Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Reverse (-)

15326615 .. 15328494

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G184500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTCTCCCATATTGCTTCCAACAATCTCCTCCTTCACCTTCTTCTTCTTCTTCCTCCTCCTCCTCATTCTTGTTCAACTCATCGCCACTCTTCTTCTTCTTCTCAAACGCAGCTCCAATTGCTTTCTGGGTTTTTCCTTCTCTCGTCTGCCACTTTGGTTCCAATCCTTGTTTTCTCCAAACATGACCCTTAAGGGTGCCACTAACTCGGCCTGCGCTGCGTGCAAATACCAAAGAAGAAAGTGCACCCCCGAGTGCCCTTTGGCCCCTTTTTTCCCAGCAGACCAACCCAAAATGTTCCAAAACGCGCACAAGCTATTTGGAGTTAGCAACATCGTGAAAATACTTAAAAACTTGGAGCCTGAAATGAAGTTTGAGGCCATGAGGTCCATAATTTACCAGGCCAATATTCGTGACAAGTTTCCGGTTTACGGCTGTTGGGAGGTGATTTGGCAACTACAATACCAACTTCTGCTGGCAGAGGAAGAGCTTCAAGCTGTTCAAGCCCAGCTTGCAATGTACAGGCAACATCACCACCACCAGCATCAGATTTCATCTGTGCCTGAATATGTAACCTCACAATTAGAACTGGGCATGGCTCCACCTAATAATTCCCTCCCTCTTTTCAATCACAACCCACAGCCTTACAATAATAATAACAATAATGCCATGCCTGCTTTGCCTGTAACACAACACCACCATCAACAGCAGTCTTACTCTAACAGCAGTGATGCTGCTTATAGCTCTGTTTATATTGACTCTAAGGATAACAATGCGGCAAATCCTTTGTGGGTCTCAAATCCTTGTACCACTAACAACAACAGCAACAATGACAATTCAGAGACAATTCAATCCCAACTGGGAGTTCTTCAGCCACTCTCTCTCCAACCAGATGTTGTTCAAGATTATGATGAGCTGCATCCCTTTTTCGACACCATCGACGACAGACAGTCCTACATTGATTCCAAAGAGGCTTACGAGTCAAGCTCCGAAGAATCATTTAAGGACACGACACAATCGATGGAGTATGCGGAGAACGCATTGAAGAATGCTGCATCATGCTTTAGTCTTACCAGCGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

362

Amino Acids

41.07

Weight (kDa)

5.52

Isoelectric Point (pI)

65.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	1 cut(s)	308
AciI	CCGC	2 cut(s)	776, 1031
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	2 cut(s)	521, 808
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	7 cut(s)	77, 494, 503, 628, 851, 902, 1045
AhdI	GACNNNNNGTC	1 cut(s)	949
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	849, 881
AluBI	AGCT	8 cut(s)	114, 316, 490, 497, 511, 744, 916, 987
AluI	AGCT	8 cut(s)	114, 316, 490, 497, 511, 744, 916, 987
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	3 cut(s)	9, 799, 836
Alw44I	GTGCAC	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	210, 264, 378, 402
ApaLI	GTGCAC	1 cut(s)	244
ApeKI	GCWGC	5 cut(s)	111, 218, 734, 916, 1052
Asp700I	GAANNNNTTC	1 cut(s)	489
AspLEI	GCGC	2 cut(s)	218, 310
AspS9I	GGNCC	2 cut(s)	265, 387
AsuHPI	GGTGA	3 cut(s)	28, 457, 524
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	387
BaeGI	GKGCMC	2 cut(s)	248, 260
BanI	GGYRCC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	5 cut(s)	123, 205, 721, 903, 1039
BccI	CCATC	3 cut(s)	708, 944, 1015
BceAI	ACGGC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	3 cut(s)	9, 799, 836
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	6 cut(s)	112, 219, 735, 777, 917, 1053
BlsI	GCNGC	6 cut(s)	113, 220, 736, 778, 918, 1054
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	387
BmeRI	GACNNNNNGTC	1 cut(s)	949
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	265, 387
BmiI	GGNNCC	5 cut(s)	161, 199, 267, 360, 600
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	2 cut(s)	599, 869
BmsI	GCATC	4 cut(s)	553, 721, 928, 1064
BmuI	ACTGGG	2 cut(s)	599, 869
BplI	GAGNNNNNCTC	2 cut(s)	971, 1003
Bsa29I	ATCGAT	1 cut(s)	1019
BsaI	GGTCTC	1 cut(s)	799
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	594, 864
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	1019
BseGI	GGATG	1 cut(s)	919
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	522
BseNI	ACTGG	2 cut(s)	594, 864
BseRI	GAGGAG	4 cut(s)	19, 47, 50, 53
BseSI	GKGCMC	2 cut(s)	248, 260
BseXI	GCAGC	5 cut(s)	123, 205, 721, 903, 1039
BseYI	CCCAGC	2 cut(s)	277, 507
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	4 cut(s)	212, 266, 380, 404
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	1019
BsiHKAI	GWGCWC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	3 cut(s)	9, 799, 836
BsmI	GAATGC	1 cut(s)	1054
BsnI	GGCC	4 cut(s)	212, 266, 380, 404
Bso31I	GGTCTC	1 cut(s)	799
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	248, 260
Bsp1407I	TGTACA	1 cut(s)	519
BspACI	CCGC	2 cut(s)	776, 1031
BspANI	GGCC	4 cut(s)	212, 266, 380, 404
BspDI	ATCGAT	1 cut(s)	1019
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	5 cut(s)	161, 199, 267, 360, 600
BspQI	GCTCTTC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	522
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	594, 864
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	951
Bst6I	CTCTTC	2 cut(s)	96, 480
BstAFI	CTTAAG	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	519
BstC8I	GCNNGC	5 cut(s)	214, 223, 477, 513, 675
BstDEI	CTNAG	1 cut(s)	762
BstF5I	GGATG	1 cut(s)	919
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	2 cut(s)	218, 310
BstMAI	GTCTC	3 cut(s)	9, 799, 836
BstMWI	GCNNNNNNNGC	8 cut(s)	120, 218, 222, 503, 512, 674, 679, 1037
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstSLI	GKGCMC	2 cut(s)	248, 260
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	5 cut(s)	123, 205, 721, 903, 1039
Bsu15I	ATCGAT	1 cut(s)	1019
BsuRI	GGCC	4 cut(s)	212, 266, 380, 404
BsuTUI	ATCGAT	1 cut(s)	1019
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	919
BtsI	GCAGTG	1 cut(s)	733
BtsIMutI	CAGTG	1 cut(s)	733
Cac8I	GCNNGC	5 cut(s)	214, 223, 477, 513, 675
CfoI	GCGC	2 cut(s)	218, 310
Cfr13I	GGNCC	2 cut(s)	265, 387
ClaI	ATCGAT	1 cut(s)	1019
CseI	GACGC	1 cut(s)	1066
Csp6I	GTAC	2 cut(s)	520, 807
CviAII	CATG	5 cut(s)	184, 382, 595, 670, 1059
CviQI	GTAC	2 cut(s)	520, 807
DdeI	CTNAG	1 cut(s)	762
DriI	GACNNNNNGTC	1 cut(s)	949
Eam1104I	CTCTTC	2 cut(s)	96, 480
Eam1105I	GACNNNNNGTC	1 cut(s)	949
EarI	CTCTTC	2 cut(s)	96, 480
Eco31I	GGTCTC	1 cut(s)	799
Eco47I	GGWCC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	399
FaeI	CATG	5 cut(s)	187, 385, 598, 673, 1062
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	5 cut(s)	183, 381, 594, 669, 1058
Fnu4HI	GCNGC	6 cut(s)	112, 219, 735, 777, 917, 1053
FokI	GGATG	1 cut(s)	906
Fsp4HI	GCNGC	6 cut(s)	112, 219, 735, 777, 917, 1053
GlaI	GCGC	2 cut(s)	217, 309
GluI	GCNGC	6 cut(s)	112, 219, 735, 777, 917, 1053
GsaI	CCCAGC	2 cut(s)	281, 511
HaeIII	GGCC	4 cut(s)	212, 266, 380, 404
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	1 cut(s)	1066
HhaI	GCGC	2 cut(s)	218, 310
Hin1II	CATG	5 cut(s)	187, 385, 598, 673, 1062
Hin6I	GCGC	2 cut(s)	216, 308
HinP1I	GCGC	2 cut(s)	216, 308
HincII	GTYRAC	1 cut(s)	1081
HindII	GTYRAC	1 cut(s)	1081
HinfI	GANTC	4 cut(s)	758, 962, 980, 995
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	3 cut(s)	28, 457, 524
Hpy166II	GTNNAC	3 cut(s)	246, 430, 1081
Hpy188I	TCNGA	3 cut(s)	549, 841, 991
Hpy188III	TCNNGA	3 cut(s)	337, 413, 902
Hpy8I	GTNNAC	3 cut(s)	246, 430, 1081
Hpy99I	CGWCG	1 cut(s)	944
HpyAV	CCTTC	3 cut(s)	43, 49, 148
HpyCH4III	ACNGT	1 cut(s)	951
HpyCH4V	TGCA	5 cut(s)	225, 246, 515, 919, 1055
HpyF10VI	GCNNNNNNNGC	8 cut(s)	120, 218, 222, 503, 512, 674, 679, 1037
HpyF3I	CTNAG	1 cut(s)	762
Hsp92II	CATG	5 cut(s)	187, 385, 598, 673, 1062
HspAI	GCGC	2 cut(s)	216, 308
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	4 cut(s)	119, 358, 604, 992
Lsp1109I	GCAGC	5 cut(s)	123, 205, 721, 903, 1039
LweI	GCATC	4 cut(s)	553, 721, 928, 1064
MaeIII	GTNAC	3 cut(s)	413, 571, 685
MfeI	CAATTG	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	248, 260
MluCI	AATT	6 cut(s)	118, 393, 581, 610, 835, 846
MlyI	GAGTC	2 cut(s)	752, 989
MmeI	TCCRAC	2 cut(s)	44, 910
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	3 cut(s)	192, 348, 1002
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	1054
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	8 cut(s)	120, 218, 222, 503, 512, 674, 679, 1037
NlaIII	CATG	5 cut(s)	187, 385, 598, 673, 1062
NlaIV	GGNNCC	5 cut(s)	161, 199, 267, 360, 600
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	2 cut(s)	936, 1016
PctI	GAATGC	1 cut(s)	1054
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	962, 995
PkrI	GCNGC	6 cut(s)	113, 220, 736, 778, 918, 1054
PleI	GAGTC	2 cut(s)	752, 988
PpsI	GAGTC	2 cut(s)	752, 988
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	2 cut(s)	277, 507
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	5 cut(s)	161, 199, 267, 360, 600
PspPI	GGNCC	2 cut(s)	265, 387
RsaI	GTAC	2 cut(s)	521, 808
RsaNI	GTAC	2 cut(s)	520, 807
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	192, 348, 1002
SatI	GCNGC	6 cut(s)	112, 219, 735, 777, 917, 1053
Sau96I	GGNCC	2 cut(s)	265, 387
SchI	GAGTC	2 cut(s)	752, 989
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	248, 260
SfaNI	GCATC	4 cut(s)	553, 721, 928, 1064
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	6 cut(s)	118, 393, 581, 610, 835, 846
SsiI	CCGC	2 cut(s)	776, 1031
SspI	AATATT	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	951
TaqI	TCGA	3 cut(s)	930, 939, 1019
TasI	AATT	6 cut(s)	118, 393, 581, 610, 835, 846
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	1 cut(s)	779
TfiI	GAWTC	2 cut(s)	962, 995
Tru1I	TTAA	3 cut(s)	192, 348, 1002
Tru9I	TTAA	3 cut(s)	192, 348, 1002
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	5 cut(s)	111, 218, 734, 916, 1052
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	383, 543
TspRI	CASTG	1 cut(s)	733
Vha464I	CTTAAG	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.