Rw5G001670

SelT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003155
Physical Location & Seq
Reverse (-)
1452036 .. 1453137
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G001670.1

Sequence Viewer

Length: 564 bp
ATGGATCGAGCTCAGTTAGTTCTGGTTGCGTTGCCAATCCTTCTACCTCCAAAACCTACCCAGTATCATTATCACCAGATTGTTGATCCTGATGAACCAGACCCTGATCCCCAACCCGAACAGCAACAGATTCTCCAAGAGCCGCTTAAATTCCCAGTTCAGAAATCCGATGGCATTGGAGAAACTGGCATAGGAAGCACCATCAACATTGATTTTTGCACATCTTGTTCTTACAGAGGAAATGCAATAACAATGAAAAACATGCTGGCAACATCATATCCTGGGATCACTGTAATCTTAGCAAACCATCCTGCTTCATTTTCAAAACGTCTGCTGAGCAAATTGGTACCAGTTGTTCAAGTAGGAATCATCGGGACGATATTGGGTGGTGAGCACATTTTTCAAAGGTTGGGGATGTTTCGTGGATATTGGGTCACTCGCCCCGACCTGGCACCGGCCACACTAGGTTCGGCGACGCGGATTCCCAAACGACGTCGTATTGGGGGGGGGACTGAATGTGCAAAGGAGATCGGGGACGAGGAAAGTGGAGAGGGCTTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

187

Amino Acids

20.39

Weight (kDa)

6.42

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 496
Acc65I GGTACC 1 cut(s) 346
AccB1I GGYRCC 2 cut(s) 346, 451
AccII CGCG 1 cut(s) 478
AciI CCGC 2 cut(s) 143, 478
AclWI GGATC 4 cut(s) 12, 80, 101, 293
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 493
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 2 cut(s) 448, 454
AgsI TTSAA 3 cut(s) 324, 359, 404
AjnI CCWGG 2 cut(s) 280, 447
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw21I GWGCWC 2 cut(s) 13, 396
AlwI GGATC 4 cut(s) 12, 80, 101, 293
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 456
ApoI RAATTY 1 cut(s) 149
Asp718I GGTACC 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 65, 401
BanI GGYRCC 2 cut(s) 346, 451
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 2 cut(s) 13, 396
BccI CCATC 3 cut(s) 164, 209, 315
BciT130I CCWGG 2 cut(s) 282, 449
BfaI CTAG 1 cut(s) 464
BisI GCNGC 1 cut(s) 143
BlpI GCTNAGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 282, 449
BmiI GGNNCC 2 cut(s) 348, 453
BmrFI CCNGG 2 cut(s) 282, 449
BmrI ACTGGG 2 cut(s) 55, 149
BmuI ACTGGG 2 cut(s) 55, 149
Bpu1102I GCTNAGC 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 281
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 454
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 4 cut(s) 61, 155, 190, 350
BseBI CCWGG 2 cut(s) 282, 449
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 307, 420
BseLI CCNNNNNNNGG 2 cut(s) 448, 454
BseMII CTCAG 2 cut(s) 26, 326
BseNI ACTGG 4 cut(s) 61, 155, 190, 350
Bsh1236I CGCG 1 cut(s) 478
BshFI GGCC 1 cut(s) 458
BshNI GGYRCC 2 cut(s) 346, 451
BsiHKAI GWGCWC 2 cut(s) 13, 396
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 3 cut(s) 388, 523, 548
BslI CCNNNNNNNGG 2 cut(s) 448, 454
BsmFI GGGAC 3 cut(s) 388, 523, 548
BsnI GGCC 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 13, 396
Bsp143I GATC 5 cut(s) 4, 85, 106, 285, 528
Bsp1720I GCTNAGC 1 cut(s) 335
BspACI CCGC 2 cut(s) 143, 478
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 2 cut(s) 25, 327
BspFNI CGCG 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 348, 453
BspPI GGATC 4 cut(s) 12, 80, 101, 293
BspT107I GGYRCC 2 cut(s) 346, 451
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 4 cut(s) 61, 155, 190, 350
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 5 cut(s) 4, 85, 106, 285, 528
BssNI GRCGYC 1 cut(s) 493
Bst2UI CCWGG 2 cut(s) 282, 449
Bst4CI ACNGT 1 cut(s) 292
BstACI GRCGYC 1 cut(s) 493
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 12, 298, 335
BstF5I GGATG 2 cut(s) 307, 420
BstFNI CGCG 1 cut(s) 478
BstKTI GATC 5 cut(s) 7, 88, 109, 288, 531
BstMBI GATC 5 cut(s) 4, 85, 106, 285, 528
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNI CCWGG 2 cut(s) 282, 449
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 2 cut(s) 280, 447
BstUI CGCG 1 cut(s) 478
BsuRI GGCC 1 cut(s) 458
BtsCI GGATG 2 cut(s) 307, 420
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 454
CseI GACGC 1 cut(s) 484
Csp6I GTAC 1 cut(s) 347
CviAII CATG 1 cut(s) 262
CviJI RGCY 4 cut(s) 11, 142, 458, 555
CviKI_1 RGCY 4 cut(s) 11, 142, 458, 555
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 3 cut(s) 12, 298, 335
DpnI GATC 5 cut(s) 6, 87, 108, 287, 530
DpnII GATC 5 cut(s) 4, 85, 106, 285, 528
EaeI YGGCCR 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 280, 447
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 1 cut(s) 265
FaiI YATR 4 cut(s) 191, 263, 277, 562
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 3 cut(s) 388, 523, 548
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 2 cut(s) 294, 427
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 464
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 455
HgaI GACGC 1 cut(s) 484
Hin1I GRCGYC 1 cut(s) 493
Hin1II CATG 1 cut(s) 265
HinfI GANTC 3 cut(s) 130, 366, 481
HpaII CCGG 1 cut(s) 455
HphI GGTGA 2 cut(s) 65, 401
Hpy188I TCNGA 2 cut(s) 162, 169
Hpy188III TCNNGA 2 cut(s) 89, 373
Hpy99I CGWCG 3 cut(s) 478, 495, 498
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 328, 493
HpyCH4V TGCA 3 cut(s) 219, 245, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 3 cut(s) 12, 298, 335
HpySE526I ACGT 2 cut(s) 328, 493
Hsp92I GRCGYC 1 cut(s) 493
Hsp92II CATG 1 cut(s) 265
KpnI GGTACC 1 cut(s) 350
Kzo9I GATC 5 cut(s) 4, 85, 106, 285, 528
MaeI CTAG 1 cut(s) 464
MaeII ACGT 2 cut(s) 328, 493
MaeIII GTNAC 1 cut(s) 433
MalI GATC 5 cut(s) 6, 87, 108, 287, 530
MboI GATC 5 cut(s) 4, 85, 106, 285, 528
MhlI GDGCHC 2 cut(s) 13, 396
MluCI AATT 2 cut(s) 149, 341
MnlI CCTC 4 cut(s) 57, 230, 532, 544
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 282, 449
MvaI CCWGG 2 cut(s) 282, 449
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 1 cut(s) 195
NdeII GATC 5 cut(s) 4, 85, 106, 285, 528
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 348, 453
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 1 cut(s) 265
PfeI GAWTC 3 cut(s) 130, 366, 481
PkrI GCNGC 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 280, 447
PspGI CCWGG 2 cut(s) 280, 447
PspN4I GGNNCC 2 cut(s) 348, 453
PsrI GAACNNNNNNTAC 2 cut(s) 339, 371
PstNI CAGNNNCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 5 cut(s) 4, 85, 106, 285, 528
ScrFI CCNGG 2 cut(s) 282, 449
SduI GDGCHC 2 cut(s) 13, 396
SetI ASST 8 cut(s) 13, 49, 58, 331, 410, 450, 469, 496
Sse9I AATT 2 cut(s) 149, 341
SsiI CCGC 2 cut(s) 143, 478
SspMI CTAG 1 cut(s) 464
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 280, 447
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 2 cut(s) 331, 496
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 149, 341
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 3 cut(s) 130, 366, 481
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 3 cut(s) 108, 269, 306
TspRI CASTG 1 cut(s) 295
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 265
XspI CTAG 1 cut(s) 464
ZraI GACGTC 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.