Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003155

Physical Location & Seq

Genomic Coordinates Reverse (-)

4609904 .. 4611117

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACCGAGCACAGCTTGTTCTGCTAGGGCTACCACTCTTCCTCTTCTGCACCGACCTCCTAAACCTCTTTACTCCGCCCCCACCTCCGCCCCACAAGCCTCCTCACCACCACCATCCCCACCTCCAACACCAGCCTCCTCCAGTCGCCAAAGAAACCTTAGACTTACCCTCACAGAAACCAAGCGGTTTTGGGGCAATCGGCGTCGGCAGCACGGTCAAAATTAGCTTCTGCACTTCTTGCTCTTACAAGGGGAATGCAGTAACAATGACGAAGATGTTGGAGGCCGCTTTTCCTGGAATCCATGTTGATCTTTCGAACTATCCTCCGCCCCTTCCAAAGCGTGTGGTCAGCAAGCTGGTTCCGGTTGCTCAAGTTGTAGTTTTTGGGATTGTAATGGCAGGCGAGCATATTTTTCCGATGTTGGGGTTTGCAACACCTCCTGCTTGGTATTATTCTCTGCGTGCAAATAGATTTGGTACCATTGCATCCACTTTGCTTCTTGGCAATGCATTGCAGTCCTTCCTCCAAGGCACTGGTGCTTTCGAAGTTTACCTCAACGATGAATTGGTTTTCTCTAAGCTGAAGGAGGGAAGATTTCCGGGTGAGCTTGAACTAAGAGATGCCATTGCGAGTAAGTTGGGTAGTTCAAAAATCACAGACTCAGCGTTAAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rdx

Protein Analysis

227

Amino Acids

24.52

Weight (kDa)

8.99

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47300 AT5G58640 AT5G58640
fragaria_vesca	FvH4_3g38810 FvH4_6g11300
malus_domestica	MD03G1067200.v1.1 MD04G1155500.v1.1 MD11G1071900.v1.1 MD12G1168700.v1.1
prunus_persica	Prupe.6G055700_v2.0.a1 Prupe.6G279000_v2.0.a1
pyrus_communis	pycom11g06000 pycom12g16020
rosa_chinensis	RchiOBHm_Chr3g0462841 RchiOBHm_Chr5g0070001
rosa_laevigata	RLG00000024828 RLG00000036112
rosa_multiflora	Rmu_sc0000766.1_g000012 Rmu_sc0002367.1_g000004 Rmu_sc0030656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011060 Rroxscaffold_6G00417160
rosa_rugosa	Rorug03G0059600 Rorug03G0059600 Rorug05G0402000 Rorug05G0402100
rosa_samantha	Rh3AG117700 Rh3BG121500 Rh3CG124400 Rh3DG123100 Rh5AG458500 Rh5BG477200 Rh5CG500900 Rh5DG489200
rosa_wichuraiana	Rw3G009980 Rw5G001670 Rw5G042800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	479
AciI	CCGC	5 cut(s)	77, 89, 186, 288, 329
AcuI	CTGAAG	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	614, 651
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	5 cut(s)	16, 228, 358, 583, 610
AluI	AGCT	5 cut(s)	16, 228, 358, 583, 610
Alw21I	GWGCWC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	210
Asp718I	GGTACC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	603
AsuHPI	GGTGA	2 cut(s)	98, 617
AsuII	TTCGAA	2 cut(s)	317, 546
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	603
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	211, 288
BlsI	GCNGC	2 cut(s)	212, 289
Bme1390I	CCNGG	2 cut(s)	297, 603
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	363, 481
BmrFI	CCNGG	2 cut(s)	297, 603
BmsI	GCATC	2 cut(s)	497, 613
BpmI	CTGGAG	1 cut(s)	126
Bpu14I	TTCGAA	2 cut(s)	317, 546
BpuEI	CTTGAG	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	603
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	529
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	143, 541
Bse3DI	GCAATG	4 cut(s)	483, 512, 514, 627
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	2 cut(s)	115, 488
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	4 cut(s)	483, 512, 514, 627
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	143, 541
BseRI	GAGGAG	2 cut(s)	93, 129
BseXI	GCAGC	1 cut(s)	222
BsgI	GTGCAG	2 cut(s)	34, 217
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	365, 602
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	287
Bsp119I	TTCGAA	2 cut(s)	317, 546
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	5 cut(s)	77, 89, 186, 288, 329
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	677
BspLI	GGNNCC	2 cut(s)	363, 481
BspT104I	TTCGAA	2 cut(s)	317, 546
BspT107I	GGYRCC	1 cut(s)	479
BsrDI	GCAATG	4 cut(s)	483, 512, 514, 627
BsrI	ACTGG	2 cut(s)	143, 541
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	44, 50
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstBI	TTCGAA	2 cut(s)	317, 546
BstC8I	GCNNGC	4 cut(s)	356, 403, 407, 465
BstDEI	CTNAG	5 cut(s)	160, 579, 617, 664, 678
BstF5I	GGATG	2 cut(s)	115, 488
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 97, 210, 240
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	295, 601
BstV1I	GCAGC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	115, 488
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	4 cut(s)	356, 403, 407, 465
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	480
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	9 cut(s)	16, 31, 100, 136, 228, 287, 358, 583, 610
CviKI_1	RGCY	9 cut(s)	16, 31, 100, 136, 228, 287, 358, 583, 610
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	5 cut(s)	160, 579, 617, 664, 678
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	44, 50
EarI	CTCTTC	2 cut(s)	44, 50
EciI	GGCGGA	3 cut(s)	66, 78, 318
Eco130I	CCWWGG	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	1 cut(s)	308
FaiI	YATR	2 cut(s)	306, 411
FatI	CATG	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	211, 288
FokI	GGATG	2 cut(s)	102, 475
Fsp4HI	GCNGC	2 cut(s)	211, 288
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	2 cut(s)	211, 288
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	2 cut(s)	365, 602
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	2 cut(s)	300, 662
HpaII	CCGG	2 cut(s)	365, 602
HphI	GGTGA	2 cut(s)	98, 617
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	1 cut(s)	420
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	344, 532, 580
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	8 cut(s)	51, 234, 260, 434, 467, 488, 512, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 97, 210, 240
HpyF3I	CTNAG	5 cut(s)	160, 579, 617, 664, 678
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	308
KpnI	GGTACC	1 cut(s)	483
Kzo9I	GATC	1 cut(s)	310
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	2 cut(s)	497, 613
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	4 cut(s)	31, 37, 286, 606
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	2 cut(s)	222, 566
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	2 cut(s)	151, 261
Mph1103I	ATGCAT	1 cut(s)	514
MseI	TTAA	1 cut(s)	671
MspI	CCGG	2 cut(s)	365, 602
MspR9I	CCNGG	2 cut(s)	297, 603
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	22, 97, 210, 240
NciI	CCSGG	1 cut(s)	603
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	2 cut(s)	363, 481
NsiI	ATGCAT	1 cut(s)	514
NspV	TTCGAA	2 cut(s)	317, 546
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	300
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	212, 289
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	363, 481
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	671
SatI	GCNGC	2 cut(s)	211, 288
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	2 cut(s)	297, 603
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	497, 613
SfuI	TTCGAA	2 cut(s)	317, 546
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	2 cut(s)	222, 566
SsiI	CCGC	5 cut(s)	77, 89, 186, 288, 329
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	295, 601
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	317, 546
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	222, 566
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	671
Tru9I	TTAA	1 cut(s)	671
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	579
TspRI	CASTG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.