Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002367.1

Orthogroup ID

OG0003155

Physical Location & Seq

Genomic Coordinates Reverse (-)

22706 .. 24141

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002367.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggatcgcacccagatcgttcttctagggttaccactcttcctcttctgcttcgatgtccttaacctcttcactctccgaccaccaccgcctcctcctcacaaggctccccaccaccaccaccaccaccaccaccatgaccacctccaaaacaaaccacctccgctccccaaagacaccctagacttcccctcacagaaaccaatggctggagcagtggggggcggcaacacagtcaagattagcttctgcacctcttgctcttacaaggggacggcagtaacaatgaccaagatgctagacgctgcttatcctgggattgaagttgttctttcaaactatcccccagctttaccaaagcgtctgcttagcaaattagttcctgttgttcaatttggaatatttgggattgtcatggggggtgagcaacttttccctatggtggggatggtacctcctccatggttttactctttgcgtgcgaataggtttggaaccatggcatctacctggcttcttggtaatgcattgcagtccttccttcaaggcactggtgcttttgaagtttccctcaacgatgaattgattttctctaagctccaggagggaagatttccaggagagattgaactaagagatgccattggcaggaagttggtcaattcaggaatcacaggtgacggggcattatggacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rdx

Protein Analysis

232

Amino Acids

25.5

Weight (kDa)

8.79

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47300 AT5G58640 AT5G58640
fragaria_vesca	FvH4_3g38810 FvH4_6g11300
malus_domestica	MD03G1067200.v1.1 MD04G1155500.v1.1 MD11G1071900.v1.1 MD12G1168700.v1.1
prunus_persica	Prupe.6G055700_v2.0.a1 Prupe.6G279000_v2.0.a1
pyrus_communis	pycom11g06000 pycom12g16020
rosa_chinensis	RchiOBHm_Chr3g0462841 RchiOBHm_Chr5g0070001
rosa_laevigata	RLG00000024828 RLG00000036112
rosa_multiflora	Rmu_sc0000766.1_g000012 Rmu_sc0002367.1_g000004 Rmu_sc0030656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011060 Rroxscaffold_6G00417160
rosa_rugosa	Rorug03G0059600 Rorug03G0059600 Rorug05G0402000 Rorug05G0402100
rosa_samantha	Rh3AG117700 Rh3BG121500 Rh3CG124400 Rh3DG123100 Rh5AG458500 Rh5BG477200 Rh5CG500900 Rh5DG489200
rosa_wichuraiana	Rw3G009980 Rw5G001670 Rw5G042800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	3 cut(s)	89, 164, 225
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	4 cut(s)	209, 442, 443, 648
AgsI	TTSAA	6 cut(s)	323, 336, 392, 545, 563, 629
AjnI	CCWGG	4 cut(s)	313, 509, 600, 616
AluBI	AGCT	3 cut(s)	246, 350, 598
AluI	AGCT	3 cut(s)	246, 350, 598
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	693
AsuHPI	GGTGA	2 cut(s)	434, 689
AvaII	GGWCC	1 cut(s)	693
BanI	GGYRCC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	315, 511, 602, 618
BfaI	CTAG	4 cut(s)	26, 182, 299, 697
BisI	GCNGC	2 cut(s)	226, 306
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	2 cut(s)	227, 307
Bme1390I	CCNGG	4 cut(s)	315, 511, 602, 618
Bme18I	GGWCC	1 cut(s)	693
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	3 cut(s)	108, 453, 496
BmrFI	CCNGG	4 cut(s)	315, 511, 602, 618
BmsI	GCATC	3 cut(s)	285, 512, 628
BpmI	CTGGAG	2 cut(s)	231, 584
Bpu1102I	GCTNAGC	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	314, 461, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 442, 443, 648
Bse1I	ACTGG	1 cut(s)	556
Bse3DI	GCAATG	1 cut(s)	527
BseBI	CCWGG	4 cut(s)	315, 511, 602, 618
BseDI	CCNNGG	3 cut(s)	314, 461, 498
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	4 cut(s)	209, 442, 443, 648
BseMI	GCAATG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	3 cut(s)	84, 87, 447
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	4 cut(s)	209, 442, 443, 648
BsmFI	GGGAC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	4, 15
Bsp1720I	GCTNAGC	1 cut(s)	368
Bsp19I	CCATGG	2 cut(s)	461, 498
BspACI	CCGC	3 cut(s)	89, 164, 225
BspLI	GGNNCC	3 cut(s)	108, 453, 496
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	314, 461, 498
BssMI	GATC	2 cut(s)	4, 15
BssT1I	CCWWGG	2 cut(s)	461, 498
Bst2UI	CCWGG	4 cut(s)	315, 511, 602, 618
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	3 cut(s)	44, 50, 74
BstAPI	GCANNNNNTGC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	3 cut(s)	368, 594, 632
BstDSI	CCRYGG	2 cut(s)	461, 498
BstEII	GGTNACC	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	453
BstKTI	GATC	2 cut(s)	7, 18
BstMBI	GATC	2 cut(s)	4, 15
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	4 cut(s)	315, 511, 602, 618
BstPI	GGTNACC	1 cut(s)	30
BstSCI	CCNGG	4 cut(s)	313, 509, 600, 616
BstV1I	GCAGC	1 cut(s)	292
BtgI	CCRYGG	2 cut(s)	461, 498
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 549
Cac8I	GCNNGC	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	693
CseI	GACGC	2 cut(s)	311, 350
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	4 cut(s)	137, 415, 462, 499
CviJI	RGCY	6 cut(s)	107, 209, 246, 350, 514, 598
CviKI_1	RGCY	6 cut(s)	107, 209, 246, 350, 514, 598
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	3 cut(s)	368, 594, 632
DpnI	GATC	2 cut(s)	6, 17
DpnII	GATC	2 cut(s)	4, 15
Eam1104I	CTCTTC	3 cut(s)	44, 50, 74
EarI	CTCTTC	3 cut(s)	44, 50, 74
Eco130I	CCWWGG	2 cut(s)	461, 498
Eco47I	GGWCC	1 cut(s)	693
Eco91I	GGTNACC	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	30
EcoRII	CCWGG	4 cut(s)	313, 509, 600, 616
EcoT14I	CCWWGG	2 cut(s)	461, 498
EcoT22I	ATGCAT	1 cut(s)	529
ErhI	CCWWGG	2 cut(s)	461, 498
FaeI	CATG	4 cut(s)	140, 418, 465, 502
FaiI	YATR	6 cut(s)	138, 416, 440, 463, 500, 691
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 315, 347
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	4 cut(s)	136, 414, 461, 498
Fnu4HI	GCNGC	2 cut(s)	226, 306
FokI	GGATG	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	226, 306
FspBI	CTAG	4 cut(s)	26, 182, 299, 697
GluI	GCNGC	2 cut(s)	226, 306
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	231, 584
HgaI	GACGC	2 cut(s)	311, 350
Hin1II	CATG	4 cut(s)	140, 418, 465, 502
HinfI	GANTC	1 cut(s)	669
HphI	GGTGA	2 cut(s)	434, 689
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	238, 666
HpyAV	CCTTC	2 cut(s)	547, 551
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	252, 527, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	3 cut(s)	368, 594, 632
Hsp92II	CATG	4 cut(s)	140, 418, 465, 502
KpnI	GGTACC	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	4, 15
LmnI	GCTCC	4 cut(s)	112, 171, 212, 603
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	3 cut(s)	285, 512, 628
MaeI	CTAG	4 cut(s)	26, 182, 299, 697
MaeIII	GTNAC	3 cut(s)	30, 280, 677
MalI	GATC	2 cut(s)	6, 17
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	2 cut(s)	4, 15
MboII	GAAGA	5 cut(s)	14, 31, 37, 61, 621
MluCI	AATT	4 cut(s)	374, 392, 581, 661
MmeI	TCCRAC	1 cut(s)	103
Mph1103I	ATGCAT	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	135
MspR9I	CCNGG	4 cut(s)	315, 511, 602, 618
MvaI	CCWGG	4 cut(s)	315, 511, 602, 618
MwoI	GCNNNNNNNGC	1 cut(s)	258
NcoI	CCATGG	2 cut(s)	461, 498
NdeII	GATC	2 cut(s)	4, 15
NlaIII	CATG	4 cut(s)	140, 418, 465, 502
NlaIV	GGNNCC	3 cut(s)	108, 453, 496
NmuCI	GTSAC	1 cut(s)	677
NsiI	ATGCAT	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	669
PflMI	CCANNNNNTGG	1 cut(s)	209
PfoI	TCCNGGA	2 cut(s)	600, 616
PkrI	GCNGC	2 cut(s)	227, 307
Psp6I	CCWGG	4 cut(s)	313, 509, 600, 616
PspEI	GGTNACC	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	4 cut(s)	313, 509, 600, 616
PspN4I	GGNNCC	3 cut(s)	108, 453, 496
PspPI	GGNCC	1 cut(s)	693
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	226, 306
Sau3AI	GATC	2 cut(s)	4, 15
Sau96I	GGNCC	1 cut(s)	693
ScrFI	CCNGG	4 cut(s)	315, 511, 602, 618
SfaNI	GCATC	3 cut(s)	285, 512, 628
SinI	GGWCC	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	4 cut(s)	374, 392, 581, 661
SsiI	CCGC	3 cut(s)	89, 164, 225
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	4 cut(s)	26, 182, 299, 697
StyD4I	CCNGG	4 cut(s)	313, 509, 600, 616
StyI	CCWWGG	2 cut(s)	461, 498
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	54
TasI	AATT	4 cut(s)	374, 392, 581, 661
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	669
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	222, 556
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	1 cut(s)	594
TspRI	CASTG	2 cut(s)	222, 556
Van91I	CCANNNNNTGG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	693
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	4 cut(s)	26, 182, 299, 697
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.