Rmu_sc0012846.1_g000002

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012846.1
OG0005135
Physical Location & Seq
Reverse (-)
1478 .. 2567
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012846.1_g000002.1.cds

Sequence Viewer

Length: 876 bp
atgacgatcaaaggaggcacaagccaggcctgtgctgcatgcaaataccagagacgacggtgcaccaaagactgcgatctcgcccctcattttccggccgaccagcccaaaatgttccagaacgctcaccgcctctacggcgtttcaaacattatgaagatcctgaagcagactcacccggagcagaaagaagaggcgatgcgatccattatctacgaatccaacatgagagccaagtttcccgtcaccgggtgcatgggaatcatcaaccaattgacattccaactccagcaagccttcgatgagctccggtacgtccggtcccatctcgccatctgccgggaccagtgccagtaccagtacaattcaccttcgtgtccatcttctcagttgcaattaggtattcaaacaaacgaccacgaggcgctgcagctctaccagcagcagtaccaatatcatcagtataactctgccgccggtaccagcgccggtggtggtgggatgtcgttgatggcgaacgagtatctggcgaatgggattaatggggtttacattgatgacaatgatagtgtggtaaaacctcttagggttcagcagttttattatgggaacaataatgttgatgctgtggctgttcaacataatttgatcacatcccaagggtttcctattcaacaagaaatggatgttcctcatgattatgatgacattccatttgatacaattgctgatgatcgtcaatcgtatatcgattctaaggaagcctgtgaatcgagtgccgagtcagccttcaagggtactaccacgcagtcgttagaacatgtctcccagaatgacctcaagagtgcagcagcatgcttcagtctaacaagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

291

Amino Acids

32.64

Weight (kDa)

5.55

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 479
AciI CCGC 2 cut(s) 130, 474
AclWI GGATC 2 cut(s) 154, 198
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 185, 844
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 6 cut(s) 314, 356, 362, 449, 481, 799
AfiI CCNNNNNNNGG 3 cut(s) 248, 249, 339
AflIII ACRYGT 1 cut(s) 820
AgsI TTSAA 5 cut(s) 147, 407, 638, 674, 793
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 373
AluBI AGCT 3 cut(s) 307, 433, 873
AluI AGCT 3 cut(s) 307, 433, 873
Alw21I GWGCWC 2 cut(s) 65, 309
Alw26I GTCTC 2 cut(s) 46, 829
Alw44I GTGCAC 1 cut(s) 61
AlwI GGATC 2 cut(s) 154, 198
AoxI GGCC 2 cut(s) 27, 96
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 6 cut(s) 35, 427, 430, 442, 848, 851
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
AseI ATTAAT 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 479
AspLEI GCGC 2 cut(s) 427, 488
AspS9I GGNCC 2 cut(s) 321, 343
AsuC2I CCSGG 3 cut(s) 179, 250, 341
AsuHPI GGTGA 4 cut(s) 119, 167, 238, 360
AvaII GGWCC 2 cut(s) 321, 343
BaeGI GKGCMC 1 cut(s) 65
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 309
BauI CACGAG 1 cut(s) 419
Bbv12I GWGCWC 2 cut(s) 65, 309
BbvI GCAGC 6 cut(s) 22, 414, 442, 454, 860, 863
BccI CCATC 4 cut(s) 333, 341, 388, 505
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 1 cut(s) 648
BcnI CCSGG 3 cut(s) 179, 250, 341
BcoDI GTCTC 2 cut(s) 46, 829
BfaI CTAG 1 cut(s) 874
BfmI CTRYAG 1 cut(s) 428
BfoI RGCGCY 2 cut(s) 428, 489
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 7 cut(s) 36, 428, 431, 443, 474, 849, 852
BlsI GCNGC 7 cut(s) 37, 429, 432, 444, 475, 850, 853
Bme1390I CCNGG 4 cut(s) 26, 179, 250, 341
Bme18I GGWCC 2 cut(s) 321, 343
BmgT120I GGNCC 2 cut(s) 321, 343
BmiI GGNNCC 3 cut(s) 323, 344, 481
BmrFI CCNGG 4 cut(s) 26, 179, 250, 341
BmsI GCATC 2 cut(s) 189, 613
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 824
BpuMI CCSGG 3 cut(s) 179, 250, 341
Bsa29I ATCGAT 1 cut(s) 750
BsaJI CCNNGG 1 cut(s) 658
BsaWI WCCGGW 2 cut(s) 309, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 249, 339
Bse118I RCCGGY 2 cut(s) 476, 488
Bse1I ACTGG 3 cut(s) 346, 352, 358
BseBI CCWGG 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 750
BseDI CCNNGG 1 cut(s) 658
BseGI GGATG 3 cut(s) 507, 653, 691
BseLI CCNNNNNNNGG 3 cut(s) 248, 249, 339
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 3 cut(s) 346, 352, 358
BseSI GKGCMC 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 6 cut(s) 22, 414, 442, 454, 860, 863
BsgI GTGCAG 1 cut(s) 867
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 29, 98
BshNI GGYRCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 750
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 65, 309
BsiSI CCGG 8 cut(s) 95, 179, 249, 310, 319, 340, 477, 489
BslFI GGGAC 2 cut(s) 307, 356
BslI CCNNNNNNNGG 3 cut(s) 248, 249, 339
BsmAI GTCTC 2 cut(s) 46, 829
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 307, 356
BsnI GGCC 2 cut(s) 29, 98
Bsp1286I GDGCHC 2 cut(s) 65, 309
Bsp143I GATC 6 cut(s) 6, 76, 159, 203, 648, 733
BspACI CCGC 2 cut(s) 130, 474
BspANI GGCC 2 cut(s) 29, 98
BspCNI CTCAG 1 cut(s) 400
BspDI ATCGAT 1 cut(s) 750
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 3 cut(s) 323, 344, 481
BspMAI CTGCAG 1 cut(s) 432
BspPI GGATC 2 cut(s) 154, 198
BspT107I GGYRCC 1 cut(s) 479
BsrFI RCCGGY 2 cut(s) 476, 488
BsrI ACTGG 3 cut(s) 346, 352, 358
BssAI RCCGGY 2 cut(s) 476, 488
BssECI CCNNGG 1 cut(s) 658
BssMI GATC 6 cut(s) 6, 76, 159, 203, 648, 733
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 658
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 40, 294, 856
BstDEI CTNAG 3 cut(s) 387, 584, 756
BstF5I GGATG 3 cut(s) 507, 653, 691
BstH2I RGCGCY 2 cut(s) 428, 489
BstHHI GCGC 2 cut(s) 427, 488
BstKTI GATC 6 cut(s) 9, 79, 162, 206, 651, 736
BstMAI GTCTC 2 cut(s) 46, 829
BstMBI GATC 6 cut(s) 6, 76, 159, 203, 648, 733
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 35, 138, 439, 785
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 3 cut(s) 42, 824, 858
BstSCI CCNGG 4 cut(s) 24, 177, 248, 339
BstSFI CTRYAG 1 cut(s) 428
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 6 cut(s) 22, 414, 442, 454, 860, 863
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BstZI CGGCCG 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 750
BsuRI GGCC 2 cut(s) 29, 98
BsuTUI ATCGAT 1 cut(s) 750
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 3 cut(s) 507, 653, 691
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 3 cut(s) 40, 294, 856
CciI TCATGA 1 cut(s) 694
CfoI GCGC 2 cut(s) 427, 488
Cfr10I RCCGGY 2 cut(s) 476, 488
Cfr13I GGNCC 2 cut(s) 321, 343
ClaI ATCGAT 1 cut(s) 750
Csp6I GTAC 6 cut(s) 313, 355, 361, 448, 480, 798
CviAII CATG 6 cut(s) 39, 226, 256, 695, 821, 855
CviQI GTAC 6 cut(s) 313, 355, 361, 448, 480, 798
DdeI CTNAG 3 cut(s) 387, 584, 756
DpnI GATC 6 cut(s) 8, 78, 161, 205, 650, 735
DpnII GATC 6 cut(s) 6, 76, 159, 203, 648, 733
DraIII CACNNNGTG 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 307
EclXI CGGCCG 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 658
Eco147I AGGCCT 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 321, 343
Eco52I CGGCCG 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 185, 844
EcoICRI GAGCTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 658
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 6 cut(s) 42, 229, 259, 698, 824, 858
FaqI GGGAC 2 cut(s) 307, 356
FatI CATG 6 cut(s) 38, 225, 255, 694, 820, 854
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 7 cut(s) 36, 428, 431, 443, 474, 849, 852
FokI GGATG 3 cut(s) 514, 640, 698
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 7 cut(s) 36, 428, 431, 443, 474, 849, 852
FspBI CTAG 1 cut(s) 874
GlaI GCGC 2 cut(s) 426, 487
GluI GCNGC 7 cut(s) 36, 428, 431, 443, 474, 849, 852
GsuI CTGGAG 1 cut(s) 272
HaeII RGCGCY 2 cut(s) 428, 489
HaeIII GGCC 2 cut(s) 29, 98
HapII CCGG 8 cut(s) 95, 179, 249, 310, 319, 340, 477, 489
HhaI GCGC 2 cut(s) 427, 488
Hin1II CATG 6 cut(s) 42, 229, 259, 698, 824, 858
Hin6I GCGC 2 cut(s) 425, 486
HinP1I GCGC 2 cut(s) 425, 486
HinfI GANTC 6 cut(s) 172, 218, 261, 752, 770, 782
HpaII CCGG 8 cut(s) 95, 179, 249, 310, 319, 340, 477, 489
HphI GGTGA 4 cut(s) 119, 167, 238, 360
Hpy166II GTNNAC 2 cut(s) 63, 550
Hpy188III TCNNGA 4 cut(s) 118, 163, 695, 841
Hpy8I GTNNAC 2 cut(s) 63, 550
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 3 cut(s) 307, 381, 799
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 7 cut(s) 38, 42, 63, 255, 394, 430, 848
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 138, 439, 785
HpyF3I CTNAG 3 cut(s) 387, 584, 756
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 6 cut(s) 42, 229, 259, 698, 824, 858
HspAI GCGC 2 cut(s) 425, 486
KpnI GGTACC 1 cut(s) 483
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 6 cut(s) 6, 76, 159, 203, 648, 733
LmnI GCTCC 2 cut(s) 181, 312
Lsp1109I GCAGC 6 cut(s) 22, 414, 442, 454, 860, 863
LweI GCATC 2 cut(s) 189, 613
MaeI CTAG 1 cut(s) 874
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 244
MalI GATC 6 cut(s) 8, 78, 161, 205, 650, 735
MboI GATC 6 cut(s) 6, 76, 159, 203, 648, 733
MboII GAAGA 3 cut(s) 169, 203, 375
MfeI CAATTG 2 cut(s) 272, 723
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 65, 309
MluCI AATT 5 cut(s) 272, 364, 395, 643, 723
MlyI GAGTC 2 cut(s) 166, 791
MmeI TCCRAC 2 cut(s) 246, 307
MnlI CCTC 8 cut(s) 8, 96, 143, 187, 415, 591, 702, 848
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 2 cut(s) 373, 699
MspI CCGG 8 cut(s) 95, 179, 249, 310, 319, 340, 477, 489
MspR9I CCNGG 4 cut(s) 26, 179, 250, 341
MunI CAATTG 2 cut(s) 272, 723
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 4 cut(s) 35, 138, 439, 785
NciI CCSGG 3 cut(s) 179, 250, 341
NdeII GATC 6 cut(s) 6, 76, 159, 203, 648, 733
NlaIII CATG 6 cut(s) 42, 229, 259, 698, 824, 858
NlaIV GGNNCC 3 cut(s) 323, 344, 481
NmeAIII GCCGAG 1 cut(s) 805
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 3 cut(s) 42, 824, 858
OliI CACNNNNGTG 1 cut(s) 373
PaeI GCATGC 2 cut(s) 42, 858
PagI TCATGA 1 cut(s) 694
PceI AGGCCT 1 cut(s) 29
PciI ACATGT 1 cut(s) 820
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PfeI GAWTC 4 cut(s) 218, 261, 752, 770
PkrI GCNGC 7 cut(s) 37, 429, 432, 444, 475, 850, 853
PleI GAGTC 2 cut(s) 166, 790
PpsI GAGTC 2 cut(s) 166, 790
PscI ACATGT 1 cut(s) 820
PshBI ATTAAT 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 323, 344, 481
PspPI GGNCC 2 cut(s) 321, 343
PstI CTGCAG 1 cut(s) 432
PsuI RGATCY 1 cut(s) 159
RsaI GTAC 6 cut(s) 314, 356, 362, 449, 481, 799
RsaNI GTAC 6 cut(s) 313, 355, 361, 448, 480, 798
RseI CAYNNNNRTG 2 cut(s) 373, 699
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 7 cut(s) 36, 428, 431, 443, 474, 849, 852
Sau3AI GATC 6 cut(s) 6, 76, 159, 203, 648, 733
Sau96I GGNCC 2 cut(s) 321, 343
SchI GAGTC 2 cut(s) 166, 791
ScrFI CCNGG 4 cut(s) 26, 179, 250, 341
SduI GDGCHC 2 cut(s) 65, 309
SetI ASST 8 cut(s) 309, 318, 373, 403, 435, 583, 840, 875
SfaNI GCATC 2 cut(s) 189, 613
SfcI CTRYAG 1 cut(s) 428
SgrAI CRCCGGYG 1 cut(s) 488
SinI GGWCC 2 cut(s) 321, 343
SmiMI CAYNNNNRTG 2 cut(s) 373, 699
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
SphI GCATGC 2 cut(s) 42, 858
Sse9I AATT 5 cut(s) 272, 364, 395, 643, 723
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 2 cut(s) 130, 474
SspMI CTAG 1 cut(s) 874
SstI GAGCTC 1 cut(s) 309
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 4 cut(s) 24, 177, 248, 339
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 1 cut(s) 60
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 300, 750, 773
TasI AATT 5 cut(s) 272, 364, 395, 643, 723
TatI WGTACW 1 cut(s) 360
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 4 cut(s) 218, 261, 752, 770
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 1 cut(s) 353
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 6 cut(s) 35, 427, 430, 442, 848, 851
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 321, 343
VspI ATTAAT 1 cut(s) 540
XceI RCATGY 3 cut(s) 42, 824, 858
XspI CTAG 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.