Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Forward (+)

25292930 .. 25294403

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G273200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGATCATTAAAACCATCGATGAATGTACATTCTACCCTACAATGACGATCAAAGGAGGCACAAGCCAAGCCTGTGCTGCGTGCAAATACCAAAGACGACGGTGCGCTAAGGACTGCCCTCTCTCTCCCCACTTCCCGGCCGATCAGCCCAAGATGTTCCAAAACGCACACCGTTTGTACGGCGTCTCCAACATAATGAAGATCCGAAAGCAAGTTCATCCCGAGCAACAAAACGAGGCGATGAGATCAATCATATACGAATCCAACATGCGTGCCAAATTTCCAGTCACTGGCTGCATGGGCATCATAAACCAATTGAACTTCCAATTACAACAAGCCATCGAGGAGCTTCGTTACGTCAGAACACATCTCGTAATATGCAAGGACCAATGCCAATATCGAATCCCTCCCTCTCCCCCACATTACTCATCATGTCCTTCCTCGCAATTGCAACTAGGAATGCCTTCCAACAACGACGCCTCCGCCGCTCTGACAATTTATCAGCACCAATATCAGTATGCTTCTGCTGGTGGCGGTGCCGCAGGGATGTCCTTTGTGGCTAATGAGTATCTTGCAAATGGACTTAGTGCGGTTTATATTGACGACAATGATGTGGTAAAACCTCTTAGGGTTCAACATCCTTATTATAGCGATAACAATGTTGATCAACTTATGGCTGTTCAGTCTAATTTGGTTTCCTCACAAGCCTTTCCTATCCACCAAGAAATGGATGTTCCTCACGATTACGATGACATTCCATTTGATACAATTGCTGATGATCGGCAATCGTATATTGAATCCAAAGACGCCTGTGAGTCAAGTGCTGAATCATCGTTCAAGGGTACCACGCAATCTATTGAGCATGTGTCACAGAATGATCTCAAGAGTGCGGCAGCATGCTTCAGCCTAACAAGTGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

308

Amino Acids

34.33

Weight (kDa)

6.05

Isoelectric Point (pI)

64.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	842
AccB1I	GGYRCC	2 cut(s)	536, 842
AccB7I	CCANNNNNTGG	2 cut(s)	290, 727
AccBSI	CCGCTC	1 cut(s)	488
AciI	CCGC	6 cut(s)	483, 486, 534, 540, 590, 890
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	886
AcyI	GRCGYC	3 cut(s)	183, 477, 807
AfaI	GTAC	3 cut(s)	28, 179, 844
AfiI	CCNNNNNNNGG	3 cut(s)	136, 290, 727
AgsI	TTSAA	4 cut(s)	319, 635, 797, 838
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	77, 294, 893
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	4 cut(s)	270, 302, 743, 775
Asp700I	GAANNNNTTC	1 cut(s)	463
Asp718I	GGTACC	1 cut(s)	842
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	385
AsuC2I	CCSGG	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	385
BanI	GGYRCC	2 cut(s)	536, 842
BbvI	GCAGC	3 cut(s)	64, 281, 905
BccI	CCATC	2 cut(s)	23, 347
BceAI	ACGGC	1 cut(s)	196
BclI	TGATCA	2 cut(s)	3, 664
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	455
BisI	GCNGC	6 cut(s)	78, 295, 486, 540, 891, 894
BlsI	GCNGC	6 cut(s)	79, 296, 487, 541, 892, 895
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	2 cut(s)	538, 844
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	18
BsaHI	GRCGYC	3 cut(s)	183, 477, 807
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 464, 494
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 290, 727
Bse1I	ACTGG	2 cut(s)	284, 295
BseCI	ATCGAT	1 cut(s)	18
BseGI	GGATG	4 cut(s)	217, 552, 637, 736
BseLI	CCNNNNNNNGG	3 cut(s)	136, 290, 727
BseNI	ACTGG	2 cut(s)	284, 295
BseRI	GAGGAG	1 cut(s)	359
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	64, 281, 905
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	2 cut(s)	536, 842
BshVI	ATCGAT	1 cut(s)	18
BsiEI	CGRYCG	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	3 cut(s)	136, 290, 727
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	221
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	8 cut(s)	3, 48, 142, 201, 245, 664, 778, 877
BspACI	CCGC	6 cut(s)	483, 486, 534, 540, 590, 890
BspANI	GGCC	1 cut(s)	140
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	538, 844
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	2 cut(s)	536, 842
BsrBI	CCGCTC	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	284, 295
BssMI	GATC	8 cut(s)	3, 48, 142, 201, 245, 664, 778, 877
BssNI	GRCGYC	3 cut(s)	183, 477, 807
Bst4CI	ACNGT	2 cut(s)	102, 173
BstACI	GRCGYC	3 cut(s)	183, 477, 807
BstAUI	TGTACA	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	82, 273, 898
BstDEI	CTNAG	3 cut(s)	108, 584, 626
BstF5I	GGATG	4 cut(s)	217, 552, 637, 736
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	8 cut(s)	6, 51, 145, 204, 248, 667, 781, 880
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	8 cut(s)	3, 48, 142, 201, 245, 664, 778, 877
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 300, 485
BstNSI	RCATGY	3 cut(s)	271, 866, 900
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	64, 281, 905
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZI	CGGCCG	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	4 cut(s)	217, 552, 637, 736
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	3 cut(s)	82, 273, 898
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	18
CseI	GACGC	3 cut(s)	172, 485, 815
Csp6I	GTAC	3 cut(s)	27, 178, 843
CviAII	CATG	5 cut(s)	268, 298, 432, 863, 897
CviQI	GTAC	3 cut(s)	27, 178, 843
DdeI	CTNAG	3 cut(s)	108, 584, 626
DpnI	GATC	8 cut(s)	5, 50, 144, 203, 247, 666, 780, 879
DpnII	GATC	8 cut(s)	3, 48, 142, 201, 245, 664, 778, 877
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	472
EclXI	CGGCCG	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	385
Eco52I	CGGCCG	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	886
Eco88I	CYCGRG	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	5 cut(s)	271, 301, 435, 866, 900
FatI	CATG	5 cut(s)	267, 297, 431, 862, 896
FbaI	TGATCA	2 cut(s)	3, 664
Fnu4HI	GCNGC	6 cut(s)	78, 295, 486, 540, 891, 894
FokI	GGATG	4 cut(s)	204, 559, 624, 743
Fsp4HI	GCNGC	6 cut(s)	78, 295, 486, 540, 891, 894
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	6 cut(s)	78, 295, 486, 540, 891, 894
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	3 cut(s)	172, 485, 815
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	3 cut(s)	183, 477, 807
Hin1II	CATG	5 cut(s)	271, 301, 435, 866, 900
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	5 cut(s)	260, 402, 797, 815, 827
HpaII	CCGG	1 cut(s)	137
Hpy188I	TCNGA	3 cut(s)	206, 362, 492
Hpy188III	TCNNGA	3 cut(s)	221, 740, 883
Hpy99I	CGWCG	2 cut(s)	102, 479
HpyAV	CCTTC	2 cut(s)	447, 474
HpyCH4III	ACNGT	2 cut(s)	102, 173
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	5 cut(s)	84, 297, 381, 451, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 300, 485
HpyF3I	CTNAG	3 cut(s)	108, 584, 626
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	3 cut(s)	183, 477, 807
Hsp92II	CATG	5 cut(s)	271, 301, 435, 866, 900
HspAI	GCGC	1 cut(s)	105
KpnI	GGTACC	1 cut(s)	846
Ksp22I	TGATCA	2 cut(s)	3, 664
Kzo9I	GATC	8 cut(s)	3, 48, 142, 201, 245, 664, 778, 877
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	7 cut(s)	85, 150, 276, 297, 513, 528, 823
Lsp1109I	GCAGC	3 cut(s)	64, 281, 905
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	286, 353, 867
MalI	GATC	8 cut(s)	5, 50, 144, 203, 247, 666, 780, 879
MbiI	CCGCTC	1 cut(s)	488
MboI	GATC	8 cut(s)	3, 48, 142, 201, 245, 664, 778, 877
MboII	GAAGA	1 cut(s)	211
MfeI	CAATTG	3 cut(s)	314, 446, 768
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	7 cut(s)	278, 314, 326, 446, 495, 688, 768
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	3 cut(s)	213, 288, 492
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	1 cut(s)	9
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	3 cut(s)	314, 446, 768
Mva1269I	GAATGC	1 cut(s)	465
MwoI	GCNNNNNNNGC	3 cut(s)	77, 300, 485
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	8 cut(s)	3, 48, 142, 201, 245, 664, 778, 877
NlaIII	CATG	5 cut(s)	271, 301, 435, 866, 900
NlaIV	GGNNCC	2 cut(s)	538, 844
NmuCI	GTSAC	2 cut(s)	286, 867
NspI	RCATGY	3 cut(s)	271, 866, 900
PaeI	GCATGC	1 cut(s)	900
PctI	GAATGC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	4 cut(s)	260, 402, 797, 827
PflMI	CCANNNNNTGG	2 cut(s)	290, 727
PkrI	GCNGC	6 cut(s)	79, 296, 487, 541, 892, 895
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
PspN4I	GGNNCC	2 cut(s)	538, 844
PspPI	GGNCC	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	3 cut(s)	28, 179, 844
RsaNI	GTAC	3 cut(s)	27, 178, 843
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	6 cut(s)	78, 295, 486, 540, 891, 894
Sau3AI	GATC	8 cut(s)	3, 48, 142, 201, 245, 664, 778, 877
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	3 cut(s)	351, 360, 625
SfaNI	GCATC	1 cut(s)	312
SinI	GGWCC	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SphI	GCATGC	1 cut(s)	900
Sse9I	AATT	7 cut(s)	278, 314, 326, 446, 495, 688, 768
SsiI	CCGC	6 cut(s)	483, 486, 534, 540, 590, 890
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	102, 173
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	3 cut(s)	18, 342, 400
TasI	AATT	7 cut(s)	278, 314, 326, 446, 495, 688, 768
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	3 cut(s)	488, 542, 893
TfiI	GAWTC	4 cut(s)	260, 402, 797, 827
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	286, 867
TseI	GCWGC	3 cut(s)	77, 294, 893
Tsp45I	GTSAC	2 cut(s)	286, 867
TspDTI	ATGAA	3 cut(s)	36, 206, 212
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	2 cut(s)	290, 727
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	3 cut(s)	271, 866, 900
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.