Rroxscaffold_1G00011060

Rdx family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003155
Physical Location & Seq
Reverse (-)
14077555 .. 14079277
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011060.1

Sequence Viewer

Length: 696 bp
ATGGATCGCACCCAGATCGTTCTTCTAGGGTTACCACTCTTCCTCTTCTGCTTCGATGTCCTTAACCTCTTCACTCTCCGACCACCACCGCCTCCTCCTCACAAGGCTCCCCACCACCACCATCACCACCACCATGACCACCTCCAAAACAAACCACCTCCACTCCCTAAAGACACCCTAGACTTCCCCTCACAGAAACCAATCGCTGGAGCAGTGGGGGTCGGCAACACAGTCAAGATTAGTTTCTGCACCTCTTGCTCTTACAAGGGGACTGCAGTAACAATGACCAAGATGCTAGAGGCTGCTTATCCTGGGATTGAAGTTGTTCTTTCAAACTATCCCCCAGCTTTACCAAAGCGCCTGCTTAGCAAATTAGTTCCTGTTGTTCAATTTGGAATATTTGGGATTGTCATGGGGGGTGAGCAACTTTTCCCTATGGTGGGGATGGTACCTCCTCCTTGGTTTTACTCTTTGCGTGCGAATAGGTTCGGAACCATGGCATCTACTTGGCTTCTTGGTAATGCATTGCAGTCCTTCCTTCAAGGCACCGGCGCTTTTGAAGTTTCCCTCAACGATGAATTGATTTTCACTAAGCTCCAGGAGGGAAGATTTCCAGGAGAGATTGAACTGAGAGATGCCATTGGCAGGAAGTTGGTCAATTCAGGAATCACAGGTGACGGGGCATTATGGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

231

Amino Acids

25.41

Weight (kDa)

8.79

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 77 - 214 3.4e-17 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 2 cut(s) 448, 545
AccB7I CCANNNNNTGG 1 cut(s) 206
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 4 cut(s) 206, 439, 440, 645
AgsI TTSAA 6 cut(s) 320, 333, 389, 542, 560, 626
AjnI CCWGG 3 cut(s) 310, 597, 613
AluBI AGCT 2 cut(s) 347, 595
AluI AGCT 2 cut(s) 347, 595
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 302
Asp700I GAANNNNTTC 2 cut(s) 324, 485
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 2 cut(s) 360, 554
AsuHPI GGTGA 3 cut(s) 116, 431, 686
BanI GGYRCC 2 cut(s) 448, 545
BbvI GCAGC 1 cut(s) 289
BccI CCATC 2 cut(s) 129, 439
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 312, 599, 615
BfaI CTAG 3 cut(s) 26, 179, 296
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 2 cut(s) 361, 555
BisI GCNGC 1 cut(s) 303
BlpI GCTNAGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 3 cut(s) 312, 599, 615
BmiI GGNNCC 4 cut(s) 108, 450, 493, 547
BmrFI CCNGG 3 cut(s) 312, 599, 615
BmsI GCATC 3 cut(s) 282, 509, 625
BpmI CTGGAG 2 cut(s) 228, 581
Bpu1102I GCTNAGC 1 cut(s) 365
BsaJI CCNNGG 3 cut(s) 311, 458, 495
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 439, 440, 645
Bse118I RCCGGY 1 cut(s) 548
Bse3DI GCAATG 1 cut(s) 524
BseBI CCWGG 3 cut(s) 312, 599, 615
BseDI CCNNGG 3 cut(s) 311, 458, 495
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 4 cut(s) 206, 439, 440, 645
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 1 cut(s) 620
BseRI GAGGAG 3 cut(s) 84, 87, 444
BseXI GCAGC 1 cut(s) 289
BseYI CCCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 232
BshNI GGYRCC 2 cut(s) 448, 545
BsiSI CCGG 1 cut(s) 549
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 4 cut(s) 206, 439, 440, 645
BsmFI GGGAC 1 cut(s) 283
Bsp143I GATC 2 cut(s) 4, 15
Bsp1720I GCTNAGC 1 cut(s) 365
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 621
BspLI GGNNCC 4 cut(s) 108, 450, 493, 547
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 448, 545
BsrDI GCAATG 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 548
BssECI CCNNGG 3 cut(s) 311, 458, 495
BssMI GATC 2 cut(s) 4, 15
BssT1I CCWWGG 2 cut(s) 458, 495
Bst2UI CCWGG 3 cut(s) 312, 599, 615
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 3 cut(s) 44, 50, 74
BstAPI GCANNNNNTGC 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 362, 477
BstDEI CTNAG 3 cut(s) 365, 591, 629
BstDSI CCRYGG 1 cut(s) 495
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 450
BstH2I RGCGCY 2 cut(s) 361, 555
BstHHI GCGC 2 cut(s) 360, 554
BstKTI GATC 2 cut(s) 7, 18
BstMBI GATC 2 cut(s) 4, 15
BstMWI GCNNNNNNNGC 2 cut(s) 255, 366
BstNI CCWGG 3 cut(s) 312, 599, 615
BstPI GGTNACC 1 cut(s) 30
BstSCI CCNGG 3 cut(s) 310, 597, 613
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 289
BtgI CCRYGG 1 cut(s) 495
BtsCI GGATG 1 cut(s) 450
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 362, 477
CfoI GCGC 2 cut(s) 360, 554
Cfr10I RCCGGY 1 cut(s) 548
Csp6I GTAC 1 cut(s) 449
CviAII CATG 3 cut(s) 134, 412, 496
CviJI RGCY 5 cut(s) 107, 302, 347, 511, 595
CviKI_1 RGCY 5 cut(s) 107, 302, 347, 511, 595
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 3 cut(s) 365, 591, 629
DpnI GATC 2 cut(s) 6, 17
DpnII GATC 2 cut(s) 4, 15
Eam1104I CTCTTC 3 cut(s) 44, 50, 74
EarI CTCTTC 3 cut(s) 44, 50, 74
Eco130I CCWWGG 2 cut(s) 458, 495
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRII CCWGG 3 cut(s) 310, 597, 613
EcoT14I CCWWGG 2 cut(s) 458, 495
EcoT22I ATGCAT 1 cut(s) 526
ErhI CCWWGG 2 cut(s) 458, 495
FaeI CATG 3 cut(s) 137, 415, 499
FaiI YATR 5 cut(s) 135, 413, 437, 497, 688
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 133, 411, 495
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 1 cut(s) 457
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 3 cut(s) 26, 179, 296
GlaI GCGC 2 cut(s) 359, 553
GluI GCNGC 1 cut(s) 303
GsaI CCCAGC 1 cut(s) 347
GsuI CTGGAG 2 cut(s) 228, 581
HaeII RGCGCY 2 cut(s) 361, 555
HapII CCGG 1 cut(s) 549
HhaI GCGC 2 cut(s) 360, 554
Hin1II CATG 3 cut(s) 137, 415, 499
Hin6I GCGC 2 cut(s) 358, 552
HinP1I GCGC 2 cut(s) 358, 552
HinfI GANTC 1 cut(s) 666
HpaII CCGG 1 cut(s) 549
HphI GGTGA 3 cut(s) 116, 431, 686
Hpy188I TCNGA 2 cut(s) 80, 491
Hpy188III TCNNGA 2 cut(s) 235, 663
HpyAV CCTTC 2 cut(s) 544, 548
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 692
HpyCH4V TGCA 4 cut(s) 249, 275, 524, 529
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 366
HpyF3I CTNAG 3 cut(s) 365, 591, 629
HpySE526I ACGT 1 cut(s) 692
Hsp92II CATG 3 cut(s) 137, 415, 499
HspAI GCGC 2 cut(s) 358, 552
KpnI GGTACC 1 cut(s) 452
Kzo9I GATC 2 cut(s) 4, 15
LmnI GCTCC 3 cut(s) 112, 209, 600
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 3 cut(s) 282, 509, 625
MaeI CTAG 3 cut(s) 26, 179, 296
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 3 cut(s) 30, 277, 674
MalI GATC 2 cut(s) 6, 17
MboI GATC 2 cut(s) 4, 15
MboII GAAGA 5 cut(s) 14, 31, 37, 61, 618
MluCI AATT 4 cut(s) 371, 389, 578, 658
MmeI TCCRAC 1 cut(s) 103
Mph1103I ATGCAT 1 cut(s) 526
MroXI GAANNNNTTC 2 cut(s) 324, 485
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 549
MspR9I CCNGG 3 cut(s) 312, 599, 615
MvaI CCWGG 3 cut(s) 312, 599, 615
MwoI GCNNNNNNNGC 2 cut(s) 255, 366
NcoI CCATGG 1 cut(s) 495
NdeII GATC 2 cut(s) 4, 15
NlaIII CATG 3 cut(s) 137, 415, 499
NlaIV GGNNCC 4 cut(s) 108, 450, 493, 547
NmuCI GTSAC 1 cut(s) 674
NsiI ATGCAT 1 cut(s) 526
PdmI GAANNNNTTC 2 cut(s) 324, 485
PfeI GAWTC 1 cut(s) 666
PflMI CCANNNNNTGG 1 cut(s) 206
PfoI TCCNGGA 2 cut(s) 597, 613
PkrI GCNGC 1 cut(s) 304
Psp6I CCWGG 3 cut(s) 310, 597, 613
PspEI GGTNACC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 3 cut(s) 310, 597, 613
PspN4I GGNNCC 4 cut(s) 108, 450, 493, 547
PstI CTGCAG 1 cut(s) 277
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 4, 15
ScrFI CCNGG 3 cut(s) 312, 599, 615
SfaNI GCATC 3 cut(s) 282, 509, 625
SfcI CTRYAG 1 cut(s) 273
SgrAI CRCCGGYG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 4 cut(s) 371, 389, 578, 658
SsiI CCGC 1 cut(s) 89
SspI AATATT 1 cut(s) 399
SspMI CTAG 3 cut(s) 26, 179, 296
StyD4I CCNGG 3 cut(s) 310, 597, 613
StyI CCWWGG 2 cut(s) 458, 495
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 695
TaqI TCGA 1 cut(s) 54
TasI AATT 4 cut(s) 371, 389, 578, 658
TfiI GAWTC 1 cut(s) 666
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 1 cut(s) 591
TspRI CASTG 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 206
XmnI GAANNNNTTC 2 cut(s) 324, 485
XspI CTAG 3 cut(s) 26, 179, 296
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.