Prupe.6G055700_v2.0.a1

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003155
Physical Location & Seq
Reverse (-)
3922054 .. 3923878
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G055700.1

Sequence Viewer

Length: 681 bp
ATGGATCGCACACAGATTCTTCTGCTAGGGTTACCGCTCTTCCTCTTCTGCACCGACCTCCTAAACCTCTTCGCTCCACCTCCACCTCCGCCCCATAAGCCTCCCCACCATCACCATCACCATCACCACCTTCAACACCAACCATCACCAGTTGCCAAAGACTTCCCCTCACAGAAACCAAGCGCTGTTGGACTCGGAGCCGGCAGCACAGTCAAGATTAGTTTCTGCACCTCTTGCTCTTACAAGGGGAATGCACTAACAATAACAAAGATGTTGGAGTCTTCTTTTCCTGGAATTCATGTTGTTCTTTCGAATCACCCCCCACCCCTTCCAAAGCGTGTGCTCAGCAAGTTGGTTCCCGTTGCTCAAGTTGGAGTTTTTGGGATAGTAATGGCGGGCGAGCACATTTTTCCAATGTTGGGGATTATGACACCCCCGCCTTGGTATTACTCTCTGCGTGCAAATAGATTTGGGACCATTGCATCCACTTGGCTTCTTGGCAATGCATTGCAGTCCTTCCTCCAAGGCACTGGTGCTTTTGAAGTTTTCCTCAACGATGAATTGGTTTTCTCTAAGCTGAAGGAGGGAAGATTCCCAGGTGAGATTGAACTAAGGGATGACATTGCCGCGAAGTTGGGTAGTTCAAGAATCACAGATGGCCTTGGAGCTGCAGCTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

227

Amino Acids

24.54

Weight (kDa)

9.05

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 37
AccII CGCG 1 cut(s) 629
AciI CCGC 5 cut(s) 35, 89, 395, 437, 627
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 599
AfeI AGCGCT 1 cut(s) 184
AfiI CCNNNNNNNGG 2 cut(s) 419, 441
AgsI TTSAA 4 cut(s) 134, 542, 608, 645
AjnI CCWGG 2 cut(s) 289, 595
AluBI AGCT 3 cut(s) 577, 668, 674
AluI AGCT 3 cut(s) 577, 668, 674
Alw21I GWGCWC 2 cut(s) 345, 405
AlwI GGATC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 184
AoxI GGCC 1 cut(s) 658
ApeKI GCWGC 3 cut(s) 204, 668, 671
ApoI RAATTY 1 cut(s) 294
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 474
AsuHPI GGTGA 6 cut(s) 104, 110, 116, 138, 308, 611
AsuII TTCGAA 1 cut(s) 311
AvaII GGWCC 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 2 cut(s) 345, 405
BbvI GCAGC 2 cut(s) 216, 655
BccI CCATC 5 cut(s) 117, 123, 129, 151, 650
BciT130I CCWGG 2 cut(s) 291, 597
BfaI CTAG 2 cut(s) 26, 679
BfmI CTRYAG 1 cut(s) 669
BfoI RGCGCY 1 cut(s) 186
BisI GCNGC 4 cut(s) 205, 627, 669, 672
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 4 cut(s) 206, 628, 670, 673
Bme1390I CCNGG 2 cut(s) 291, 597
Bme18I GGWCC 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 3 cut(s) 199, 357, 475
BmrFI CCNGG 2 cut(s) 291, 597
BmsI GCATC 1 cut(s) 491
BpiI GAAGAC 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 344
Bpu14I TTCGAA 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 351
BsaJI CCNNGG 4 cut(s) 440, 523, 595, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 441
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 149, 535
Bse3DI GCAATG 4 cut(s) 477, 506, 508, 621
BseBI CCWGG 2 cut(s) 291, 597
BseDI CCNNGG 4 cut(s) 440, 523, 595, 661
BseGI GGATG 2 cut(s) 482, 622
BseLI CCNNNNNNNGG 2 cut(s) 419, 441
BseMI GCAATG 4 cut(s) 477, 506, 508, 621
BseMII CTCAG 1 cut(s) 358
BseNI ACTGG 2 cut(s) 149, 535
BseXI GCAGC 2 cut(s) 216, 655
BsgI GTGCAG 2 cut(s) 34, 211
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 1 cut(s) 660
BsiHKAI GWGCWC 2 cut(s) 345, 405
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 419, 441
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 660
Bsp119I TTCGAA 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 345, 405
Bsp143I GATC 1 cut(s) 4
Bsp1720I GCTNAGC 1 cut(s) 344
BspACI CCGC 5 cut(s) 35, 89, 395, 437, 627
BspANI GGCC 1 cut(s) 660
BspCNI CTCAG 1 cut(s) 357
BspFNI CGCG 1 cut(s) 629
BspLI GGNNCC 3 cut(s) 199, 357, 475
BspMAI CTGCAG 1 cut(s) 673
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 37
BsrDI GCAATG 4 cut(s) 477, 506, 508, 621
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 149, 535
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 4 cut(s) 440, 523, 595, 661
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 3 cut(s) 440, 523, 661
Bst2UI CCWGG 2 cut(s) 291, 597
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 3 cut(s) 44, 50, 74
BstAPI GCANNNNNTGC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 202, 397, 401, 459
BstDEI CTNAG 3 cut(s) 344, 573, 611
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 2 cut(s) 482, 622
BstFNI CGCG 1 cut(s) 629
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 2 cut(s) 97, 234
BstNI CCWGG 2 cut(s) 291, 597
BstPI GGTNACC 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 289, 595
BstSFI CTRYAG 1 cut(s) 669
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 2 cut(s) 216, 655
BstV2I GAAGAC 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 530
BsuRI GGCC 1 cut(s) 660
BtsCI GGATG 2 cut(s) 482, 622
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 4 cut(s) 202, 397, 401, 459
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 474
CviAII CATG 1 cut(s) 299
CviJI RGCY 7 cut(s) 100, 200, 493, 577, 660, 668, 674
CviKI_1 RGCY 7 cut(s) 100, 200, 493, 577, 660, 668, 674
DdeI CTNAG 3 cut(s) 344, 573, 611
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 3 cut(s) 44, 50, 74
EarI CTCTTC 3 cut(s) 44, 50, 74
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 3 cut(s) 440, 523, 661
Eco47I GGWCC 1 cut(s) 474
Eco47III AGCGCT 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 289, 595
EcoT14I CCWWGG 3 cut(s) 440, 523, 661
EcoT22I ATGCAT 1 cut(s) 508
ErhI CCWWGG 3 cut(s) 440, 523, 661
FaeI CATG 1 cut(s) 302
FaiI YATR 3 cut(s) 96, 300, 428
FaqI GGGAC 1 cut(s) 487
FatI CATG 1 cut(s) 298
FauI CCCGC 2 cut(s) 388, 444
Fnu4HI GCNGC 4 cut(s) 205, 627, 669, 672
FokI GGATG 2 cut(s) 469, 629
Fsp4HI GCNGC 4 cut(s) 205, 627, 669, 672
FspBI CTAG 2 cut(s) 26, 679
GlaI GCGC 1 cut(s) 184
GluI GCNGC 4 cut(s) 205, 627, 669, 672
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 1 cut(s) 660
HapII CCGG 1 cut(s) 201
HhaI GCGC 1 cut(s) 185
Hin1II CATG 1 cut(s) 302
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 6 cut(s) 16, 192, 278, 313, 591, 648
HpaII CCGG 1 cut(s) 201
HphI GGTGA 6 cut(s) 104, 110, 116, 138, 308, 611
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 2 cut(s) 214, 645
HpyAV CCTTC 4 cut(s) 140, 338, 526, 574
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 8 cut(s) 51, 228, 254, 461, 482, 506, 511, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 234
HpyF3I CTNAG 3 cut(s) 344, 573, 611
Hsp92II CATG 1 cut(s) 302
HspAI GCGC 1 cut(s) 183
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 4 cut(s) 79, 197, 665, 679
LpnPI CCDG 7 cut(s) 162, 214, 276, 303, 516, 582, 609
Lsp1109I GCAGC 2 cut(s) 216, 655
LweI GCATC 1 cut(s) 491
MaeI CTAG 2 cut(s) 26, 679
MaeIII GTNAC 1 cut(s) 30
MalI GATC 1 cut(s) 6
MbiI CCGCTC 1 cut(s) 37
MboI GATC 1 cut(s) 4
MboII GAAGA 6 cut(s) 11, 31, 37, 61, 273, 600
MhlI GDGCHC 2 cut(s) 345, 405
MluCI AATT 2 cut(s) 294, 560
MlyI GAGTC 2 cut(s) 186, 287
MmeI TCCRAC 3 cut(s) 169, 255, 352
Mph1103I ATGCAT 1 cut(s) 508
MroNI GCCGGC 1 cut(s) 200
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 291, 597
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 291, 597
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 2 cut(s) 97, 234
NaeI GCCGGC 1 cut(s) 202
NdeII GATC 1 cut(s) 4
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 3 cut(s) 199, 357, 475
NsiI ATGCAT 1 cut(s) 508
NspV TTCGAA 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 44
PctI GAATGC 1 cut(s) 256
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 4 cut(s) 16, 313, 591, 648
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 4 cut(s) 206, 628, 670, 673
PleI GAGTC 2 cut(s) 186, 286
PpsI GAGTC 2 cut(s) 186, 286
Psp6I CCWGG 2 cut(s) 289, 595
PspEI GGTNACC 1 cut(s) 30
PspGI CCWGG 2 cut(s) 289, 595
PspN4I GGNNCC 3 cut(s) 199, 357, 475
PspPI GGNCC 1 cut(s) 474
PstI CTGCAG 1 cut(s) 673
SapI GCTCTTC 1 cut(s) 44
SatI GCNGC 4 cut(s) 205, 627, 669, 672
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 2 cut(s) 186, 287
ScrFI CCNGG 2 cut(s) 291, 597
SduI GDGCHC 2 cut(s) 345, 405
SfaNI GCATC 1 cut(s) 491
SfcI CTRYAG 1 cut(s) 669
SfuI TTCGAA 1 cut(s) 311
SinI GGWCC 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 2 cut(s) 294, 560
SsiI CCGC 5 cut(s) 35, 89, 395, 437, 627
SspMI CTAG 2 cut(s) 26, 679
StyD4I CCNGG 2 cut(s) 289, 595
StyI CCWWGG 3 cut(s) 440, 523, 661
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 311
TasI AATT 2 cut(s) 294, 560
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 4 cut(s) 16, 313, 591, 648
TscAI CASTG 1 cut(s) 535
TseI GCWGC 3 cut(s) 204, 668, 671
TspDTI ATGAA 2 cut(s) 287, 573
TspRI CASTG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 1 cut(s) 294
XspI CTAG 2 cut(s) 26, 679
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.