Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003155

Physical Location & Seq

Genomic Coordinates Forward (+)

18465074 .. 18466351

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGATCGAGCTCTGTTAGTTCTGGTAGGGTTATCGATCTTCCTGTTCTGCACTGATATTTTTAACCTTTTCACGCTCAAACCTCCCAAAACTACCACTCATTATCCTCTTCTTGATGCCGATGATCCTCACCAAGCAGACCCCCAGCTAGAAAAGCTTCTCCAAGAGCCCCTCAAATTCCCCACCCACCAGAAATCTAATGGCTTTGGGGGAGCTGGCATTGGAAGCACCATCAATATTGATTTCTGTACATCTTGTTCTTACAGAGGAACTGCAATAACATTGAAAAACATGCTGGTAACATCATTTCCCGGGGTCGATGTAATACTGGCAAACCACCACCCTCCCCTTCCAAGACGCCTGCTGAGCAAACTGATACCGGTTGTTCAAGTAGGAATCATCGGGACTATAATGGCCGGAAAACATGTTTTCTCGAGGCTGGGGATAACGACACCACCTCCTTGGTACCAGACCCTGCAAGCAAATAGGTTTGGAAGTATGGCAAGCACTTGGCTTTTGGGAAACTTCATCCAATCCTTCCTCCAAAGCACAGGAGCGTTTGAAGTGTATTGTAATGGTGAATTGGTCTTCTCAAAGCTGAAGGAGCAGAGGTTCCCCAGTGAAACTGAGTTGAGGGATCTCGTCGGAAAGAAGCTTGGAGGAGGGGTCTGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rdx

Protein Analysis

226

Amino Acids

24.81

Weight (kDa)

8.91

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47300 AT5G58640 AT5G58640
fragaria_vesca	FvH4_3g38810 FvH4_6g11300
malus_domestica	MD03G1067200.v1.1 MD04G1155500.v1.1 MD11G1071900.v1.1 MD12G1168700.v1.1
prunus_persica	Prupe.6G055700_v2.0.a1 Prupe.6G279000_v2.0.a1
pyrus_communis	pycom11g06000 pycom12g16020
rosa_chinensis	RchiOBHm_Chr3g0462841 RchiOBHm_Chr5g0070001
rosa_laevigata	RLG00000024828 RLG00000036112
rosa_multiflora	Rmu_sc0000766.1_g000012 Rmu_sc0002367.1_g000004 Rmu_sc0030656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011060 Rroxscaffold_6G00417160
rosa_rugosa	Rorug03G0059600 Rorug03G0059600 Rorug05G0402000 Rorug05G0402100
rosa_samantha	Rh3AG117700 Rh3BG121500 Rh3CG124400 Rh3DG123100 Rh5AG458500 Rh5BG477200 Rh5CG500900 Rh5DG489200
rosa_wichuraiana	Rw3G009980 Rw5G001670 Rw5G042800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AclWI	GGATC	3 cut(s)	12, 119, 645
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	2 cut(s)	250, 467
AflIII	ACRYGT	1 cut(s)	424
AgeI	ACCGGT	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	286, 389, 563
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
AluBI	AGCT	6 cut(s)	11, 148, 157, 215, 598, 655
AluI	AGCT	6 cut(s)	11, 148, 157, 215, 598, 655
Alw21I	GWGCWC	1 cut(s)	13
AlwI	GGATC	3 cut(s)	12, 119, 645
AlwNI	CAGNNNCTG	1 cut(s)	475
Ama87I	CYCGRG	2 cut(s)	311, 433
AoxI	GGCC	2 cut(s)	414, 671
ApoI	RAATTY	1 cut(s)	176
AsiGI	ACCGGT	1 cut(s)	379
Asp700I	GAANNNNTTC	1 cut(s)	156
Asp718I	GGTACC	1 cut(s)	465
AsuC2I	CCSGG	2 cut(s)	312, 313
AsuHPI	GGTGA	2 cut(s)	122, 590
AvaI	CYCGRG	2 cut(s)	311, 433
BanI	GGYRCC	1 cut(s)	465
BanII	GRGCYC	2 cut(s)	13, 171
BbsI	GAAGAC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	312, 313
BfaI	CTAG	1 cut(s)	149
BlpI	GCTNAGC	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	312, 313
BmeT110I	CYCGRG	2 cut(s)	311, 433
BmiI	GGNNCC	2 cut(s)	467, 614
BmrFI	CCNGG	2 cut(s)	312, 313
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	580
Bpu1102I	GCTNAGC	1 cut(s)	365
BpuMI	CCSGG	2 cut(s)	312, 313
Bsa29I	ATCGAT	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	311, 312, 461
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	5 cut(s)	442, 472, 596, 626, 651
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	333, 618
BseCI	ATCGAT	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	311, 312, 461
BseGI	GGATG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	356, 618
BseNI	ACTGG	2 cut(s)	333, 618
BseRI	GAGGAG	1 cut(s)	675
BseYI	CCCAGC	2 cut(s)	144, 439
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	416, 673
BshNI	GGYRCC	1 cut(s)	465
BshTI	ACCGGT	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	2 cut(s)	311, 433
BsiSI	CCGG	3 cut(s)	312, 380, 417
BslFI	GGGAC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	416, 673
BsoBI	CYCGRG	2 cut(s)	311, 433
Bsp1286I	GDGCHC	2 cut(s)	13, 171
Bsp1407I	TGTACA	1 cut(s)	248
Bsp143I	GATC	4 cut(s)	4, 36, 124, 637
Bsp1720I	GCTNAGC	1 cut(s)	365
BspANI	GGCC	2 cut(s)	416, 673
BspCNI	CTCAG	2 cut(s)	357, 619
BspDI	ATCGAT	1 cut(s)	35
BspLI	GGNNCC	2 cut(s)	467, 614
BspPI	GGATC	3 cut(s)	12, 119, 645
BspT107I	GGYRCC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	379
BsrGI	TGTACA	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	333, 618
BssAI	RCCGGY	1 cut(s)	379
BssECI	CCNNGG	3 cut(s)	311, 312, 461
BssMI	GATC	4 cut(s)	4, 36, 124, 637
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	248
BstC8I	GCNNGC	4 cut(s)	217, 362, 480, 505
BstDEI	CTNAG	3 cut(s)	365, 627, 675
BstF5I	GGATG	1 cut(s)	528
BstKTI	GATC	4 cut(s)	7, 39, 127, 640
BstMBI	GATC	4 cut(s)	4, 36, 124, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 225, 366, 604
BstNSI	RCATGY	2 cut(s)	295, 428
BstSCI	CCNGG	2 cut(s)	310, 311
BstV2I	GAAGAC	1 cut(s)	580
BstX2I	RGATCY	1 cut(s)	637
BstXI	CCANNNNNNTGG	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	416, 673
BsuTUI	ATCGAT	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	51, 625
Cac8I	GCNNGC	4 cut(s)	217, 362, 480, 505
CaiI	CAGNNNCTG	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	379
Cfr9I	CCCGGG	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	35
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	249, 466
CspAI	ACCGGT	1 cut(s)	379
CviAII	CATG	2 cut(s)	292, 425
CviQI	GTAC	2 cut(s)	249, 466
DdeI	CTNAG	3 cut(s)	365, 627, 675
DpnI	GATC	4 cut(s)	6, 38, 126, 639
DpnII	GATC	4 cut(s)	4, 36, 124, 637
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	461
Eco24I	GRGCYC	2 cut(s)	13, 171
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	620
Eco88I	CYCGRG	2 cut(s)	311, 433
EcoICRI	GAGCTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	461
EcoT38I	GRGCYC	2 cut(s)	13, 171
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	2 cut(s)	295, 428
FaiI	YATR	4 cut(s)	293, 410, 426, 500
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	2 cut(s)	291, 424
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	2 cut(s)	13, 171
FspBI	CTAG	1 cut(s)	149
GsaI	CCCAGC	2 cut(s)	148, 443
HaeIII	GGCC	2 cut(s)	416, 673
HapII	CCGG	3 cut(s)	312, 380, 417
HgaI	GACGC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	295, 428
HindIII	AAGCTT	2 cut(s)	155, 653
HinfI	GANTC	1 cut(s)	396
HpaII	CCGG	3 cut(s)	312, 380, 417
HphI	GGTGA	2 cut(s)	122, 590
Hpy188I	TCNGA	1 cut(s)	647
Hpy188III	TCNNGA	3 cut(s)	113, 403, 433
Hpy99I	CGWCG	1 cut(s)	647
HpyAV	CCTTC	3 cut(s)	359, 547, 595
HpyCH4V	TGCA	3 cut(s)	51, 275, 478
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 225, 366, 604
HpyF3I	CTNAG	3 cut(s)	365, 627, 675
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	2 cut(s)	295, 428
KpnI	GGTACC	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	4, 36, 124, 637
LmnI	GCTCC	3 cut(s)	212, 554, 604
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	4 cut(s)	6, 38, 126, 639
MboI	GATC	4 cut(s)	4, 36, 124, 637
MboII	GAAGA	3 cut(s)	31, 101, 580
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	2 cut(s)	13, 171
MluCI	AATT	2 cut(s)	176, 581
MmeI	TCCRAC	1 cut(s)	625
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	63
MspI	CCGG	3 cut(s)	312, 380, 417
MspR9I	CCNGG	2 cut(s)	312, 313
MwoI	GCNNNNNNNGC	4 cut(s)	154, 225, 366, 604
NciI	CCSGG	2 cut(s)	312, 313
NdeII	GATC	4 cut(s)	4, 36, 124, 637
NlaIII	CATG	2 cut(s)	295, 428
NlaIV	GGNNCC	2 cut(s)	467, 614
NspI	RCATGY	2 cut(s)	295, 428
PaeR7I	CTCGAG	1 cut(s)	433
PciI	ACATGT	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	396
PinAI	ACCGGT	1 cut(s)	379
PscI	ACATGT	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	13
PspFI	CCCAGC	2 cut(s)	144, 439
PspN4I	GGNNCC	2 cut(s)	467, 614
PsrI	GAACNNNNNNTAC	2 cut(s)	241, 273
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	2 cut(s)	250, 467
RsaNI	GTAC	2 cut(s)	249, 466
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	4, 36, 124, 637
ScrFI	CCNGG	2 cut(s)	312, 313
SduI	GDGCHC	2 cut(s)	13, 171
SfaNI	GCATC	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	433
SmaI	CCCGGG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	2 cut(s)	176, 581
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	310, 311
StyI	CCWWGG	1 cut(s)	461
TaqI	TCGA	4 cut(s)	7, 35, 318, 434
TasI	AATT	2 cut(s)	176, 581
TatI	WGTACW	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	58, 625
TspDTI	ATGAA	1 cut(s)	517
TspMI	CCCGGG	1 cut(s)	311
TspRI	CASTG	2 cut(s)	58, 625
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	2 cut(s)	295, 428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	433
XmaI	CCCGGG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.