Rh5DG489200

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003155
Physical Location & Seq
Forward (+)
76873377 .. 76875585
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG489200.1

Sequence Viewer

Length: 414 bp
ATGACCAAGATGCTAGAGGCTGCTTATCCTGGGATTGAAGTTGTTCTTTCAAACTATCCCCCAGCTTTACCAAAGCATCTGCTTAGCAAATTAGTTCCTGTTGTTCAATTTGGAATATTTGGGATTGTCATGGGGGGTGAGCAACTTTTCCCTACGGTGGGGATGGTACCCCCTCCTTGGTTTTACTCTCTGCGTGCGAATAGGTTTGGAACCATGGCATCTACTTGGCTTCTTGGTAATGCATTGCAGTCCTTCCTTCAAGGCACTGGCGCTTTTGAAGTTTCCCTCAACGATGAATTGATTTTCTCTAAGCTCCAGGAGGGAAGATTTCCAGGAGAGATTGAACTAAGAGATGCCATTGGCAGGAAGTTGGTCAATTCAGGAATCACAGGTGACGGGGCATTATGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

137

Amino Acids

14.94

Weight (kDa)

5.76

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 2 - 120 1.4e-09 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 166
AccB1I GGYRCC 1 cut(s) 166
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 4 cut(s) 157, 158, 177, 363
AgsI TTSAA 6 cut(s) 38, 51, 107, 260, 278, 344
AjnI CCWGG 3 cut(s) 28, 315, 331
AluBI AGCT 2 cut(s) 65, 313
AluI AGCT 2 cut(s) 65, 313
ApeKI GCWGC 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 42
Asp718I GGTACC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 149, 404
AvaII GGWCC 1 cut(s) 408
BanI GGYRCC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 3 cut(s) 30, 317, 333
BfaI CTAG 2 cut(s) 14, 412
BfoI RGCGCY 1 cut(s) 273
BisI GCNGC 1 cut(s) 21
BlpI GCTNAGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 3 cut(s) 30, 317, 333
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 168, 211
BmrFI CCNGG 3 cut(s) 30, 317, 333
BmsI GCATC 3 cut(s) 85, 227, 343
BpmI CTGGAG 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 29, 176, 213
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 158, 177, 363
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 3 cut(s) 30, 317, 333
BseDI CCNNGG 3 cut(s) 29, 176, 213
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 4 cut(s) 157, 158, 177, 363
BseMI GCAATG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 7
BseYI CCCAGC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 166
BslI CCNNNNNNNGG 4 cut(s) 157, 158, 177, 363
Bsp1720I GCTNAGC 1 cut(s) 83
Bsp19I CCATGG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 168, 211
BspT107I GGYRCC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 242
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 3 cut(s) 29, 176, 213
BssT1I CCWWGG 2 cut(s) 176, 213
Bst2UI CCWGG 3 cut(s) 30, 317, 333
Bst4CI ACNGT 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 83, 309, 347
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 1 cut(s) 272
BstNI CCWGG 3 cut(s) 30, 317, 333
BstSCI CCNGG 3 cut(s) 28, 315, 331
BstV1I GCAGC 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 167
CviAII CATG 2 cut(s) 130, 214
CviJI RGCY 4 cut(s) 20, 65, 229, 313
CviKI_1 RGCY 4 cut(s) 20, 65, 229, 313
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 3 cut(s) 83, 309, 347
Eco130I CCWWGG 2 cut(s) 176, 213
Eco47I GGWCC 1 cut(s) 408
EcoRII CCWGG 3 cut(s) 28, 315, 331
EcoT14I CCWWGG 2 cut(s) 176, 213
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 2 cut(s) 176, 213
FaeI CATG 2 cut(s) 133, 217
FaiI YATR 3 cut(s) 131, 215, 406
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 2 cut(s) 129, 213
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 14, 412
GlaI GCGC 1 cut(s) 271
GluI GCNGC 1 cut(s) 21
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 299
HaeII RGCGCY 1 cut(s) 273
HhaI GCGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 133, 217
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HinfI GANTC 1 cut(s) 384
HphI GGTGA 2 cut(s) 149, 404
Hpy188III TCNNGA 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 262, 266
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 242, 247
HpyF3I CTNAG 3 cut(s) 83, 309, 347
Hsp92II CATG 2 cut(s) 133, 217
HspAI GCGC 1 cut(s) 270
KpnI GGTACC 1 cut(s) 170
LmnI GCTCC 1 cut(s) 318
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 3 cut(s) 85, 227, 343
MaeI CTAG 2 cut(s) 14, 412
MaeIII GTNAC 1 cut(s) 392
MboII GAAGA 1 cut(s) 336
MluCI AATT 4 cut(s) 89, 107, 296, 376
MnlI CCTC 4 cut(s) 10, 183, 296, 313
Mph1103I ATGCAT 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 42
MspR9I CCNGG 3 cut(s) 30, 317, 333
MvaI CCWGG 3 cut(s) 30, 317, 333
NcoI CCATGG 1 cut(s) 213
NlaIII CATG 2 cut(s) 133, 217
NlaIV GGNNCC 2 cut(s) 168, 211
NmuCI GTSAC 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 384
PfoI TCCNGGA 2 cut(s) 315, 331
PkrI GCNGC 1 cut(s) 22
Psp6I CCWGG 3 cut(s) 28, 315, 331
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 3 cut(s) 28, 315, 331
PspN4I GGNNCC 2 cut(s) 168, 211
PspPI GGNCC 1 cut(s) 408
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SatI GCNGC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 408
ScrFI CCNGG 3 cut(s) 30, 317, 333
SetI ASST 5 cut(s) 67, 206, 315, 394, 413
SfaNI GCATC 3 cut(s) 85, 227, 343
SinI GGWCC 1 cut(s) 408
Sse9I AATT 4 cut(s) 89, 107, 296, 376
SspI AATATT 1 cut(s) 117
SspMI CTAG 2 cut(s) 14, 412
StyD4I CCNGG 3 cut(s) 28, 315, 331
StyI CCWWGG 2 cut(s) 176, 213
TaaI ACNGT 1 cut(s) 157
TasI AATT 4 cut(s) 89, 107, 296, 376
TfiI GAWTC 1 cut(s) 384
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 14, 412
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.