FvH4_3g38810

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003155
Physical Location & Seq
Forward (+)
33098484 .. 33100581
2098 bp
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UTR
Exon/CDS
Intron
FvH4_3g38810.t1

Sequence Viewer

Length: 672 bp
ATGGATCGCGCCCAGATCATTCTGCTAGGGTTACCACTCTTCCTCTTCTGCTTCGATATCCTTAACCTCTTCACTCTCCGACCACCACCGCCTCCGCCGCACAAGGCTCCCCATCACCTCCAAAACAAACCTCCACCGTTGCCCAAAGACTCCCTAGCCTTCCCCTCACAGAAACCAAGGGATGGAGCAATCGGCGTCGGCAACACAGTCAAGATTAGCTTCTGCACCTCTTGCTCTTACAAGGGGACTGCAGTAACAATGACCAAGATGATAGAGTCTGCTTTTCCTGGGATTGACATTGTTCTTTCAAACTATCCCCCAGCTTTACCAAAGCGTGTGCTTAGCAAACTAGTTCCTGTTGTTCAATTTGGAATGTTTGGGCTTGTCATGGGGGGTGAGCAACTTTTCCCTATGGTGGGGATGGCACCTCCTCCTTGGCTTTATTCTTTGCGTGCGAATAGGTTTGGAACCATGGCGTCGACTTGGCTTCTTGGTAATGCGCTCCAGTCCTTCCTTCAAGGCACTGGCGCTTTTGAAGTCTCTCTCAACGATGAATTGATTTTCTCCAAGCTCGAGGAAGGAAGATTTCCAGGAGAGATTGAACTAAGAGATGCAATTGGCAGGAAGTTGGTCAATTCAGGAATCACAGGTGATGGGGCATTATGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

224

Amino Acids

24.31

Weight (kDa)

9.05

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 69 - 206 5e-18 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 424
AccB7I CCANNNNNTGG 1 cut(s) 182
AccI GTMKAC 1 cut(s) 479
AccII CGCG 1 cut(s) 9
AciI CCGC 3 cut(s) 89, 95, 98
AclWI GGATC 1 cut(s) 12
AcyI GRCGYC 2 cut(s) 195, 476
AfiI CCNNNNNNNGG 3 cut(s) 182, 415, 416
AgsI TTSAA 5 cut(s) 309, 365, 518, 536, 602
AhlI ACTAGT 1 cut(s) 349
AjnI CCWGG 2 cut(s) 286, 589
AluBI AGCT 3 cut(s) 219, 323, 571
AluI AGCT 3 cut(s) 219, 323, 571
Alw26I GTCTC 1 cut(s) 544
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 572
AspLEI GCGC 3 cut(s) 11, 502, 530
AspS9I GGNCC 1 cut(s) 666
AsuHPI GGTGA 3 cut(s) 107, 407, 662
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 666
BanI GGYRCC 1 cut(s) 424
BccI CCATC 4 cut(s) 120, 176, 415, 647
BciT130I CCWGG 2 cut(s) 288, 591
BcoDI GTCTC 1 cut(s) 544
BcuI ACTAGT 1 cut(s) 349
BfaI CTAG 4 cut(s) 26, 155, 350, 670
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 531
BisI GCNGC 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 2 cut(s) 288, 591
Bme18I GGWCC 1 cut(s) 666
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 666
BmiI GGNNCC 3 cut(s) 108, 426, 469
BmrFI CCNGG 2 cut(s) 288, 591
BmsI GCATC 1 cut(s) 601
BpmI CTGGAG 1 cut(s) 488
Bpu1102I GCTNAGC 1 cut(s) 341
BsaHI GRCGYC 2 cut(s) 195, 476
BsaJI CCNNGG 4 cut(s) 176, 287, 434, 471
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 415, 416
Bse1I ACTGG 2 cut(s) 505, 529
BseBI CCWGG 2 cut(s) 288, 591
BseDI CCNNGG 4 cut(s) 176, 287, 434, 471
BseGI GGATG 2 cut(s) 187, 426
BseLI CCNNNNNNNGG 3 cut(s) 182, 415, 416
BseNI ACTGG 2 cut(s) 505, 529
BseRI GAGGAG 1 cut(s) 420
BseYI CCCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 572
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 3 cut(s) 182, 415, 416
BsmAI GTCTC 1 cut(s) 544
BsmFI GGGAC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 572
Bsp143I GATC 2 cut(s) 4, 15
Bsp1720I GCTNAGC 1 cut(s) 341
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 3 cut(s) 89, 95, 98
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 3 cut(s) 108, 426, 469
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 424
BsrI ACTGG 2 cut(s) 505, 529
BssECI CCNNGG 4 cut(s) 176, 287, 434, 471
BssMI GATC 2 cut(s) 4, 15
BssNI GRCGYC 2 cut(s) 195, 476
BssT1I CCWWGG 3 cut(s) 176, 434, 471
Bst2UI CCWGG 2 cut(s) 288, 591
Bst4CI ACNGT 2 cut(s) 138, 208
Bst6I CTCTTC 3 cut(s) 44, 50, 74
BstACI GRCGYC 2 cut(s) 195, 476
BstAPI GCANNNNNTGC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 2 cut(s) 341, 605
BstDSI CCRYGG 1 cut(s) 471
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 2 cut(s) 187, 426
BstFNI CGCG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 3 cut(s) 11, 502, 530
BstKTI GATC 2 cut(s) 7, 18
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 2 cut(s) 4, 15
BstMWI GCNNNNNNNGC 2 cut(s) 97, 231
BstNI CCWGG 2 cut(s) 288, 591
BstPI GGTNACC 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 286, 589
BstSFI CTRYAG 1 cut(s) 249
BstUI CGCG 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 2 cut(s) 187, 426
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 453
CfoI GCGC 3 cut(s) 11, 502, 530
Cfr13I GGNCC 1 cut(s) 666
CseI GACGC 2 cut(s) 184, 465
CviAII CATG 2 cut(s) 388, 472
CviJI RGCY 8 cut(s) 107, 158, 219, 323, 382, 439, 487, 571
CviKI_1 RGCY 8 cut(s) 107, 158, 219, 323, 382, 439, 487, 571
DdeI CTNAG 2 cut(s) 341, 605
DpnI GATC 2 cut(s) 6, 17
DpnII GATC 2 cut(s) 4, 15
Eam1104I CTCTTC 3 cut(s) 44, 50, 74
EarI CTCTTC 3 cut(s) 44, 50, 74
EciI GGCGGA 1 cut(s) 84
Eco130I CCWWGG 3 cut(s) 176, 434, 471
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 666
Eco88I CYCGRG 1 cut(s) 572
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 286, 589
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 3 cut(s) 176, 434, 471
ErhI CCWWGG 3 cut(s) 176, 434, 471
FaeI CATG 2 cut(s) 391, 475
FaiI YATR 4 cut(s) 389, 413, 473, 664
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 259
FatI CATG 2 cut(s) 387, 471
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 2 cut(s) 194, 433
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 4 cut(s) 26, 155, 350, 670
GlaI GCGC 3 cut(s) 10, 501, 529
GluI GCNGC 1 cut(s) 98
GsaI CCCAGC 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 488
HaeII RGCGCY 1 cut(s) 531
HgaI GACGC 2 cut(s) 184, 465
HhaI GCGC 3 cut(s) 11, 502, 530
Hin1I GRCGYC 2 cut(s) 195, 476
Hin1II CATG 2 cut(s) 391, 475
Hin6I GCGC 3 cut(s) 9, 500, 528
HinP1I GCGC 3 cut(s) 9, 500, 528
HincII GTYRAC 1 cut(s) 480
HindII GTYRAC 1 cut(s) 480
HinfI GANTC 3 cut(s) 149, 275, 642
HphI GGTGA 3 cut(s) 107, 407, 662
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 211, 639
Hpy8I GTNNAC 1 cut(s) 480
Hpy99I CGWCG 2 cut(s) 200, 481
HpyAV CCTTC 4 cut(s) 169, 520, 524, 572
HpyCH4III ACNGT 2 cut(s) 138, 208
HpyCH4V TGCA 3 cut(s) 225, 251, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 231
HpyF3I CTNAG 2 cut(s) 341, 605
Hsp92I GRCGYC 2 cut(s) 195, 476
Hsp92II CATG 2 cut(s) 391, 475
HspAI GCGC 3 cut(s) 9, 500, 528
Kzo9I GATC 2 cut(s) 4, 15
LmnI GCTCC 3 cut(s) 112, 185, 507
LweI GCATC 1 cut(s) 601
MaeI CTAG 4 cut(s) 26, 155, 350, 670
MaeIII GTNAC 2 cut(s) 30, 253
MalI GATC 2 cut(s) 6, 17
MboI GATC 2 cut(s) 4, 15
MboII GAAGA 4 cut(s) 31, 37, 61, 594
MfeI CAATTG 1 cut(s) 615
MluCI AATT 4 cut(s) 365, 554, 615, 634
MlyI GAGTC 2 cut(s) 143, 284
MmeI TCCRAC 1 cut(s) 103
MseI TTAA 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 288, 591
MunI CAATTG 1 cut(s) 615
MvaI CCWGG 2 cut(s) 288, 591
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 97, 231
NcoI CCATGG 1 cut(s) 471
NdeII GATC 2 cut(s) 4, 15
NlaIII CATG 2 cut(s) 391, 475
NlaIV GGNNCC 3 cut(s) 108, 426, 469
PaeR7I CTCGAG 1 cut(s) 572
PfeI GAWTC 1 cut(s) 642
PflMI CCANNNNNTGG 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 2 cut(s) 143, 283
PpsI GAGTC 2 cut(s) 143, 283
Psp6I CCWGG 2 cut(s) 286, 589
PspEI GGTNACC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 319
PspGI CCWGG 2 cut(s) 286, 589
PspN4I GGNNCC 3 cut(s) 108, 426, 469
PspPI GGNCC 1 cut(s) 666
PspXI VCTCGAGB 1 cut(s) 572
PstI CTGCAG 1 cut(s) 253
SalI GTCGAC 1 cut(s) 478
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 4, 15
Sau96I GGNCC 1 cut(s) 666
SchI GAGTC 2 cut(s) 143, 284
ScrFI CCNGG 2 cut(s) 288, 591
SfaNI GCATC 1 cut(s) 601
SfcI CTRYAG 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 572
SinI GGWCC 1 cut(s) 666
SlaI CTCGAG 1 cut(s) 572
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
SpeI ACTAGT 1 cut(s) 349
Sse9I AATT 4 cut(s) 365, 554, 615, 634
SsiI CCGC 3 cut(s) 89, 95, 98
SspMI CTAG 4 cut(s) 26, 155, 350, 670
StyD4I CCNGG 2 cut(s) 286, 589
StyI CCWWGG 3 cut(s) 176, 434, 471
TaaI ACNGT 2 cut(s) 138, 208
TaqI TCGA 3 cut(s) 54, 479, 573
TasI AATT 4 cut(s) 365, 554, 615, 634
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 642
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 529
TspDTI ATGAA 1 cut(s) 567
TspRI CASTG 1 cut(s) 529
Van91I CCANNNNNTGG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 666
XhoI CTCGAG 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 479
XspI CTAG 4 cut(s) 26, 155, 350, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.