Rroxscaffold_2G00082240

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005135
Physical Location & Seq
Reverse (-)
5143764 .. 5144730
967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082240.1

Sequence Viewer

Length: 765 bp
ATGTTCCAGAACGCTCACCGCCTCTACGGCGTTTCAAACATTATGAAGATCCTGAAGCAGACTCACCCGGAGCAGAAAGAAGAGGCGATGCGATCCATTATCTACGAATCCAACATGAGAGCCAAGTTTCCCGTCACCGGGTGCATGGGAATCATCAACCAATTGACATTCCAACTCCAGCAAGCCTTCGATGAGCTCCGGTACGTCCGGTCCCATCTCGCCATCTGCCGGGACCAGTGCCAGTACCAGTACAATTCACCTTCGTGTCCATCTTCTCAGTTGCAATTAGGGATTCAAACAAACGACCACGAGGCGCTGCAGCTCTACCAGCAGCAGTACCAATATCATCAGTATAACTCTGCCGCCGGTAGCAGCGCCGGTGGTGGTGGGATGTCGTTGATGGCGAACGAGTATCTGGCGAATGGGATTAATGGGGTTTACATCGATGACAATGATAGTGTGGTAAAACCTCTTAGGGTTCAGCAGTTTTATTATGGGAACAATAATGTTGATGCTGTGGCTGTTCAACATAATTTGATCACATCCCAAGGGTTTCCTATTCAACAAGAAATGGATGTTCCTCATGATTATGATGACATTCCATTTGATACAATTGCTGATGATCGTCAATCGTATATCGATTCTAAGGAAGCCTGTGAATCGAGTGCCGAGTCAGCCTTCAAGGGTACTACCACGCAGTCGTTAGAACATGTCTCCCAGAATGACCTCAAGAGTGCAGCAGCATGCTTCAGTCTAACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

254

Amino Acids

28.54

Weight (kDa)

4.95

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 69 2.1e-19 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 19, 363
AclWI GGATC 2 cut(s) 43, 87
AcuI CTGAAG 2 cut(s) 74, 733
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 5 cut(s) 203, 245, 251, 338, 688
AfiI CCNNNNNNNGG 3 cut(s) 137, 138, 228
AflIII ACRYGT 1 cut(s) 709
AgsI TTSAA 5 cut(s) 36, 296, 527, 563, 682
AleI CACNNNNGTG 1 cut(s) 262
AluBI AGCT 3 cut(s) 196, 322, 762
AluI AGCT 3 cut(s) 196, 322, 762
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 718
AlwI GGATC 2 cut(s) 43, 87
ApeKI GCWGC 6 cut(s) 316, 319, 331, 372, 737, 740
ArsI GACNNNNNNTTYG 2 cut(s) 587, 619
AseI ATTAAT 1 cut(s) 429
AspLEI GCGC 2 cut(s) 316, 377
AspS9I GGNCC 2 cut(s) 210, 232
AsuC2I CCSGG 3 cut(s) 68, 139, 230
AsuHPI GGTGA 4 cut(s) 8, 56, 127, 249
AvaII GGWCC 2 cut(s) 210, 232
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 6 cut(s) 303, 331, 343, 384, 749, 752
BccI CCATC 4 cut(s) 222, 230, 277, 394
BceAI ACGGC 1 cut(s) 43
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 3 cut(s) 68, 139, 230
BcoDI GTCTC 1 cut(s) 718
BfaI CTAG 1 cut(s) 763
BfmI CTRYAG 1 cut(s) 317
BfoI RGCGCY 2 cut(s) 317, 378
BglI GCCNNNNNGGC 1 cut(s) 27
BisI GCNGC 7 cut(s) 317, 320, 332, 363, 373, 738, 741
BlsI GCNGC 7 cut(s) 318, 321, 333, 364, 374, 739, 742
Bme1390I CCNGG 3 cut(s) 68, 139, 230
Bme18I GGWCC 2 cut(s) 210, 232
BmgT120I GGNCC 2 cut(s) 210, 232
BmiI GGNNCC 2 cut(s) 212, 233
BmrFI CCNGG 3 cut(s) 68, 139, 230
BmsI GCATC 2 cut(s) 78, 502
BpmI CTGGAG 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 713
BpuMI CCSGG 3 cut(s) 68, 139, 230
Bsa29I ATCGAT 2 cut(s) 444, 639
BsaJI CCNNGG 1 cut(s) 547
BsaWI WCCGGW 2 cut(s) 198, 207
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 138, 228
Bse118I RCCGGY 2 cut(s) 365, 377
Bse1I ACTGG 3 cut(s) 235, 241, 247
BseCI ATCGAT 2 cut(s) 444, 639
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 3 cut(s) 396, 542, 580
BseLI CCNNNNNNNGG 3 cut(s) 137, 138, 228
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 3 cut(s) 235, 241, 247
BseXI GCAGC 6 cut(s) 303, 331, 343, 384, 749, 752
BsgI GTGCAG 1 cut(s) 756
BshVI ATCGAT 2 cut(s) 444, 639
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 7 cut(s) 68, 138, 199, 208, 229, 366, 378
BslFI GGGAC 2 cut(s) 196, 245
BslI CCNNNNNNNGG 3 cut(s) 137, 138, 228
BsmAI GTCTC 1 cut(s) 718
BsmFI GGGAC 2 cut(s) 196, 245
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 4 cut(s) 48, 92, 537, 622
BspACI CCGC 2 cut(s) 19, 363
BspCNI CTCAG 1 cut(s) 289
BspDI ATCGAT 2 cut(s) 444, 639
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 2 cut(s) 212, 233
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 2 cut(s) 43, 87
BsrFI RCCGGY 2 cut(s) 365, 377
BsrI ACTGG 3 cut(s) 235, 241, 247
BssAI RCCGGY 2 cut(s) 365, 377
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 4 cut(s) 48, 92, 537, 622
BssSI CACGAG 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 547
Bst2BI CACGAG 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 183, 745
BstDEI CTNAG 3 cut(s) 276, 473, 645
BstF5I GGATG 3 cut(s) 396, 542, 580
BstH2I RGCGCY 2 cut(s) 317, 378
BstHHI GCGC 2 cut(s) 316, 377
BstKTI GATC 4 cut(s) 51, 95, 540, 625
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 4 cut(s) 48, 92, 537, 622
BstMWI GCNNNNNNNGC 3 cut(s) 27, 328, 674
BstNSI RCATGY 2 cut(s) 713, 747
BstSCI CCNGG 3 cut(s) 66, 137, 228
BstSFI CTRYAG 1 cut(s) 317
BstV1I GCAGC 6 cut(s) 303, 331, 343, 384, 749, 752
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
Bsu15I ATCGAT 2 cut(s) 444, 639
BsuTUI ATCGAT 2 cut(s) 444, 639
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 3 cut(s) 396, 542, 580
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 2 cut(s) 183, 745
CciI TCATGA 1 cut(s) 583
CfoI GCGC 2 cut(s) 316, 377
Cfr10I RCCGGY 2 cut(s) 365, 377
Cfr13I GGNCC 2 cut(s) 210, 232
ClaI ATCGAT 2 cut(s) 444, 639
Csp6I GTAC 5 cut(s) 202, 244, 250, 337, 687
CviAII CATG 5 cut(s) 115, 145, 584, 710, 744
CviJI RGCY 8 cut(s) 122, 185, 196, 322, 521, 653, 677, 762
CviKI_1 RGCY 8 cut(s) 122, 185, 196, 322, 521, 653, 677, 762
CviQI GTAC 5 cut(s) 202, 244, 250, 337, 687
DdeI CTNAG 3 cut(s) 276, 473, 645
DpnI GATC 4 cut(s) 50, 94, 539, 624
DpnII GATC 4 cut(s) 48, 92, 537, 622
DraIII CACNNNGTG 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 210, 232
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 74, 733
EcoICRI GAGCTC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 5 cut(s) 118, 148, 587, 713, 747
FaqI GGGAC 2 cut(s) 196, 245
FatI CATG 5 cut(s) 114, 144, 583, 709, 743
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 7 cut(s) 317, 320, 332, 363, 373, 738, 741
FokI GGATG 3 cut(s) 403, 529, 587
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 7 cut(s) 317, 320, 332, 363, 373, 738, 741
FspBI CTAG 1 cut(s) 763
GlaI GCGC 2 cut(s) 315, 376
GluI GCNGC 7 cut(s) 317, 320, 332, 363, 373, 738, 741
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 2 cut(s) 317, 378
HapII CCGG 7 cut(s) 68, 138, 199, 208, 229, 366, 378
HhaI GCGC 2 cut(s) 316, 377
Hin1II CATG 5 cut(s) 118, 148, 587, 713, 747
Hin6I GCGC 2 cut(s) 314, 375
HinP1I GCGC 2 cut(s) 314, 375
HinfI GANTC 7 cut(s) 61, 107, 150, 292, 641, 659, 671
HpaII CCGG 7 cut(s) 68, 138, 199, 208, 229, 366, 378
HphI GGTGA 4 cut(s) 8, 56, 127, 249
Hpy166II GTNNAC 1 cut(s) 439
Hpy188III TCNNGA 4 cut(s) 7, 52, 584, 730
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 3 cut(s) 196, 270, 688
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 144, 283, 319, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 328, 674
HpyF3I CTNAG 3 cut(s) 276, 473, 645
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 5 cut(s) 118, 148, 587, 713, 747
HspAI GCGC 2 cut(s) 314, 375
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 4 cut(s) 48, 92, 537, 622
LmnI GCTCC 2 cut(s) 70, 201
Lsp1109I GCAGC 6 cut(s) 303, 331, 343, 384, 749, 752
LweI GCATC 2 cut(s) 78, 502
MaeI CTAG 1 cut(s) 763
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 133
MalI GATC 4 cut(s) 50, 94, 539, 624
MboI GATC 4 cut(s) 48, 92, 537, 622
MboII GAAGA 3 cut(s) 58, 92, 264
MfeI CAATTG 2 cut(s) 161, 612
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 5 cut(s) 161, 253, 284, 532, 612
MlyI GAGTC 2 cut(s) 55, 680
MmeI TCCRAC 2 cut(s) 135, 196
MnlI CCTC 6 cut(s) 32, 76, 304, 480, 591, 737
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 2 cut(s) 262, 588
MspI CCGG 7 cut(s) 68, 138, 199, 208, 229, 366, 378
MspR9I CCNGG 3 cut(s) 68, 139, 230
MunI CAATTG 2 cut(s) 161, 612
MwoI GCNNNNNNNGC 3 cut(s) 27, 328, 674
NciI CCSGG 3 cut(s) 68, 139, 230
NdeII GATC 4 cut(s) 48, 92, 537, 622
NlaIII CATG 5 cut(s) 118, 148, 587, 713, 747
NlaIV GGNNCC 2 cut(s) 212, 233
NmeAIII GCCGAG 1 cut(s) 694
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 2 cut(s) 713, 747
OliI CACNNNNGTG 1 cut(s) 262
PaeI GCATGC 1 cut(s) 747
PagI TCATGA 1 cut(s) 583
PciI ACATGT 1 cut(s) 709
PcsI WCGNNNNNNNCGW 1 cut(s) 401
PfeI GAWTC 5 cut(s) 107, 150, 292, 641, 659
PkrI GCNGC 7 cut(s) 318, 321, 333, 364, 374, 739, 742
PleI GAGTC 2 cut(s) 55, 679
PpsI GAGTC 2 cut(s) 55, 679
PscI ACATGT 1 cut(s) 709
PshBI ATTAAT 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 212, 233
PspPI GGNCC 2 cut(s) 210, 232
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 5 cut(s) 203, 245, 251, 338, 688
RsaNI GTAC 5 cut(s) 202, 244, 250, 337, 687
RseI CAYNNNNRTG 2 cut(s) 262, 588
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 7 cut(s) 317, 320, 332, 363, 373, 738, 741
Sau3AI GATC 4 cut(s) 48, 92, 537, 622
Sau96I GGNCC 2 cut(s) 210, 232
SchI GAGTC 2 cut(s) 55, 680
ScrFI CCNGG 3 cut(s) 68, 139, 230
SduI GDGCHC 1 cut(s) 198
SetI ASST 7 cut(s) 198, 207, 262, 324, 472, 729, 764
SfaNI GCATC 2 cut(s) 78, 502
SfcI CTRYAG 1 cut(s) 317
SgrAI CRCCGGYG 1 cut(s) 377
SinI GGWCC 2 cut(s) 210, 232
SmiMI CAYNNNNRTG 2 cut(s) 262, 588
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SphI GCATGC 1 cut(s) 747
Sse9I AATT 5 cut(s) 161, 253, 284, 532, 612
SsiI CCGC 2 cut(s) 19, 363
SspMI CTAG 1 cut(s) 763
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 66, 137, 228
StyI CCWWGG 1 cut(s) 547
TaiI ACGT 1 cut(s) 207
TaqI TCGA 4 cut(s) 189, 444, 639, 662
TasI AATT 5 cut(s) 161, 253, 284, 532, 612
TatI WGTACW 1 cut(s) 249
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 5 cut(s) 107, 150, 292, 641, 659
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 6 cut(s) 316, 319, 331, 372, 737, 740
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 210, 232
VspI ATTAAT 1 cut(s) 429
XceI RCATGY 2 cut(s) 713, 747
XspI CTAG 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.