Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030656.1

Orthogroup ID

OG0003155

Physical Location & Seq

Genomic Coordinates Reverse (-)

1367 .. 2800

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030656.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggatcgcacccagatcgttcttctagggttaccactcttcctcttctgcttcgatgtccttaacctcttcactctccgaccaccaccgcctcctcctcacaaggctccccaccaccaccaccaccaccaccatgaccacctccaaaacaaaccacctccgctccccaaagacaccctagacttcccctcacagaaaccaatggctggagcagtgggggtcggcaacacagtcaagattagcttctgcacctcttgctcttacaaggggacggcagtaacaatgaccaagatgctagacgctgcttatcctgggattgaagttgttctttccaactatcccccagctttaccaaagcgtctgcttagcaaattagttcctgttgttcaatttggaatatttgggattgtcatggggggtgagcaacttttccctatggtggggatggtacctcctccgtggttctactctttgcgtgcgaataggtttggaaccatggcatctacttggcttcttggtaatgcattacagtccttccttcaaggcactggcgcttttgaagtttccctcaacgatgaattgattttctctaagctccaggagggaagatttccaggagagattgaactaagagatgccattggcaggaagttggtcaattcaggaatcacaggtgacggggcattatggacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rdx

Protein Analysis

231

Amino Acids

25.4

Weight (kDa)

8.79

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47300 AT5G58640 AT5G58640
fragaria_vesca	FvH4_3g38810 FvH4_6g11300
malus_domestica	MD03G1067200.v1.1 MD04G1155500.v1.1 MD11G1071900.v1.1 MD12G1168700.v1.1
prunus_persica	Prupe.6G055700_v2.0.a1 Prupe.6G279000_v2.0.a1
pyrus_communis	pycom11g06000 pycom12g16020
rosa_chinensis	RchiOBHm_Chr3g0462841 RchiOBHm_Chr5g0070001
rosa_laevigata	RLG00000024828 RLG00000036112
rosa_multiflora	Rmu_sc0000766.1_g000012 Rmu_sc0002367.1_g000004 Rmu_sc0030656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011060 Rroxscaffold_6G00417160
rosa_rugosa	Rorug03G0059600 Rorug03G0059600 Rorug05G0402000 Rorug05G0402100
rosa_samantha	Rh3AG117700 Rh3BG121500 Rh3CG124400 Rh3DG123100 Rh5AG458500 Rh5BG477200 Rh5CG500900 Rh5DG489200
rosa_wichuraiana	Rw3G009980 Rw5G001670 Rw5G042800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	448
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	163
AciI	CCGC	2 cut(s)	89, 161
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	4 cut(s)	206, 439, 440, 645
AgsI	TTSAA	5 cut(s)	320, 389, 542, 560, 626
AjnI	CCWGG	3 cut(s)	310, 597, 613
AluBI	AGCT	3 cut(s)	243, 347, 595
AluI	AGCT	3 cut(s)	243, 347, 595
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	1 cut(s)	690
AsuHPI	GGTGA	2 cut(s)	431, 686
AvaII	GGWCC	1 cut(s)	690
BanI	GGYRCC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	439
BceAI	ACGGC	1 cut(s)	288
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	3 cut(s)	312, 599, 615
BfaI	CTAG	4 cut(s)	26, 179, 296, 694
BfoI	RGCGCY	1 cut(s)	555
BisI	GCNGC	1 cut(s)	303
BlpI	GCTNAGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	3 cut(s)	312, 599, 615
Bme18I	GGWCC	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	690
BmiI	GGNNCC	3 cut(s)	108, 450, 493
BmrFI	CCNGG	3 cut(s)	312, 599, 615
BmsI	GCATC	3 cut(s)	282, 509, 625
BpmI	CTGGAG	2 cut(s)	228, 581
Bpu1102I	GCTNAGC	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	311, 458, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 439, 440, 645
Bse1I	ACTGG	1 cut(s)	553
BseBI	CCWGG	3 cut(s)	312, 599, 615
BseDI	CCNNGG	3 cut(s)	311, 458, 495
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	4 cut(s)	206, 439, 440, 645
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	3 cut(s)	84, 87, 444
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	4 cut(s)	206, 439, 440, 645
BsmFI	GGGAC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	4, 15
Bsp1720I	GCTNAGC	1 cut(s)	365
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	2 cut(s)	89, 161
BspLI	GGNNCC	3 cut(s)	108, 450, 493
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	448
BsrBI	CCGCTC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	3 cut(s)	311, 458, 495
BssMI	GATC	2 cut(s)	4, 15
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	3 cut(s)	312, 599, 615
Bst4CI	ACNGT	2 cut(s)	232, 531
Bst6I	CTCTTC	3 cut(s)	44, 50, 74
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	365, 591, 629
BstDSI	CCRYGG	2 cut(s)	458, 495
BstEII	GGTNACC	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	450
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	2 cut(s)	7, 18
BstMBI	GATC	2 cut(s)	4, 15
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	3 cut(s)	312, 599, 615
BstPI	GGTNACC	1 cut(s)	30
BstSCI	CCNGG	3 cut(s)	310, 597, 613
BstV1I	GCAGC	1 cut(s)	289
BtgI	CCRYGG	2 cut(s)	458, 495
BtsCI	GGATG	1 cut(s)	450
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	219, 546
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	1 cut(s)	690
CseI	GACGC	2 cut(s)	308, 347
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	3 cut(s)	134, 412, 496
CviJI	RGCY	6 cut(s)	107, 206, 243, 347, 511, 595
CviKI_1	RGCY	6 cut(s)	107, 206, 243, 347, 511, 595
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	3 cut(s)	365, 591, 629
DpnI	GATC	2 cut(s)	6, 17
DpnII	GATC	2 cut(s)	4, 15
Eam1104I	CTCTTC	3 cut(s)	44, 50, 74
EarI	CTCTTC	3 cut(s)	44, 50, 74
Eco130I	CCWWGG	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	690
Eco91I	GGTNACC	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	30
EcoRII	CCWGG	3 cut(s)	310, 597, 613
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	3 cut(s)	137, 415, 499
FaiI	YATR	5 cut(s)	135, 413, 437, 497, 688
FalI	AAGNNNNNCTT	4 cut(s)	227, 259, 312, 344
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	3 cut(s)	133, 411, 495
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	4 cut(s)	26, 179, 296, 694
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	347
GsuI	CTGGAG	2 cut(s)	228, 581
HaeII	RGCGCY	1 cut(s)	555
HgaI	GACGC	2 cut(s)	308, 347
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	3 cut(s)	137, 415, 499
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HinfI	GANTC	1 cut(s)	666
HphI	GGTGA	2 cut(s)	431, 686
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	235, 663
HpyAV	CCTTC	2 cut(s)	544, 548
HpyCH4III	ACNGT	2 cut(s)	232, 531
HpyCH4V	TGCA	2 cut(s)	249, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	3 cut(s)	365, 591, 629
Hsp92II	CATG	3 cut(s)	137, 415, 499
HspAI	GCGC	1 cut(s)	552
KpnI	GGTACC	1 cut(s)	452
Kzo9I	GATC	2 cut(s)	4, 15
LmnI	GCTCC	4 cut(s)	112, 168, 209, 600
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	3 cut(s)	282, 509, 625
MaeI	CTAG	4 cut(s)	26, 179, 296, 694
MaeIII	GTNAC	3 cut(s)	30, 277, 674
MalI	GATC	2 cut(s)	6, 17
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	2 cut(s)	4, 15
MboII	GAAGA	5 cut(s)	14, 31, 37, 61, 618
MluCI	AATT	4 cut(s)	371, 389, 578, 658
MmeI	TCCRAC	2 cut(s)	103, 357
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	312, 599, 615
MvaI	CCWGG	3 cut(s)	312, 599, 615
MwoI	GCNNNNNNNGC	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	2 cut(s)	4, 15
NlaIII	CATG	3 cut(s)	137, 415, 499
NlaIV	GGNNCC	3 cut(s)	108, 450, 493
NmuCI	GTSAC	1 cut(s)	674
NsiI	ATGCAT	1 cut(s)	526
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	666
PflMI	CCANNNNNTGG	1 cut(s)	206
PfoI	TCCNGGA	2 cut(s)	597, 613
PkrI	GCNGC	1 cut(s)	304
Psp6I	CCWGG	3 cut(s)	310, 597, 613
PspEI	GGTNACC	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	3 cut(s)	310, 597, 613
PspN4I	GGNNCC	3 cut(s)	108, 450, 493
PspPI	GGNCC	1 cut(s)	690
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	4, 15
Sau96I	GGNCC	1 cut(s)	690
ScrFI	CCNGG	3 cut(s)	312, 599, 615
SfaNI	GCATC	3 cut(s)	282, 509, 625
SinI	GGWCC	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	4 cut(s)	371, 389, 578, 658
SsiI	CCGC	2 cut(s)	89, 161
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	4 cut(s)	26, 179, 296, 694
StyD4I	CCNGG	3 cut(s)	310, 597, 613
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	232, 531
TaqI	TCGA	1 cut(s)	54
TasI	AATT	4 cut(s)	371, 389, 578, 658
TfiI	GAWTC	1 cut(s)	666
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	219, 553
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	1 cut(s)	591
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	2 cut(s)	219, 553
Van91I	CCANNNNNTGG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	4 cut(s)	26, 179, 296, 694
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.