FvH4_6g11300

SelT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003155
Physical Location & Seq
Reverse (-)
6725475 .. 6727221
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11300.t1

Sequence Viewer

Length: 699 bp
ATGGATCGAGCTCATATAGTTCTAGTTGTGTTACCAATCTTTCTGTTCTGCAGAGACATTTTCACCCTTTTCCAACCTAGACCTCCCAAACCTACCCAGTATCATTATCACCAGATTGCTGATCCTGATGAACCACCAGACCCTGATCCCCAAACCGAAGAGCAACAGATTCTCCAAGAGCCGCTTAAATTCCCAGTTCAGAAATCCAATGACGCCATTGGAGAAACTGTCATAGGAAGCACCATTAACATTGATTTTTGCACATCTTGTTCTTACAGAGGAAATGCAATAACAATGAAAAACATGTTGGCAACATCATATCCTGGGATCACTGTAATACTAGCAAACCACCCTGCTTCATTTCAAAAACGCTTGTTGAGCAAATTGGTACCAGTTGTTCAAGTAGGAATCATCGGAACTATTATAGGCGGCGAGCACATTTTTCAGAGGTTGGGGATGGTTCCACCACCTTCATGGTACCAGTCTTTGCAAGCCAATAGATTTGGTAGTATTGCAACCAGTTGGCTACTGGGGAACTTCTTGCAATCCTTTCTTCAAAGTACAGGAGCTTTTGAAGTTTATTGTAATGGTGAATTGATCTTTTCCAAGCTGAAGGAGCAGAGGTTCCCTAGTGAAATTGAGTTGAGGGATCTTCTAGGGAAGAAGCTTGCTAATTCGAGAAACACTCTTCGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

233

Amino Acids

26.1

Weight (kDa)

7.7

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 81 - 219 4.9e-18 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 388, 477
AccB1I GGYRCC 2 cut(s) 388, 477
AciI CCGC 2 cut(s) 182, 429
AclWI GGATC 5 cut(s) 12, 116, 140, 335, 657
AcoI YGGCCR 1 cut(s) 692
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 3 cut(s) 390, 479, 562
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 4 cut(s) 365, 401, 557, 575
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AloI GAACNNNNNNTCC 2 cut(s) 608, 640
AluBI AGCT 4 cut(s) 11, 569, 610, 667
AluI AGCT 4 cut(s) 11, 569, 610, 667
Alw21I GWGCWC 2 cut(s) 13, 438
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 5 cut(s) 12, 116, 140, 335, 657
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 1 cut(s) 692
ApoI RAATTY 1 cut(s) 188
Asp718I GGTACC 2 cut(s) 388, 477
AsuHPI GGTGA 3 cut(s) 55, 101, 602
BanI GGYRCC 2 cut(s) 388, 477
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 2 cut(s) 13, 438
BccI CCATC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 5 cut(s) 23, 78, 341, 630, 656
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 2 cut(s) 182, 430
BlsI GCNGC 2 cut(s) 183, 431
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 4 cut(s) 390, 462, 479, 626
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 3 cut(s) 91, 188, 539
BmuI ACTGGG 3 cut(s) 91, 188, 539
BplI GAGNNNNNCTC 1 cut(s) 670
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 323
BsaXI ACNNNNNCTCC 6 cut(s) 156, 186, 213, 243, 608, 638
Bse1I ACTGG 6 cut(s) 97, 194, 392, 481, 519, 534
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 462
BseNI ACTGG 6 cut(s) 97, 194, 392, 481, 519, 534
BshFI GGCC 1 cut(s) 694
BshNI GGYRCC 2 cut(s) 388, 477
BsiHKAI GWGCWC 2 cut(s) 13, 438
BsmAI GTCTC 1 cut(s) 48
BsnI GGCC 1 cut(s) 694
Bsp1286I GDGCHC 2 cut(s) 13, 438
Bsp143I GATC 6 cut(s) 4, 121, 145, 327, 597, 649
BspACI CCGC 2 cut(s) 182, 429
BspANI GGCC 1 cut(s) 694
BspLI GGNNCC 4 cut(s) 390, 462, 479, 626
BspMAI CTGCAG 1 cut(s) 53
BspPI GGATC 5 cut(s) 12, 116, 140, 335, 657
BspQI GCTCTTC 1 cut(s) 153
BspT107I GGYRCC 2 cut(s) 388, 477
BsrI ACTGG 6 cut(s) 97, 194, 392, 481, 519, 534
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 6 cut(s) 4, 121, 145, 327, 597, 649
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 229, 334
Bst6I CTCTTC 2 cut(s) 153, 693
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 434, 492, 669
BstF5I GGATG 1 cut(s) 462
BstKTI GATC 6 cut(s) 7, 124, 148, 330, 600, 652
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 6 cut(s) 4, 121, 145, 327, 597, 649
BstMWI GCNNNNNNNGC 2 cut(s) 378, 616
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 649
BstXI CCANNNNNNTGG 1 cut(s) 474
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 1 cut(s) 694
BtsCI GGATG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 3 cut(s) 434, 492, 669
CaiI CAGNNNCTG 1 cut(s) 143
CseI GACGC 1 cut(s) 221
Csp6I GTAC 3 cut(s) 389, 478, 561
CviAII CATG 3 cut(s) 304, 474, 696
CviJI RGCY 8 cut(s) 11, 181, 494, 526, 569, 610, 667, 694
CviKI_1 RGCY 8 cut(s) 11, 181, 494, 526, 569, 610, 667, 694
CviQI GTAC 3 cut(s) 389, 478, 561
DpnI GATC 6 cut(s) 6, 123, 147, 329, 599, 651
DpnII GATC 6 cut(s) 4, 121, 145, 327, 597, 649
EaeI YGGCCR 1 cut(s) 692
Eam1104I CTCTTC 2 cut(s) 153, 693
EarI CTCTTC 2 cut(s) 153, 693
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 632
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 3 cut(s) 307, 477, 699
FaiI YATR 8 cut(s) 15, 17, 233, 305, 319, 425, 475, 697
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 3 cut(s) 303, 473, 695
Fnu4HI GCNGC 2 cut(s) 182, 430
FokI GGATG 1 cut(s) 469
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 182, 430
FspBI CTAG 5 cut(s) 23, 78, 341, 630, 656
GluI GCNGC 2 cut(s) 182, 430
HaeIII GGCC 1 cut(s) 694
HgaI GACGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 3 cut(s) 307, 477, 699
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 2 cut(s) 169, 408
HphI GGTGA 3 cut(s) 55, 101, 602
Hpy188I TCNGA 3 cut(s) 201, 416, 447
Hpy188III TCNNGA 2 cut(s) 125, 678
HpyAV CCTTC 2 cut(s) 480, 607
HpyCH4III ACNGT 2 cut(s) 229, 334
HpyCH4V TGCA 6 cut(s) 51, 261, 287, 490, 515, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 616
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 3 cut(s) 307, 477, 699
KpnI GGTACC 2 cut(s) 392, 481
Kzo9I GATC 6 cut(s) 4, 121, 145, 327, 597, 649
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 566, 616
MaeI CTAG 5 cut(s) 23, 78, 341, 630, 656
MaeIII GTNAC 1 cut(s) 30
MalI GATC 6 cut(s) 6, 123, 147, 329, 599, 651
MboI GATC 6 cut(s) 4, 121, 145, 327, 597, 649
MboII GAAGA 5 cut(s) 170, 545, 644, 673, 680
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 13, 438
MluCI AATT 5 cut(s) 188, 383, 593, 636, 673
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 5 cut(s) 93, 272, 441, 615, 639
MseI TTAA 2 cut(s) 186, 246
MslI CAYNNNNRTG 1 cut(s) 472
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 378, 616
NdeII GATC 6 cut(s) 4, 121, 145, 327, 597, 649
NlaIII CATG 3 cut(s) 307, 477, 699
NlaIV GGNNCC 4 cut(s) 390, 462, 479, 626
NspI RCATGY 1 cut(s) 307
PciI ACATGT 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 169, 408
PkrI GCNGC 2 cut(s) 183, 431
PscI ACATGT 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 4 cut(s) 390, 462, 479, 626
PsrI GAACNNNNNNTAC 2 cut(s) 381, 413
PstI CTGCAG 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 3 cut(s) 390, 479, 562
RsaNI GTAC 3 cut(s) 389, 478, 561
RseI CAYNNNNRTG 1 cut(s) 472
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 186, 246
SatI GCNGC 2 cut(s) 182, 430
Sau3AI GATC 6 cut(s) 4, 121, 145, 327, 597, 649
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 2 cut(s) 13, 438
SfcI CTRYAG 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 472
Sse9I AATT 5 cut(s) 188, 383, 593, 636, 673
SsiI CCGC 2 cut(s) 182, 429
SspMI CTAG 5 cut(s) 23, 78, 341, 630, 656
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 2 cut(s) 229, 334
TaqI TCGA 2 cut(s) 7, 677
TasI AATT 5 cut(s) 188, 383, 593, 636, 673
TatI WGTACW 1 cut(s) 560
TauI GCSGC 2 cut(s) 184, 432
TfiI GAWTC 2 cut(s) 169, 408
Tru1I TTAA 2 cut(s) 186, 246
Tru9I TTAA 2 cut(s) 186, 246
TscAI CASTG 1 cut(s) 337
TspDTI ATGAA 4 cut(s) 144, 311, 348, 462
TspRI CASTG 1 cut(s) 337
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 2 cut(s) 471, 526
XspI CTAG 5 cut(s) 23, 78, 341, 630, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.