MD11G1071900.v1.1

SelT-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003155
Physical Location & Seq
Reverse (-)
6115317 .. 6117157
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1071900.v1.1.491

Sequence Viewer

Length: 699 bp
ATGGATCGAGCACAGCTTGTTCTGCTAGGGCTACCACTCTTCCTCTTCTGCACAGACCTCCTAAACCTCTTTACTCCGCCCCCTCCTCCGCCCCACAAGCCTCCTCACCACCACCATCCCCATCCCCATCCCCACCTCCAACACCAACACCAGCCTCCTCCAGTCGCCAAAGAAACCCTAGACTTCCCCTCAGAGAAACCAAGCGCTTTTGGGGCAATCGGCGTCGGCAGCACGGTCAAAATTAGCTTCTGCACTTCTTGCTCTTACAAGGGGAATGCGGTAACAGTGACGAAGATGTTGGAGGCTGCTTTCCCTGGAATCCATGTTGATCTTTCGAACTATCCTCCGCCCCTTCCAAAGCGTGTGGTCAGCAAGCTCGTTCCGGTTGCTCAAGTTGGAGTTTTTGGGATTGTAATGGCGGGTGAGCATATTTTTCCGATGTTGGGGTTTGCGACACCTCCTGCTTGGTATTATTCTCTGCGTGCAAATAGATTTGGTACCATTGCATCCACTTTGCTTCTTGGCAATGCATTGCAGTCCTTCCTCCAAGGCACTGGTGCTTTCGAAGTTTACCTCAACGATGAATTGGTTTTCTCTAAGCTGAAGGAGGGAAGATTTCCGGGCGAGCTTGAACTAAGAGATGCCATTGCAAGTAAGTTGGGTAGTTCAAGAATCACAGACTCAGCGTTATGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

233

Amino Acids

25.28

Weight (kDa)

8.44

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 78 - 216 2.8e-18 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 497
AciI CCGC 5 cut(s) 77, 89, 278, 347, 419
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 499
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 2 cut(s) 632, 669
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 5 cut(s) 16, 246, 376, 601, 628
AluI AGCT 5 cut(s) 16, 246, 376, 601, 628
Alw21I GWGCWC 1 cut(s) 13
AlwI GGATC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 228, 305
Asp718I GGTACC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 206
AsuC2I CCSGG 1 cut(s) 621
AsuHPI GGTGA 2 cut(s) 98, 434
AsuII TTCGAA 2 cut(s) 335, 564
BanI GGYRCC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 240, 292
BccI CCATC 3 cut(s) 123, 129, 135
BciT130I CCWGG 1 cut(s) 315
BcnI CCSGG 1 cut(s) 621
BfaI CTAG 2 cut(s) 26, 179
BfoI RGCGCY 1 cut(s) 207
BisI GCNGC 2 cut(s) 229, 306
BlsI GCNGC 2 cut(s) 230, 307
Bme1390I CCNGG 2 cut(s) 315, 621
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 2 cut(s) 315, 621
BmsI GCATC 2 cut(s) 515, 631
BpmI CTGGAG 1 cut(s) 144
Bpu14I TTCGAA 2 cut(s) 335, 564
BpuEI CTTGAG 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 313, 547
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 161, 559
Bse3DI GCAATG 4 cut(s) 501, 530, 532, 645
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 313, 547
BseGI GGATG 4 cut(s) 115, 121, 127, 506
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMI GCAATG 4 cut(s) 501, 530, 532, 645
BseMII CTCAG 2 cut(s) 204, 696
BseNI ACTGG 2 cut(s) 161, 559
BseRI GAGGAG 3 cut(s) 75, 93, 147
BseXI GCAGC 2 cut(s) 240, 292
BsgI GTGCAG 2 cut(s) 34, 235
BshNI GGYRCC 1 cut(s) 497
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 383, 620
BslI CCNNNNNNNGG 1 cut(s) 443
BsmI GAATGC 1 cut(s) 280
Bsp119I TTCGAA 2 cut(s) 335, 564
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 4, 328
BspACI CCGC 5 cut(s) 77, 89, 278, 347, 419
BspCNI CTCAG 2 cut(s) 203, 695
BspLI GGNNCC 1 cut(s) 499
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 2 cut(s) 335, 564
BspT107I GGYRCC 1 cut(s) 497
BsrDI GCAATG 4 cut(s) 501, 530, 532, 645
BsrI ACTGG 2 cut(s) 161, 559
BssECI CCNNGG 2 cut(s) 313, 547
BssMI GATC 2 cut(s) 4, 328
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 235, 286
Bst6I CTCTTC 2 cut(s) 44, 50
BstACI GRCGYC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 258
BstBI TTCGAA 2 cut(s) 335, 564
BstC8I GCNNGC 3 cut(s) 374, 483, 626
BstDEI CTNAG 5 cut(s) 190, 597, 635, 682, 696
BstF5I GGATG 4 cut(s) 115, 121, 127, 506
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 2 cut(s) 7, 331
BstMBI GATC 2 cut(s) 4, 328
BstMWI GCNNNNNNNGC 5 cut(s) 22, 97, 212, 228, 258
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 2 cut(s) 313, 619
BstV1I GCAGC 2 cut(s) 240, 292
BstXI CCANNNNNNTGG 1 cut(s) 554
BtsCI GGATG 4 cut(s) 115, 121, 127, 506
BtsIMutI CAGTG 2 cut(s) 291, 552
Cac8I GCNNGC 3 cut(s) 374, 483, 626
CfoI GCGC 1 cut(s) 206
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 498
CspCI CAANNNNNGTGG 2 cut(s) 345, 380
CviAII CATG 1 cut(s) 323
CviJI RGCY 9 cut(s) 16, 31, 100, 154, 246, 305, 376, 601, 628
CviKI_1 RGCY 9 cut(s) 16, 31, 100, 154, 246, 305, 376, 601, 628
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 5 cut(s) 190, 597, 635, 682, 696
DpnI GATC 2 cut(s) 6, 330
DpnII GATC 2 cut(s) 4, 328
Eam1104I CTCTTC 2 cut(s) 44, 50
EarI CTCTTC 2 cut(s) 44, 50
EciI GGCGGA 3 cut(s) 66, 78, 336
Eco130I CCWWGG 1 cut(s) 547
Eco47III AGCGCT 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 547
EcoT22I ATGCAT 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 1 cut(s) 326
FaiI YATR 3 cut(s) 324, 429, 691
FatI CATG 1 cut(s) 322
FauI CCCGC 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 229, 306
FokI GGATG 4 cut(s) 102, 108, 114, 493
Fsp4HI GCNGC 2 cut(s) 229, 306
FspBI CTAG 2 cut(s) 26, 179
GlaI GCGC 1 cut(s) 205
GluI GCNGC 2 cut(s) 229, 306
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 207
HapII CCGG 2 cut(s) 383, 620
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HinfI GANTC 3 cut(s) 318, 672, 680
HpaII CCGG 2 cut(s) 383, 620
HphI GGTGA 2 cut(s) 98, 434
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 2 cut(s) 193, 438
Hpy188III TCNNGA 1 cut(s) 669
Hpy8I GTNNAC 1 cut(s) 571
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 362, 550, 598
HpyCH4III ACNGT 2 cut(s) 235, 286
HpyCH4V TGCA 7 cut(s) 51, 252, 485, 506, 530, 535, 650
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 97, 212, 228, 258
HpyF3I CTNAG 5 cut(s) 190, 597, 635, 682, 696
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 1 cut(s) 204
KpnI GGTACC 1 cut(s) 501
Kzo9I GATC 2 cut(s) 4, 328
LpnPI CCDG 8 cut(s) 164, 174, 300, 327, 396, 474, 540, 633
Lsp1109I GCAGC 2 cut(s) 240, 292
LweI GCATC 2 cut(s) 515, 631
MaeI CTAG 2 cut(s) 26, 179
MaeIII GTNAC 2 cut(s) 280, 286
MalI GATC 2 cut(s) 6, 330
MboI GATC 2 cut(s) 4, 328
MboII GAAGA 4 cut(s) 31, 37, 304, 624
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 240, 584
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 3 cut(s) 163, 279, 376
Mph1103I ATGCAT 1 cut(s) 532
MspI CCGG 2 cut(s) 383, 620
MspR9I CCNGG 2 cut(s) 315, 621
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 5 cut(s) 22, 97, 212, 228, 258
NciI CCSGG 1 cut(s) 621
NdeII GATC 2 cut(s) 4, 328
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 532
NspV TTCGAA 2 cut(s) 335, 564
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 318, 672
PkrI GCNGC 2 cut(s) 230, 307
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 499
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
SatI GCNGC 2 cut(s) 229, 306
Sau3AI GATC 2 cut(s) 4, 328
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 2 cut(s) 315, 621
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 2 cut(s) 515, 631
SfuI TTCGAA 2 cut(s) 335, 564
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
Sse9I AATT 2 cut(s) 240, 584
SsiI CCGC 5 cut(s) 77, 89, 278, 347, 419
SspMI CTAG 2 cut(s) 26, 179
StyD4I CCNGG 2 cut(s) 313, 619
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 2 cut(s) 235, 286
TaqI TCGA 3 cut(s) 7, 335, 564
TasI AATT 2 cut(s) 240, 584
TfiI GAWTC 2 cut(s) 318, 672
TscAI CASTG 2 cut(s) 291, 559
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 2 cut(s) 228, 305
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 597
TspRI CASTG 2 cut(s) 291, 559
XspI CTAG 2 cut(s) 26, 179
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.