Rh7BG032900

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005135
Physical Location & Seq
Reverse (-)
2175243 .. 2176692
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG032900.1

Sequence Viewer

Length: 1170 bp
ATGTTGCTTCTCATACCCACATTCTTCTTCACCATCACCATCTTCCTCACATCCTTCTTCTTCCTCATTCTTCTTCTCCATCATTACCGCCACCTTTGCAATATTCATCTCTCCAACTCATTTCTAAGCTTTCGATGGCTACATTTGCCACATTGGTTTGAACCACCACCGCAACGAAGCCGACGACACTTACTTGGTTCAGACAACATAATGACCCTTAAGGGTGCCACCAGCCAGGCCTGTGCTGCATGCAAATACCAAAGAAGAAAGTGCACGCCAGAGTGCCCTTTAGCTCCTTATTTCCCTCCAGACCAACCCAAAATGTTTCAAAATGCACACAAGCTTTTCGGGGTCTGCAACATCTTGAAGATACTTAAAAGTGTCGACCCTTGTCTCAAGTTTGAGACCATGAAGTCCATCATCTACCAAGCCAACATTCGAGACAAGTTTCCGGTCTACGGCTGTTGGGAGGTGATCTGGCAATTACAGTACCAGATTATGGTTGCAGAGCAGGAGCTTCAAAATGTTCATAAACAGCTTGCATTGTACAGACAACATCACTACCACCAGCAGCAGCAGATTTCAGCTATGCCAGATTATGTGACCTCACAATTAGAATTGGGCATGGCACCACCAAATAATAATAATAATACCATCTCACTTTTACATCATATTACTCCACAATCTTATGATAACAATAATACTGCCATACCTCATGCTTTGCCTGTAACACAACAACAACAACAGCAGCAGCAGCAGCCTTACTCTCATCGAAGCGACAATGCTTACACTTCTGCTTATAACATTGACTCCAAGGAGAATATTACAGGGGAGAATGTTTTGTGGGCGCAAAATCCTTTCACTAACAACAACAGCAGTATCAATGAGAACAACGATAATGCAGAGACAGTTCAATCCCAGTTCGGAGTTTCGCAGACACTAGCTATTGAATCAGAAGATGTTCAAGATTACGATGAGCTGCACCCATTTTTCGATACCATAGATGATAGACAGTCATACATTGATTGCAAAGAGGCTTATGATTCAAGCAGTTCGGAAGAATCTTTTAAGGACACAACACAATTATCGATGGATCATGCGGCGGAGAACACATTGAAGAGTGCTGCAGCATGCTTCAGTCTTACCAGTGTCAAGTTATCAGTAAGCTAG

Protein Analysis

389

Amino Acids

44.86

Weight (kDa)

5.95

Isoelectric Point (pI)

67.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 80 - 177 9.1e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AasI GACNNNNNNGTC 1 cut(s) 412
AccB1I GGYRCC 2 cut(s) 224, 628
AccB7I CCANNNNNTGG 1 cut(s) 499
AccI GTMKAC 2 cut(s) 384, 456
AciI CCGC 4 cut(s) 88, 170, 1100, 1103
AclWI GGATC 1 cut(s) 1101
AcuI CTGAAG 1 cut(s) 1120
AfaI GTAC 2 cut(s) 491, 548
AfiI CCNNNNNNNGG 2 cut(s) 458, 499
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 9 cut(s) 161, 329, 367, 521, 914, 950, 965, 1047, 1117
AjnI CCWGG 1 cut(s) 234
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AluBI AGCT 9 cut(s) 129, 293, 343, 517, 538, 587, 944, 979, 1167
AluI AGCT 9 cut(s) 129, 293, 343, 517, 538, 587, 944, 979, 1167
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 4 cut(s) 398, 398, 435, 899
Alw44I GTGCAC 1 cut(s) 271
AlwI GGATC 1 cut(s) 1101
AoxI GGCC 1 cut(s) 237
ApaLI GTGCAC 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 960
AspLEI GCGC 1 cut(s) 850
AsuHPI GGTGA 3 cut(s) 22, 28, 484
BaeGI GKGCMC 2 cut(s) 275, 287
BaeI ACNNNNGTAYC 2 cut(s) 862, 895
BanI GGYRCC 2 cut(s) 224, 628
Bbv12I GWGCWC 1 cut(s) 275
BccI CCATC 7 cut(s) 41, 47, 87, 129, 425, 662, 1084
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 236
BcoDI GTCTC 4 cut(s) 398, 398, 435, 899
BfaI CTAG 2 cut(s) 941, 1168
BfmI CTRYAG 1 cut(s) 1125
BfrI CTTAAG 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 226, 630
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 913
BmuI ACTGGG 1 cut(s) 913
BoxI GACNNNNGTC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 1088
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 813
BsaWI WCCGGW 1 cut(s) 451
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 499
Bse1I ACTGG 2 cut(s) 919, 1146
BseBI CCWGG 1 cut(s) 236
BseCI ATCGAT 1 cut(s) 1088
BseDI CCNNGG 1 cut(s) 813
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 458, 499
BseNI ACTGG 2 cut(s) 919, 1146
BseSI GKGCMC 2 cut(s) 275, 287
BsgI GTGCAG 1 cut(s) 965
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 2 cut(s) 224, 628
BshVI ATCGAT 1 cut(s) 1088
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 458, 499
BsmAI GTCTC 4 cut(s) 398, 398, 435, 899
BsnI GGCC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 275, 287
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 2 cut(s) 474, 1093
BspACI CCGC 4 cut(s) 88, 170, 1100, 1103
BspANI GGCC 1 cut(s) 239
BspDI ATCGAT 1 cut(s) 1088
BspLI GGNNCC 2 cut(s) 226, 630
BspMAI CTGCAG 1 cut(s) 1129
BspPI GGATC 1 cut(s) 1101
BspT107I GGYRCC 2 cut(s) 224, 628
BspTI CTTAAG 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 398
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 2 cut(s) 919, 1146
BssECI CCNNGG 1 cut(s) 813
BssMI GATC 2 cut(s) 474, 1093
BssT1I CCWWGG 1 cut(s) 813
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 3 cut(s) 489, 910, 1014
Bst6I CTCTTC 1 cut(s) 1112
BstAFI CTTAAG 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 546
BstC8I GCNNGC 4 cut(s) 250, 275, 540, 1132
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 50
BstHHI GCGC 1 cut(s) 850
BstKTI GATC 2 cut(s) 477, 1096
BstMAI GTCTC 4 cut(s) 398, 398, 435, 899
BstMBI GATC 2 cut(s) 474, 1093
BstMWI GCNNNNNNNGC 5 cut(s) 96, 145, 245, 754, 757
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 2 cut(s) 252, 1134
BstPAI GACNNNNGTC 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 1125
BstSLI GKGCMC 2 cut(s) 275, 287
Bsu15I ATCGAT 1 cut(s) 1088
BsuRI GGCC 1 cut(s) 239
BsuTUI ATCGAT 1 cut(s) 1088
BtsCI GGATG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 1153
Cac8I GCNNGC 4 cut(s) 250, 275, 540, 1132
CfoI GCGC 1 cut(s) 850
ClaI ATCGAT 1 cut(s) 1088
Csp6I GTAC 2 cut(s) 490, 547
CviAII CATG 6 cut(s) 249, 409, 625, 716, 1097, 1131
CviQI GTAC 2 cut(s) 490, 547
DdeI CTNAG 1 cut(s) 125
DpnI GATC 2 cut(s) 476, 1095
DpnII GATC 2 cut(s) 474, 1093
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 1112
EarI CTCTTC 1 cut(s) 1112
EciI GGCGGA 1 cut(s) 1118
Eco130I CCWWGG 1 cut(s) 813
Eco147I AGGCCT 1 cut(s) 239
Eco31I GGTCTC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 1120
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 813
FaeI CATG 6 cut(s) 252, 412, 628, 719, 1100, 1134
FatI CATG 6 cut(s) 248, 408, 624, 715, 1096, 1130
FblI GTMKAC 2 cut(s) 384, 456
FokI GGATG 1 cut(s) 37
FspBI CTAG 2 cut(s) 941, 1168
GlaI GCGC 1 cut(s) 849
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 452
HhaI GCGC 1 cut(s) 850
Hin1II CATG 6 cut(s) 252, 412, 628, 719, 1100, 1134
Hin6I GCGC 1 cut(s) 848
HinP1I GCGC 1 cut(s) 848
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 2 cut(s) 127, 341
HinfI GANTC 4 cut(s) 809, 950, 1043, 1061
HpaII CCGG 1 cut(s) 452
HphI GGTGA 3 cut(s) 22, 28, 484
Hpy166II GTNNAC 3 cut(s) 273, 385, 457
Hpy188I TCNGA 4 cut(s) 202, 926, 955, 1057
Hpy188III TCNNGA 4 cut(s) 308, 364, 440, 965
Hpy8I GTNNAC 3 cut(s) 273, 385, 457
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 3 cut(s) 489, 910, 1014
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 145, 245, 754, 757
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 6 cut(s) 252, 412, 628, 719, 1100, 1134
HspAI GCGC 1 cut(s) 848
Kzo9I GATC 2 cut(s) 474, 1093
LmnI GCTCC 2 cut(s) 298, 514
MaeI CTAG 2 cut(s) 941, 1168
MaeIII GTNAC 2 cut(s) 601, 727
MalI GATC 2 cut(s) 476, 1095
MboI GATC 2 cut(s) 474, 1093
MhlI GDGCHC 2 cut(s) 275, 287
MluCI AATT 4 cut(s) 482, 611, 617, 1082
MlyI GAGTC 1 cut(s) 803
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 7 cut(s) 56, 74, 315, 463, 616, 723, 1027
MroXI GAANNNNTTC 1 cut(s) 960
MseI TTAA 3 cut(s) 219, 375, 1068
MspCI CTTAAG 1 cut(s) 218
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 5 cut(s) 96, 145, 245, 754, 757
NdeII GATC 2 cut(s) 474, 1093
NlaIII CATG 6 cut(s) 252, 412, 628, 719, 1100, 1134
NlaIV GGNNCC 2 cut(s) 226, 630
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 2 cut(s) 252, 1134
PaeI GCATGC 2 cut(s) 252, 1134
PceI AGGCCT 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 3 cut(s) 950, 1043, 1061
PflMI CCANNNNNTGG 1 cut(s) 499
PleI GAGTC 1 cut(s) 803
PpsI GAGTC 1 cut(s) 803
PshAI GACNNNNGTC 1 cut(s) 390
PsiI TTATAA 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 226, 630
PstI CTGCAG 1 cut(s) 1129
RsaI GTAC 2 cut(s) 491, 548
RsaNI GTAC 2 cut(s) 490, 547
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 219, 375, 1068
Sau3AI GATC 2 cut(s) 474, 1093
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 2 cut(s) 275, 287
SfcI CTRYAG 1 cut(s) 1125
SmlI CTYRAG 2 cut(s) 218, 395
SmoI CTYRAG 2 cut(s) 218, 395
SphI GCATGC 2 cut(s) 252, 1134
Sse9I AATT 4 cut(s) 482, 611, 617, 1082
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 4 cut(s) 88, 170, 1100, 1103
SspI AATATT 2 cut(s) 103, 823
SspMI CTAG 2 cut(s) 941, 1168
StuI AGGCCT 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 813
TaaI ACNGT 3 cut(s) 489, 910, 1014
TaqI TCGA 6 cut(s) 133, 384, 439, 772, 993, 1088
TasI AATT 4 cut(s) 482, 611, 617, 1082
TatI WGTACW 1 cut(s) 546
TauI GCSGC 1 cut(s) 1103
TfiI GAWTC 3 cut(s) 950, 1043, 1061
Tru1I TTAA 3 cut(s) 219, 375, 1068
Tru9I TTAA 3 cut(s) 219, 375, 1068
TscAI CASTG 1 cut(s) 1153
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 3 cut(s) 95, 425, 518
TspRI CASTG 1 cut(s) 1153
Van91I CCANNNNNTGG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 271
XceI RCATGY 2 cut(s) 252, 1134
XmiI GTMKAC 2 cut(s) 384, 456
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 2 cut(s) 941, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.