Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Forward (+)

66455050 .. 66456307

Gene Structure 1258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTTGCTTCTCATACCCACATTCTTCTTCACCATCACCATCTTCCTCACATCCTTCTTCTTCCTCATTCTTCTTCTCCATCATTACCGCCACCTTTGCAATATTCATCTCTCCAACTCATTTCTAAGCTTTCGATGGCTACATTTGCCACATTGGTTTGAACCACCACTGCAACGGAGCCGACGACACTTACTTGGTTCAGACAACATAATGACCCTTAAGGGTGCCACCAGCCAGGCCTGTGCTGCATGCAAATACCAAAGAAGAAAGTGCACGCCAGAGTGCCCTTTAGCTCCTTATTTCCCTCCAGACCAACCAAAAATGTTTCAAAATGCACACAAGCTTTTTGGGGTCTGCAACATCTTGAAGATACTTAAAAGTGTCGACCCTTGTCTCAAGTTTGAGGCCATGAAGTCCATCATCTACCAAGCCAACATTCGAGACAAGTTTCCGGTCTACGGCTGTTGGGAGGTGATCTGGCAATTACAGTACCAGATTATGGTTGCAGAGCAGGAGCTTCAAAATGTTCATAAACAGCTTGCATTGTACAGACAACATCACTACCACCAGCAGCAGCAGATTTCAGCTATGCCAGATTATGTGACCTCACAATTAGAATTGGGCATGGCACCACCAAATAATAATAATAATACCATCTCACTTTTACATCATAGTACTCCACAATCTTATGATAACAATAATACTGCCATACCTCATGCTTTGCCTGTAACACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCCTTACTCTCATCGAAGCGACAATGCTTACACTTCTGCTTATGACATTGACTCCAAGGAGAATATTACCGGGGAGAATGTTTTGTGGGAGCAAAATCCTTTCACTAACAACAACAGCAGTATCAATGAGAACAGCGATAATGCTGAGACAGTTCAATCCCAGTTCGGAGTTTCGCAGACACTAGCTATTGAATCAGAAGATGTTCAAGATTACGATGAGCTGCACCCATTTTTCGATACCATAGATGATAGACAGTCATACATTGATTCCAAAGAGGCTTATGATTCAAGCAGTTCAGAAGAATCTTTTAAGGACACAACCCAATTATCGATGGATCATGCGGCGGAGAACACATTGAAGAGTGCTGCAGCATGCTTCAGTCTTACCAGTGTCAAGTTATCAGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

392

Amino Acids

45.1

Weight (kDa)

5.8

Isoelectric Point (pI)

67.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	80 - 177	4.8e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 628
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	2 cut(s)	384, 456
AciI	CCGC	3 cut(s)	88, 1106, 1109
AclWI	GGATC	1 cut(s)	1107
AcuI	CTGAAG	1 cut(s)	1126
AfaI	GTAC	3 cut(s)	491, 548, 676
AfiI	CCNNNNNNNGG	2 cut(s)	458, 499
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	9 cut(s)	161, 329, 367, 521, 920, 956, 971, 1053, 1123
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	9 cut(s)	129, 293, 343, 517, 538, 587, 950, 985, 1173
AluI	AGCT	9 cut(s)	129, 293, 343, 517, 538, 587, 950, 985, 1173
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	398, 435, 905
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	1107
AoxI	GGCC	2 cut(s)	237, 405
ApaLI	GTGCAC	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	966
AsuC2I	CCSGG	1 cut(s)	835
AsuHPI	GGTGA	3 cut(s)	22, 28, 484
BaeGI	GKGCMC	2 cut(s)	275, 287
BaeI	ACNNNNGTAYC	2 cut(s)	868, 901
BanI	GGYRCC	2 cut(s)	224, 628
Bbv12I	GWGCWC	1 cut(s)	275
BccI	CCATC	7 cut(s)	41, 47, 87, 129, 425, 662, 1090
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	835
BcoDI	GTCTC	3 cut(s)	398, 435, 905
BfaI	CTAG	2 cut(s)	947, 1174
BfmI	CTRYAG	1 cut(s)	1131
BfrI	CTTAAG	1 cut(s)	218
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	2 cut(s)	236, 835
BmiI	GGNNCC	3 cut(s)	179, 226, 630
BmrFI	CCNGG	2 cut(s)	236, 835
BmrI	ACTGGG	1 cut(s)	919
BmuI	ACTGGG	1 cut(s)	919
BoxI	GACNNNNGTC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	835
Bsa29I	ATCGAT	1 cut(s)	1094
BsaJI	CCNNGG	2 cut(s)	819, 834
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 499
Bse1I	ACTGG	2 cut(s)	925, 1152
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	1094
BseDI	CCNNGG	2 cut(s)	819, 834
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	458, 499
BseMII	CTCAG	1 cut(s)	900
BseNI	ACTGG	2 cut(s)	925, 1152
BseSI	GKGCMC	2 cut(s)	275, 287
BsgI	GTGCAG	1 cut(s)	971
BshFI	GGCC	2 cut(s)	239, 407
BshNI	GGYRCC	2 cut(s)	224, 628
BshVI	ATCGAT	1 cut(s)	1094
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	452, 834
BslI	CCNNNNNNNGG	2 cut(s)	458, 499
BsmAI	GTCTC	3 cut(s)	398, 435, 905
BsnI	GGCC	2 cut(s)	239, 407
Bsp1286I	GDGCHC	2 cut(s)	275, 287
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	474, 1099
BspACI	CCGC	3 cut(s)	88, 1106, 1109
BspANI	GGCC	2 cut(s)	239, 407
BspCNI	CTCAG	1 cut(s)	901
BspDI	ATCGAT	1 cut(s)	1094
BspLI	GGNNCC	3 cut(s)	179, 226, 630
BspMAI	CTGCAG	1 cut(s)	1135
BspPI	GGATC	1 cut(s)	1107
BspT107I	GGYRCC	2 cut(s)	224, 628
BspTI	CTTAAG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	925, 1152
BssECI	CCNNGG	2 cut(s)	819, 834
BssMI	GATC	2 cut(s)	474, 1099
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	489, 916, 1020
Bst6I	CTCTTC	1 cut(s)	1118
BstAFI	CTTAAG	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	4 cut(s)	250, 275, 540, 1138
BstDEI	CTNAG	2 cut(s)	125, 909
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	477, 1102
BstMAI	GTCTC	3 cut(s)	398, 435, 905
BstMBI	GATC	2 cut(s)	474, 1099
BstMWI	GCNNNNNNNGC	8 cut(s)	96, 145, 245, 751, 754, 757, 760, 763
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	252, 1140
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	234, 833
BstSFI	CTRYAG	1 cut(s)	1131
BstSLI	GKGCMC	2 cut(s)	275, 287
Bsu15I	ATCGAT	1 cut(s)	1094
BsuRI	GGCC	2 cut(s)	239, 407
BsuTUI	ATCGAT	1 cut(s)	1094
BtsCI	GGATG	1 cut(s)	50
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	167, 1159
Cac8I	GCNNGC	4 cut(s)	250, 275, 540, 1138
ClaI	ATCGAT	1 cut(s)	1094
Csp6I	GTAC	3 cut(s)	490, 547, 675
CviAII	CATG	6 cut(s)	249, 409, 625, 716, 1103, 1137
CviQI	GTAC	3 cut(s)	490, 547, 675
DdeI	CTNAG	2 cut(s)	125, 909
DpnI	GATC	2 cut(s)	476, 1101
DpnII	GATC	2 cut(s)	474, 1099
Eam1104I	CTCTTC	1 cut(s)	1118
EarI	CTCTTC	1 cut(s)	1118
EciI	GGCGGA	1 cut(s)	1124
Eco130I	CCWWGG	1 cut(s)	819
Eco147I	AGGCCT	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	1126
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	6 cut(s)	252, 412, 628, 719, 1106, 1140
FatI	CATG	6 cut(s)	248, 408, 624, 715, 1102, 1136
FblI	GTMKAC	2 cut(s)	384, 456
FokI	GGATG	1 cut(s)	37
FspBI	CTAG	2 cut(s)	947, 1174
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	239, 407
HapII	CCGG	2 cut(s)	452, 834
Hin1II	CATG	6 cut(s)	252, 412, 628, 719, 1106, 1140
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	127, 341
HinfI	GANTC	5 cut(s)	815, 956, 1031, 1049, 1067
HpaII	CCGG	2 cut(s)	452, 834
HphI	GGTGA	3 cut(s)	22, 28, 484
Hpy166II	GTNNAC	3 cut(s)	273, 385, 457
Hpy188I	TCNGA	4 cut(s)	202, 932, 961, 1063
Hpy188III	TCNNGA	4 cut(s)	308, 364, 440, 971
Hpy8I	GTNNAC	3 cut(s)	273, 385, 457
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	489, 916, 1020
HpyF10VI	GCNNNNNNNGC	8 cut(s)	96, 145, 245, 751, 754, 757, 760, 763
HpyF3I	CTNAG	2 cut(s)	125, 909
Hsp92II	CATG	6 cut(s)	252, 412, 628, 719, 1106, 1140
Kzo9I	GATC	2 cut(s)	474, 1099
LmnI	GCTCC	4 cut(s)	177, 298, 514, 853
MaeI	CTAG	2 cut(s)	947, 1174
MaeIII	GTNAC	2 cut(s)	601, 727
MalI	GATC	2 cut(s)	476, 1101
MboI	GATC	2 cut(s)	474, 1099
MhlI	GDGCHC	2 cut(s)	275, 287
MluCI	AATT	4 cut(s)	482, 611, 617, 1088
MlyI	GAGTC	1 cut(s)	809
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	8 cut(s)	56, 74, 315, 397, 463, 616, 723, 1033
MroXI	GAANNNNTTC	1 cut(s)	966
MseI	TTAA	3 cut(s)	219, 375, 1074
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	2 cut(s)	452, 834
MspR9I	CCNGG	2 cut(s)	236, 835
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	8 cut(s)	96, 145, 245, 751, 754, 757, 760, 763
NciI	CCSGG	1 cut(s)	835
NdeII	GATC	2 cut(s)	474, 1099
NlaIII	CATG	6 cut(s)	252, 412, 628, 719, 1106, 1140
NlaIV	GGNNCC	3 cut(s)	179, 226, 630
NmuCI	GTSAC	1 cut(s)	601
NspI	RCATGY	2 cut(s)	252, 1140
PaeI	GCATGC	2 cut(s)	252, 1140
PceI	AGGCCT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	966
PfeI	GAWTC	4 cut(s)	956, 1031, 1049, 1067
PflMI	CCANNNNNTGG	1 cut(s)	499
PleI	GAGTC	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	809
PshAI	GACNNNNGTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	179, 226, 630
PstI	CTGCAG	1 cut(s)	1135
RsaI	GTAC	3 cut(s)	491, 548, 676
RsaNI	GTAC	3 cut(s)	490, 547, 675
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	219, 375, 1074
Sau3AI	GATC	2 cut(s)	474, 1099
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	2 cut(s)	236, 835
SduI	GDGCHC	2 cut(s)	275, 287
SfcI	CTRYAG	1 cut(s)	1131
SmlI	CTYRAG	2 cut(s)	218, 395
SmoI	CTYRAG	2 cut(s)	218, 395
SphI	GCATGC	2 cut(s)	252, 1140
Sse9I	AATT	4 cut(s)	482, 611, 617, 1088
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	88, 1106, 1109
SspI	AATATT	2 cut(s)	103, 829
SspMI	CTAG	2 cut(s)	947, 1174
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	234, 833
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	3 cut(s)	489, 916, 1020
TaqI	TCGA	6 cut(s)	133, 384, 439, 778, 999, 1094
TasI	AATT	4 cut(s)	482, 611, 617, 1088
TatI	WGTACW	2 cut(s)	546, 674
TauI	GCSGC	1 cut(s)	1109
TfiI	GAWTC	4 cut(s)	956, 1031, 1049, 1067
Tru1I	TTAA	3 cut(s)	219, 375, 1074
Tru9I	TTAA	3 cut(s)	219, 375, 1074
TscAI	CASTG	2 cut(s)	174, 1159
TseFI	GTSAC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	95, 425, 518
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	174, 1159
Van91I	CCANNNNNTGG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	218
VneI	GTGCAC	1 cut(s)	271
XceI	RCATGY	2 cut(s)	252, 1140
XmiI	GTMKAC	2 cut(s)	384, 456
XmnI	GAANNNNTTC	1 cut(s)	966
XspI	CTAG	2 cut(s)	947, 1174
ZrmI	AGTACT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.