Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Forward (+)

8921123 .. 8922350

Gene Structure 1228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

TTCTTCCTCATTCTCCTCCTCCATCATTACCGCCACCTTTGCATTCATCTCTCCAATTCATTTCCTCTAAGCTTTAACCGGCTACATTTGCCACATTGGTCTGAACCACCACCGCAACCAAGCCGACGAGACTTGCTTGGGAACCAAGACATAATGACCCTTAAGGGTGCCACCAGCCAGGCCTGTGCTGCATGCAAATACCAAAGAAGAAAGTGCACGCCTGAGTGCCCTTTAGCTCCTTATTTCCCAGCAGACCAACCAAAAATGTTTCAAAATGCACACAAGCTTTTCGGGGTCTGCAACATCTTGAAGATACTTAAAACTGTCGACCCTTGTTTCAAGTTTGAGACCATGAAATCCATCATATGCCAAGCCAATATCCGAGAAAAGTTTCCGGTCTACGGCTGTTGGGAGGTTATCTGGCAATTGCAGTACCAGATTATGGCTGCGGAGCAGGAGCTTCAAAATGTTCATAAACAGCTTGCATTGTACAGACAACATCACTACCACCAGCAGCAGCAGATTTCAGCTATGCCAGATTATGTGACCTCACAATTGGAATTAGGCATGGCACCACCTAACAATAACAATACCATCTCATTTTTAAATCATAGTACTCCACAATCTTACGATAACAACAATAATGCCATACATCATGCTTTGCCTGTAACACAACAACAGCAGCAGCATTACTCTAATCGAAGCGACGATGCTTACACTTCTGCTTATGACATTGACTCCAAGCAGACTATTACCACGGACAATGTTTTATGGGCGCAAAATCCTTTCACCAACAACAGCATCAATGAGAACAATGATAACGCAGAAACAGTTCAATCCCAGTTTGGTGTTTCGCAGACACTAGCCATGGGATCAGAAGATGTTCAAGATTATGATGAGCTGCACCCATTTTTTGATACCATAGATGATAGACAGTCATACATTGATTCCAAAGAGGCTTATGACTCAAGCAGTTCGGAAGAATCGCTCAAGGACACAACACAAATATCAATGGATCATGCGGCGGATGATAACACATTGAAGAGTGCTGCAGCATGCTTCAGTCTTACCAGTGTCAAGTTATCAGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

365

Amino Acids

41.62

Weight (kDa)

5.65

Isoelectric Point (pI)

62.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	61 - 158	6.9e-34	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	167, 571
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccI	GTMKAC	2 cut(s)	327, 399
AciI	CCGC	5 cut(s)	31, 113, 449, 1022, 1025
AclWI	GGATC	2 cut(s)	880, 1023
AcuI	CTGAAG	1 cut(s)	1045
AfaI	GTAC	3 cut(s)	434, 491, 616
AfiI	CCNNNNNNNGG	2 cut(s)	401, 442
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	7 cut(s)	272, 310, 340, 464, 836, 887, 1042
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	8 cut(s)	72, 236, 286, 460, 481, 530, 901, 1092
AluI	AGCT	8 cut(s)	72, 236, 286, 460, 481, 530, 901, 1092
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	2 cut(s)	123, 341
Alw44I	GTGCAC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	880, 1023
AoxI	GGCC	1 cut(s)	180
ApaLI	GTGCAC	1 cut(s)	214
ApeKI	GCWGC	9 cut(s)	188, 446, 514, 517, 682, 685, 901, 1049, 1052
Asp700I	GAANNNNTTC	3 cut(s)	390, 831, 882
AspLEI	GCGC	1 cut(s)	778
AsuHPI	GGTGA	1 cut(s)	781
BaeGI	GKGCMC	2 cut(s)	218, 230
BanI	GGYRCC	2 cut(s)	167, 571
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	9 cut(s)	175, 433, 526, 529, 694, 697, 888, 1036, 1064
BccI	CCATC	3 cut(s)	30, 368, 602
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	123, 341
BfaI	CTAG	2 cut(s)	863, 1093
BfmI	CTRYAG	1 cut(s)	1050
BfrI	CTTAAG	1 cut(s)	161
BmcAI	AGTACT	1 cut(s)	616
Bme1390I	CCNGG	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	143, 169, 573
BmrFI	CCNGG	1 cut(s)	179
BmrI	ACTGGG	1 cut(s)	835
BmsI	GCATC	2 cut(s)	700, 810
BmuI	ACTGGG	1 cut(s)	835
BpuEI	CTTGAG	2 cut(s)	952, 974
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	756, 867
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 442
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	841, 1071
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	756, 867
BseGI	GGATG	1 cut(s)	1033
BseLI	CCNNNNNNNGG	2 cut(s)	401, 442
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	841, 1071
BseRI	GAGGAG	2 cut(s)	5, 8
BseSI	GKGCMC	2 cut(s)	218, 230
BseXI	GCAGC	9 cut(s)	175, 433, 526, 529, 694, 697, 888, 1036, 1064
BseYI	CCCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	887
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	2 cut(s)	167, 571
BsiHKAI	GWGCWC	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	79, 395
BslI	CCNNNNNNNGG	2 cut(s)	401, 442
BsmAI	GTCTC	2 cut(s)	123, 341
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	218, 230
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	872, 1015
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	5 cut(s)	31, 113, 449, 1022, 1025
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	3 cut(s)	143, 169, 573
BspMAI	CTGCAG	1 cut(s)	1054
BspPI	GGATC	2 cut(s)	880, 1023
BspT107I	GGYRCC	2 cut(s)	167, 571
BspTI	CTTAAG	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	78
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	841, 1071
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	756, 867
BssMI	GATC	2 cut(s)	872, 1015
BssT1I	CCWWGG	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	325, 832, 936
Bst6I	CTCTTC	1 cut(s)	1037
BstAFI	CTTAAG	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	4 cut(s)	193, 218, 483, 1057
BstDEI	CTNAG	2 cut(s)	68, 222
BstDSI	CCRYGG	2 cut(s)	756, 867
BstF5I	GGATG	1 cut(s)	1033
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	2 cut(s)	875, 1018
BstMAI	GTCTC	2 cut(s)	123, 341
BstMBI	GATC	2 cut(s)	872, 1015
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 88, 188
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	2 cut(s)	195, 1059
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	1050
BstSLI	GKGCMC	2 cut(s)	218, 230
BstV1I	GCAGC	9 cut(s)	175, 433, 526, 529, 694, 697, 888, 1036, 1064
BsuRI	GGCC	1 cut(s)	182
BtgI	CCRYGG	2 cut(s)	756, 867
BtsCI	GGATG	1 cut(s)	1033
BtsIMutI	CAGTG	1 cut(s)	1078
Cac8I	GCNNGC	4 cut(s)	193, 218, 483, 1057
CfoI	GCGC	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	78
Csp6I	GTAC	3 cut(s)	433, 490, 615
CviAII	CATG	7 cut(s)	192, 352, 568, 656, 868, 1019, 1056
CviQI	GTAC	3 cut(s)	433, 490, 615
DdeI	CTNAG	2 cut(s)	68, 222
DpnI	GATC	2 cut(s)	874, 1017
DpnII	GATC	2 cut(s)	872, 1015
DraI	TTTAAA	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	1037
EarI	CTCTTC	1 cut(s)	1037
EciI	GGCGGA	1 cut(s)	1040
Eco130I	CCWWGG	1 cut(s)	867
Eco147I	AGGCCT	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	1045
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	7 cut(s)	195, 355, 571, 659, 871, 1022, 1059
FatI	CATG	7 cut(s)	191, 351, 567, 655, 867, 1018, 1055
FauNDI	CATATG	1 cut(s)	365
FblI	GTMKAC	2 cut(s)	327, 399
FokI	GGATG	1 cut(s)	1040
FspBI	CTAG	2 cut(s)	863, 1093
GlaI	GCGC	1 cut(s)	777
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	2 cut(s)	79, 395
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	7 cut(s)	195, 355, 571, 659, 871, 1022, 1059
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	2 cut(s)	70, 284
HinfI	GANTC	4 cut(s)	737, 947, 965, 983
HpaII	CCGG	2 cut(s)	79, 395
HphI	GGTGA	1 cut(s)	781
Hpy166II	GTNNAC	3 cut(s)	216, 328, 400
Hpy188I	TCNGA	4 cut(s)	103, 383, 877, 979
Hpy188III	TCNNGA	2 cut(s)	307, 887
Hpy8I	GTNNAC	3 cut(s)	216, 328, 400
Hpy99I	CGWCG	2 cut(s)	129, 710
HpyCH4III	ACNGT	3 cut(s)	325, 832, 936
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 88, 188
HpyF3I	CTNAG	2 cut(s)	68, 222
Hsp92II	CATG	7 cut(s)	195, 355, 571, 659, 871, 1022, 1059
HspAI	GCGC	1 cut(s)	776
Kzo9I	GATC	2 cut(s)	872, 1015
LmnI	GCTCC	3 cut(s)	241, 451, 457
Lsp1109I	GCAGC	9 cut(s)	175, 433, 526, 529, 694, 697, 888, 1036, 1064
LweI	GCATC	2 cut(s)	700, 810
MaeI	CTAG	2 cut(s)	863, 1093
MaeIII	GTNAC	2 cut(s)	544, 667
MalI	GATC	2 cut(s)	874, 1017
MboI	GATC	2 cut(s)	872, 1015
MboII	GAAGA	5 cut(s)	219, 322, 890, 992, 1054
MfeI	CAATTG	2 cut(s)	425, 554
MhlI	GDGCHC	2 cut(s)	218, 230
MluCI	AATT	4 cut(s)	55, 425, 554, 560
MlyI	GAGTC	2 cut(s)	731, 959
MnlI	CCTC	7 cut(s)	17, 26, 29, 75, 406, 559, 949
MroXI	GAANNNNTTC	3 cut(s)	390, 831, 882
MseI	TTAA	4 cut(s)	75, 162, 318, 605
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	2 cut(s)	79, 395
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	2 cut(s)	425, 554
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	39, 88, 188
NcoI	CCATGG	1 cut(s)	867
NdeI	CATATG	1 cut(s)	365
NdeII	GATC	2 cut(s)	872, 1015
NlaIII	CATG	7 cut(s)	195, 355, 571, 659, 871, 1022, 1059
NlaIV	GGNNCC	3 cut(s)	143, 169, 573
NmuCI	GTSAC	1 cut(s)	544
NspI	RCATGY	2 cut(s)	195, 1059
PaeI	GCATGC	2 cut(s)	195, 1059
PceI	AGGCCT	1 cut(s)	182
PctI	GAATGC	1 cut(s)	42
PdmI	GAANNNNTTC	3 cut(s)	390, 831, 882
PfeI	GAWTC	2 cut(s)	947, 983
PflMI	CCANNNNNTGG	1 cut(s)	442
PleI	GAGTC	2 cut(s)	731, 959
PpsI	GAGTC	2 cut(s)	731, 959
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	143, 169, 573
PstI	CTGCAG	1 cut(s)	1054
RsaI	GTAC	3 cut(s)	434, 491, 616
RsaNI	GTAC	3 cut(s)	433, 490, 615
SalI	GTCGAC	1 cut(s)	326
SaqAI	TTAA	4 cut(s)	75, 162, 318, 605
Sau3AI	GATC	2 cut(s)	872, 1015
ScaI	AGTACT	1 cut(s)	616
SchI	GAGTC	2 cut(s)	731, 959
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	218, 230
SfaNI	GCATC	2 cut(s)	700, 810
SfcI	CTRYAG	1 cut(s)	1050
SmlI	CTYRAG	3 cut(s)	161, 967, 989
SmoI	CTYRAG	3 cut(s)	161, 967, 989
SphI	GCATGC	2 cut(s)	195, 1059
Sse9I	AATT	4 cut(s)	55, 425, 554, 560
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	5 cut(s)	31, 113, 449, 1022, 1025
SspMI	CTAG	2 cut(s)	863, 1093
StuI	AGGCCT	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	3 cut(s)	325, 832, 936
TaqI	TCGA	2 cut(s)	327, 700
TasI	AATT	4 cut(s)	55, 425, 554, 560
TatI	WGTACW	2 cut(s)	489, 614
TauI	GCSGC	1 cut(s)	1025
TfiI	GAWTC	2 cut(s)	947, 983
Tru1I	TTAA	4 cut(s)	75, 162, 318, 605
Tru9I	TTAA	4 cut(s)	75, 162, 318, 605
TscAI	CASTG	1 cut(s)	1078
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	9 cut(s)	188, 446, 514, 517, 682, 685, 901, 1049, 1052
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	4 cut(s)	35, 48, 368, 461
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	1 cut(s)	1078
Van91I	CCANNNNNTGG	1 cut(s)	442
Vha464I	CTTAAG	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	214
XceI	RCATGY	2 cut(s)	195, 1059
XmiI	GTMKAC	2 cut(s)	327, 399
XmnI	GAANNNNTTC	3 cut(s)	390, 831, 882
XspI	CTAG	2 cut(s)	863, 1093
ZrmI	AGTACT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.