatatcctgggatcactgtaatcctagcaaaccatcctgcttcattttcaaaacgtctgctgagcaaattggtaccagttgttcaagtaggaatcatcgggacgatattgggtggtgagcaaatttttcaaaggttggggatggtgccaccaccttcttggtacgagtccttgaaagctaatagatttgggagtattgcaagcagttggcttttggggaacttcctccaatcctaccttcacagtacaggagcttttgaagtcttttgtaatggtgaattggtcttttcaaagctgaaggaggagagattccccagtgaaattgagttgagggatctggtcgggaagaagcttgctaatttgagaaaaactccaaaagctgatatcaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rdx

Protein Analysis

233

Amino Acids

26.01

Weight (kDa)

8.3

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47300 AT5G58640 AT5G58640
fragaria_vesca	FvH4_3g38810 FvH4_6g11300
malus_domestica	MD03G1067200.v1.1 MD04G1155500.v1.1 MD11G1071900.v1.1 MD12G1168700.v1.1
prunus_persica	Prupe.6G055700_v2.0.a1 Prupe.6G279000_v2.0.a1
pyrus_communis	pycom11g06000 pycom12g16020
rosa_chinensis	RchiOBHm_Chr3g0462841 RchiOBHm_Chr5g0070001
rosa_laevigata	RLG00000024828 RLG00000036112
rosa_multiflora	Rmu_sc0000766.1_g000012 Rmu_sc0002367.1_g000004 Rmu_sc0030656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011060 Rroxscaffold_6G00417160
rosa_rugosa	Rorug03G0059600 Rorug03G0059600 Rorug05G0402000 Rorug05G0402100
rosa_samantha	Rh3AG117700 Rh3BG121500 Rh3CG124400 Rh3DG123100 Rh5AG458500 Rh5BG477200 Rh5CG500900 Rh5DG489200
rosa_wichuraiana	Rw3G009980 Rw5G001670 Rw5G042800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	382
AccB1I	GGYRCC	2 cut(s)	382, 454
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	5 cut(s)	12, 116, 137, 329, 651
AcsI	RAATTY	2 cut(s)	185, 432
AcuI	CTGAAG	1 cut(s)	626
AfaI	GTAC	3 cut(s)	384, 473, 556
AgsI	TTSAA	7 cut(s)	64, 360, 395, 440, 484, 569, 600
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AluBI	AGCT	6 cut(s)	11, 488, 563, 604, 661, 689
AluI	AGCT	6 cut(s)	11, 488, 563, 604, 661, 689
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	5 cut(s)	12, 116, 137, 329, 651
AlwNI	CAGNNNCTG	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	185, 432
Asp718I	GGTACC	1 cut(s)	382
AsuHPI	GGTGA	3 cut(s)	101, 437, 596
BanI	GGYRCC	2 cut(s)	382, 454
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	4 cut(s)	200, 245, 351, 445
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	78, 335
BfmI	CTRYAG	1 cut(s)	49
BisI	GCNGC	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	318
BmiI	GGNNCC	2 cut(s)	384, 456
BmrFI	CCNGG	1 cut(s)	318
BmrI	ACTGGG	3 cut(s)	91, 185, 618
BmuI	ACTGGG	3 cut(s)	91, 185, 618
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
Bpu1102I	GCTNAGC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bse1I	ACTGG	5 cut(s)	97, 191, 226, 386, 624
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	343, 456
BseMII	CTCAG	2 cut(s)	26, 362
BseNI	ACTGG	5 cut(s)	97, 191, 226, 386, 624
BseRI	GAGGAG	1 cut(s)	626
BshNI	GGYRCC	2 cut(s)	382, 454
BsiHKAI	GWGCWC	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	5 cut(s)	4, 121, 142, 321, 643
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	25, 363
BspLI	GGNNCC	2 cut(s)	384, 456
BspMAI	CTGCAG	1 cut(s)	53
BspPI	GGATC	5 cut(s)	12, 116, 137, 329, 651
BspT107I	GGYRCC	2 cut(s)	382, 454
BsrI	ACTGG	5 cut(s)	97, 191, 226, 386, 624
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	5 cut(s)	4, 121, 142, 321, 643
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	328, 554
BstC8I	GCNNGC	3 cut(s)	303, 511, 663
BstDEI	CTNAG	2 cut(s)	12, 371
BstF5I	GGATG	2 cut(s)	343, 456
BstKTI	GATC	5 cut(s)	7, 124, 145, 324, 646
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	5 cut(s)	4, 121, 142, 321, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	643
BstXI	CCANNNNNNTGG	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	643
BtsCI	GGATG	2 cut(s)	343, 456
BtsIMutI	CAGTG	2 cut(s)	324, 631
Cac8I	GCNNGC	3 cut(s)	303, 511, 663
CaiI	CAGNNNCTG	1 cut(s)	140
Csp6I	GTAC	3 cut(s)	383, 472, 555
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	8 cut(s)	11, 178, 488, 520, 563, 604, 661, 689
CviKI_1	RGCY	8 cut(s)	11, 178, 488, 520, 563, 604, 661, 689
CviQI	GTAC	3 cut(s)	383, 472, 555
DdeI	CTNAG	2 cut(s)	12, 371
DpnI	GATC	5 cut(s)	6, 123, 144, 323, 645
DpnII	GATC	5 cut(s)	4, 121, 142, 321, 643
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	694
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	1 cut(s)	301
FaiI	YATR	3 cut(s)	227, 299, 313
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	2 cut(s)	330, 463
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	2 cut(s)	78, 335
GluI	GCNGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	4 cut(s)	166, 402, 476, 618
HphI	GGTGA	3 cut(s)	101, 437, 596
Hpy188I	TCNGA	2 cut(s)	198, 205
Hpy188III	TCNNGA	3 cut(s)	125, 409, 652
HpyAV	CCTTC	4 cut(s)	50, 474, 557, 601
HpyCH4III	ACNGT	2 cut(s)	328, 554
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	4 cut(s)	51, 255, 281, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	2 cut(s)	12, 371
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	1 cut(s)	301
KpnI	GGTACC	1 cut(s)	386
Kzo9I	GATC	5 cut(s)	4, 121, 142, 321, 643
LmnI	GCTCC	1 cut(s)	560
MaeI	CTAG	2 cut(s)	78, 335
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	5 cut(s)	6, 123, 144, 323, 645
MboI	GATC	5 cut(s)	4, 121, 142, 321, 643
MboII	GAAGA	1 cut(s)	667
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	6 cut(s)	185, 377, 432, 587, 630, 667
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	5 cut(s)	93, 266, 545, 604, 633
MseI	TTAA	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	5 cut(s)	4, 121, 142, 321, 643
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	2 cut(s)	384, 456
NspI	RCATGY	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	166, 402, 618
PkrI	GCNGC	1 cut(s)	180
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	384, 456
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PstI	CTGCAG	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	3 cut(s)	384, 473, 556
RsaNI	GTAC	3 cut(s)	383, 472, 555
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	5 cut(s)	4, 121, 142, 321, 643
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	49
Sse9I	AATT	6 cut(s)	185, 377, 432, 587, 630, 667
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	78, 335
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	328, 554
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	7
TasI	AATT	6 cut(s)	185, 377, 432, 587, 630, 667
TatI	WGTACW	1 cut(s)	554
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	3 cut(s)	166, 402, 618
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	331, 631
TspDTI	ATGAA	3 cut(s)	144, 305, 342
TspRI	CASTG	2 cut(s)	331, 631
XapI	RAATTY	2 cut(s)	185, 432
XceI	RCATGY	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465
XspI	CTAG	2 cut(s)	78, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.