Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Reverse (-)

17659680 .. 17661354

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGCAATACAAAACACATCCACAAAGGGTTACAGGAGAGGCTTTTAGATCTTCTCTTGATCGCTCTTATAGTTTACATGACTCTTAAAGGCGGCACGAGTGGGGCTTGTGCCGCGTGCAAGTACCAACGTAGACGCTGCGCCGCGGACTGCCCCCTCGCGCCTTACTTCCCAGCCGAACAACCGAAACTTTTCCAAAACGTTCACAGGCTATTCGGCGTAAGAAGTATCGTCAAGATCCTCGAAAAACTAGACGAAACTCAGAAACCAGAAGCAATGAAATCAATCATCTTCCAGTCTTATGTCCGTGACCGTTCTCCTGTCCACGGTTGCCTCGGCGTCACGCAACAACTTCAATACATGATCTGGTTTGCTGAAGAAGAACTCAAAGCTGTCAATTCTCAATTACAACTATATCGCTCTCAACCACAAAACGGTCAAAATCAAAACCAAAACCATAATCATAATCAGATGATTCATGAGCTTGGTAGTGATCATAATAAGCAGCAAGAAGATGTTACATCGCAGCAGCTTGACTTGGGTATGGGACTTAACGTTAACAATAATCAGAGCAATGTCGTTACACCATTCTTTAGTTCATTATTACCAGTTTCCGAAACACAACAGCCACAAATGTCTTACACTTATAGCTGCAGTGAGGTTAACAACAATGGCTATAGTCCTCCTGCTTATAATACAGATTCGGGCAAGGAGATTCTGACCAACAATAACAATGTTTGGGGTGATCAGAATCGATTTCTGTATAACAACAACAATGGAGGAGGATACAGCAACCAAAACGAGAGCTGTCATGAGATGAAGAGTAACGGTGTAATGGCAATACAATCACAGCTCGTAAATCTGCAAATGGTATCAAATCATCAGCGAGTGGAAGAAGAAGAAGCTGATCATGAATACGATGAACTCCATCAGTTTCTTGATATCATTGACGATAGGCAATCATTTGGGGATTCTAAAGAAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

328

Amino Acids

37.33

Weight (kDa)

5.53

Isoelectric Point (pI)

64.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	36 - 133	8.6e-34	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AccI	GTMKAC	1 cut(s)	133
AccII	CGCG	3 cut(s)	116, 146, 161
AciI	CCGC	4 cut(s)	93, 114, 144, 146
AclI	AACGTT	2 cut(s)	201, 555
AclWI	GGATC	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	326, 434
AgsI	TTSAA	1 cut(s)	356
AluBI	AGCT	7 cut(s)	392, 484, 532, 651, 807, 853, 905
AluI	AGCT	7 cut(s)	392, 484, 532, 651, 807, 853, 905
AlwI	GGATC	1 cut(s)	232
ApeKI	GCWGC	5 cut(s)	138, 505, 526, 529, 651
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	2 cut(s)	143, 163
AsuHPI	GGTGA	1 cut(s)	755
BauI	CACGAG	1 cut(s)	97
BbvI	GCAGC	5 cut(s)	125, 517, 538, 541, 638
BccI	CCATC	1 cut(s)	936
BciVI	GTATCC	1 cut(s)	779
BclI	TGATCA	3 cut(s)	493, 745, 907
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	2 cut(s)	652, 676
BfuI	GTATCC	1 cut(s)	779
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	8 cut(s)	94, 114, 139, 144, 506, 527, 530, 652
BlsI	GCNGC	8 cut(s)	95, 115, 140, 145, 507, 528, 531, 653
Bsa29I	ATCGAT	1 cut(s)	754
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	3 cut(s)	144, 325, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 434
Bse1I	ACTGG	2 cut(s)	295, 608
Bse3DI	GCAATG	2 cut(s)	282, 580
Bse8I	GATNNNNATC	1 cut(s)	750
BseCI	ATCGAT	1 cut(s)	754
BseDI	CCNNGG	3 cut(s)	144, 325, 334
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	2 cut(s)	326, 434
BseMI	GCAATG	2 cut(s)	282, 580
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	295, 608
BseRI	GAGGAG	1 cut(s)	795
BseXI	GCAGC	5 cut(s)	125, 517, 538, 541, 638
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	3 cut(s)	116, 146, 161
BshVI	ATCGAT	1 cut(s)	754
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	2 cut(s)	326, 434
BsmFI	GGGAC	1 cut(s)	561
Bsp143I	GATC	7 cut(s)	49, 60, 237, 363, 493, 745, 907
BspACI	CCGC	4 cut(s)	93, 114, 144, 146
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	754
BspFNI	CGCG	3 cut(s)	116, 146, 161
BspHI	TCATGA	3 cut(s)	478, 811, 910
BspMAI	CTGCAG	1 cut(s)	656
BspPI	GGATC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	282, 580
BsrI	ACTGG	2 cut(s)	295, 608
BssECI	CCNNGG	3 cut(s)	144, 325, 334
BssMI	GATC	7 cut(s)	49, 60, 237, 363, 493, 745, 907
BssNI	GRCGYC	1 cut(s)	339
BssSI	CACGAG	1 cut(s)	97
Bst2BI	CACGAG	1 cut(s)	97
Bst4CI	ACNGT	4 cut(s)	314, 329, 437, 830
Bst6I	CTCTTC	1 cut(s)	815
BstACI	GRCGYC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	2 cut(s)	144, 325
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	3 cut(s)	116, 146, 161
BstHHI	GCGC	2 cut(s)	143, 163
BstKTI	GATC	7 cut(s)	52, 63, 240, 366, 496, 748, 910
BstMBI	GATC	7 cut(s)	49, 60, 237, 363, 493, 745, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSFI	CTRYAG	2 cut(s)	652, 676
BstUI	CGCG	3 cut(s)	116, 146, 161
BstV1I	GCAGC	5 cut(s)	125, 517, 538, 541, 638
BstX2I	RGATCY	2 cut(s)	49, 237
BstYI	RGATCY	2 cut(s)	49, 237
Bsu15I	ATCGAT	1 cut(s)	754
BsuI	GTATCC	1 cut(s)	779
BsuTUI	ATCGAT	1 cut(s)	754
BtgI	CCRYGG	2 cut(s)	144, 325
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	118
CciI	TCATGA	3 cut(s)	478, 811, 910
CfoI	GCGC	2 cut(s)	143, 163
Cfr42I	CCGCGG	1 cut(s)	147
ClaI	ATCGAT	1 cut(s)	754
CseI	GACGC	2 cut(s)	144, 328
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	5 cut(s)	79, 361, 479, 812, 911
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	7 cut(s)	51, 62, 239, 365, 495, 747, 909
DpnII	GATC	7 cut(s)	49, 60, 237, 363, 493, 745, 907
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
Eco32I	GATATC	1 cut(s)	943
Eco57I	CTGAAG	1 cut(s)	396
EcoRV	GATATC	1 cut(s)	943
FaeI	CATG	5 cut(s)	82, 364, 482, 815, 914
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	5 cut(s)	78, 360, 478, 811, 910
FbaI	TGATCA	3 cut(s)	493, 745, 907
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	8 cut(s)	94, 114, 139, 144, 506, 527, 530, 652
FokI	GGATG	1 cut(s)	5
Fsp4HI	GCNGC	8 cut(s)	94, 114, 139, 144, 506, 527, 530, 652
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	142, 162
GluI	GCNGC	8 cut(s)	94, 114, 139, 144, 506, 527, 530, 652
GsaI	CCCAGC	1 cut(s)	176
HgaI	GACGC	2 cut(s)	144, 328
HhaI	GCGC	2 cut(s)	143, 163
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	82, 364, 482, 815, 914
Hin6I	GCGC	2 cut(s)	141, 161
HinP1I	GCGC	2 cut(s)	141, 161
HincII	GTYRAC	2 cut(s)	559, 664
HindII	GTYRAC	2 cut(s)	559, 664
HinfI	GANTC	6 cut(s)	82, 475, 701, 715, 751, 971
HpaI	GTTAAC	2 cut(s)	559, 664
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	6 cut(s)	76, 134, 205, 325, 559, 664
Hpy188I	TCNGA	6 cut(s)	264, 471, 570, 616, 720, 750
Hpy188III	TCNNGA	6 cut(s)	58, 235, 479, 812, 911, 938
Hpy8I	GTNNAC	6 cut(s)	76, 134, 205, 325, 559, 664
HpyCH4III	ACNGT	4 cut(s)	314, 329, 437, 830
HpyCH4IV	ACGT	3 cut(s)	130, 201, 555
HpyCH4V	TGCA	3 cut(s)	120, 654, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	3 cut(s)	130, 201, 555
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	5 cut(s)	82, 364, 482, 815, 914
HspAI	GCGC	2 cut(s)	141, 161
Ksp22I	TGATCA	3 cut(s)	493, 745, 907
KspAI	GTTAAC	2 cut(s)	559, 664
KspI	CCGCGG	1 cut(s)	147
Kzo9I	GATC	7 cut(s)	49, 60, 237, 363, 493, 745, 907
LpnPI	CCDG	9 cut(s)	20, 186, 193, 282, 308, 333, 352, 621, 699
Lsp1109I	GCAGC	5 cut(s)	125, 517, 538, 541, 638
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	3 cut(s)	130, 201, 555
MaeIII	GTNAC	6 cut(s)	30, 308, 340, 517, 580, 824
MalI	GATC	7 cut(s)	51, 62, 239, 365, 495, 747, 909
MboI	GATC	7 cut(s)	49, 60, 237, 363, 493, 745, 907
MboII	GAAGA	9 cut(s)	44, 283, 389, 392, 524, 832, 905, 908, 911
MflI	RGATCY	2 cut(s)	49, 237
MluCI	AATT	2 cut(s)	397, 404
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	8 cut(s)	33, 167, 251, 344, 652, 693, 773, 776
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	4 cut(s)	87, 552, 558, 663
MspA1I	CMGCKG	1 cut(s)	146
MvnI	CGCG	3 cut(s)	116, 146, 161
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	7 cut(s)	49, 60, 237, 363, 493, 745, 907
NlaIII	CATG	5 cut(s)	82, 364, 482, 815, 914
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	308, 340
PagI	TCATGA	3 cut(s)	478, 811, 910
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	5 cut(s)	475, 701, 715, 751, 971
PkrI	GCNGC	8 cut(s)	95, 115, 140, 145, 507, 528, 531, 653
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PsiI	TTATAA	1 cut(s)	693
Psp1406I	AACGTT	2 cut(s)	201, 555
PspFI	CCCAGC	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	656
PsuI	RGATCY	2 cut(s)	49, 237
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SacII	CCGCGG	1 cut(s)	147
SaqAI	TTAA	4 cut(s)	87, 552, 558, 663
SatI	GCNGC	8 cut(s)	94, 114, 139, 144, 506, 527, 530, 652
Sau3AI	GATC	7 cut(s)	49, 60, 237, 363, 493, 745, 907
SchI	GAGTC	1 cut(s)	76
SfcI	CTRYAG	2 cut(s)	652, 676
Sfr303I	CCGCGG	1 cut(s)	147
SgrBI	CCGCGG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	397, 404
SsiI	CCGC	4 cut(s)	93, 114, 144, 146
SspMI	CTAG	1 cut(s)	251
TaaI	ACNGT	4 cut(s)	314, 329, 437, 830
TaiI	ACGT	3 cut(s)	133, 204, 558
TaqI	TCGA	2 cut(s)	243, 754
TasI	AATT	2 cut(s)	397, 404
TauI	GCSGC	3 cut(s)	96, 116, 146
TfiI	GAWTC	5 cut(s)	475, 701, 715, 751, 971
Tru1I	TTAA	4 cut(s)	87, 552, 558, 663
Tru9I	TTAA	4 cut(s)	87, 552, 558, 663
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	2 cut(s)	308, 340
TseI	GCWGC	5 cut(s)	138, 505, 526, 529, 651
Tsp45I	GTSAC	2 cut(s)	308, 340
TspDTI	ATGAA	6 cut(s)	293, 467, 588, 833, 927, 936
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.