MD17G1046200.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005135
Physical Location & Seq
Reverse (-)
3386162 .. 3387799
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1046200.v1.1.491

Sequence Viewer

Length: 930 bp
ATGATCATCAAAAAAGTTGATGAATTTACATTCTACCCTGCAATGACGATAAAAGGAGGCACAAGCCAAGCCTGTGCTGCGTGCAAATACCATAGACGAAAGTGCGCTAAGGACTGCGCTCTTGCTCCACACTTCCCGGCAGATCAACCGATGATGTTTCAAAACGCCCACCGATTGTATGGCGTTTCGAACATAATGAAGATTCTAAAGAAAGTTCATCCAGAGCAAGAGGAGGAGGCTATGACATCGATCATATACGAGTCCAATATGCGTGCCAAATTTTCAGTCACCGGGTGTATGGGCATCATAAACCAATTGAATTTCCAATTACAGCAAGCCCTAGAAGAGCTTCGATATGTGAGGACAAATCTTGCAATTTGCAAGGACCAATGTCAATATCGACTACCTTCTTCCTCACCGCACTACTCTTCTCCTTCACCGCAGTTGCAGCTAGGTATACCTACAAACACCGACGCGGCGACTCTGACACTTTATCAACAACATCAATATCCGTATCAATATGCTTCTGGCGCTGCTGGTGCCAGTGGTGGAATGTCCTGGGTGGGTAATGAGTATCTTGCAAATGGACTTAATGGGGTTTATATTGACGACAATGATAATATGGTTAAACCTCTTAGGGTTCAACATCCCTACTATAACGATAACAATGTCGAACAACTTATGGCTGTTCAGTCTAGTTTGGTTTCTTCACAAGCCTTTCCTGTTCACCAAGAAATGGACGTTCCTCATGACTATGATGACATTCCATTTGATACAATTGCTGATGATCGACAATCTTATATCGAATCTAAAGAAGCCTGTGAGTCTAGTGCTGAATCATCGTTCAAGGGTACCACGCAATCGATCGAACATGTCTCAAATGATCTCAAGAGTGCGGCAGCATGCTTCAGTCTAACGAGTGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

310

Amino Acids

34.52

Weight (kDa)

5.67

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 24 - 120 7.1e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 851
AccB1I GGYRCC 2 cut(s) 539, 851
AccB7I CCANNNNNTGG 1 cut(s) 736
AccI GTMKAC 1 cut(s) 457
AccII CGCG 1 cut(s) 476
AciI CCGC 4 cut(s) 419, 440, 476, 896
AcsI RAATTY 3 cut(s) 23, 278, 319
AcuI CTGAAG 1 cut(s) 892
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 1 cut(s) 853
AfiI CCNNNNNNNGG 1 cut(s) 736
AflIII ACRYGT 1 cut(s) 871
AgsI TTSAA 4 cut(s) 161, 319, 644, 847
AjnI CCWGG 1 cut(s) 557
AluBI AGCT 2 cut(s) 349, 451
AluI AGCT 2 cut(s) 349, 451
Alw26I GTCTC 1 cut(s) 880
ApeKI GCWGC 4 cut(s) 77, 448, 533, 899
ApoI RAATTY 3 cut(s) 23, 278, 319
ArsI GACNNNNNNTTYG 4 cut(s) 270, 302, 752, 784
Asp700I GAANNNNTTC 1 cut(s) 348
Asp718I GGTACC 1 cut(s) 851
AspLEI GCGC 3 cut(s) 107, 119, 533
AspS9I GGNCC 1 cut(s) 385
AsuC2I CCSGG 2 cut(s) 137, 292
AsuHPI GGTGA 4 cut(s) 280, 408, 429, 719
AsuII TTCGAA 1 cut(s) 188
AvaII GGWCC 1 cut(s) 385
BanI GGYRCC 2 cut(s) 539, 851
BbvI GCAGC 4 cut(s) 64, 460, 520, 911
BciT130I CCWGG 1 cut(s) 559
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 137, 292
BcoDI GTCTC 1 cut(s) 880
BfaI CTAG 4 cut(s) 341, 452, 696, 828
BfoI RGCGCY 1 cut(s) 534
BisI GCNGC 6 cut(s) 78, 449, 477, 534, 897, 900
BlsI GCNGC 6 cut(s) 79, 450, 478, 535, 898, 901
Bme1390I CCNGG 3 cut(s) 137, 292, 559
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 2 cut(s) 541, 853
BmrFI CCNGG 3 cut(s) 137, 292, 559
BmsI GCATC 1 cut(s) 312
BoxI GACNNNNGTC 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 2 cut(s) 137, 292
Bsa29I ATCGAT 2 cut(s) 248, 863
BsaJI CCNNGG 1 cut(s) 558
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse1I ACTGG 1 cut(s) 543
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 559
BseCI ATCGAT 2 cut(s) 248, 863
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 2 cut(s) 217, 646
BseLI CCNNNNNNNGG 1 cut(s) 736
BseMI GCAATG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 2 cut(s) 245, 248
BseXI GCAGC 4 cut(s) 64, 460, 520, 911
Bsh1236I CGCG 1 cut(s) 476
Bsh1285I CGRYCG 1 cut(s) 867
BshNI GGYRCC 2 cut(s) 539, 851
BshVI ATCGAT 2 cut(s) 248, 863
BsiEI CGRYCG 1 cut(s) 867
BsiSI CCGG 2 cut(s) 137, 291
BslI CCNNNNNNNGG 1 cut(s) 736
BsmAI GTCTC 1 cut(s) 880
Bsp119I TTCGAA 1 cut(s) 188
Bsp143I GATC 6 cut(s) 3, 142, 249, 787, 864, 883
BspACI CCGC 4 cut(s) 419, 440, 476, 896
BspDI ATCGAT 2 cut(s) 248, 863
BspFNI CGCG 1 cut(s) 476
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 2 cut(s) 541, 853
BspQI GCTCTTC 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 188
BspT107I GGYRCC 2 cut(s) 539, 851
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 6 cut(s) 3, 142, 249, 787, 864, 883
BssNAI GTATAC 1 cut(s) 458
Bst1107I GTATAC 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 559
Bst6I CTCTTC 2 cut(s) 339, 433
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 4 cut(s) 82, 273, 336, 904
BstDEI CTNAG 2 cut(s) 108, 635
BstF5I GGATG 2 cut(s) 217, 646
BstFNI CGCG 1 cut(s) 476
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 3 cut(s) 107, 119, 533
BstKTI GATC 6 cut(s) 6, 145, 252, 790, 867, 886
BstMAI GTCTC 1 cut(s) 880
BstMBI GATC 6 cut(s) 3, 142, 249, 787, 864, 883
BstMCI CGRYCG 1 cut(s) 867
BstMWI GCNNNNNNNGC 4 cut(s) 77, 448, 530, 539
BstNI CCWGG 1 cut(s) 559
BstNSI RCATGY 2 cut(s) 875, 906
BstPAI GACNNNNGTC 1 cut(s) 390
BstSCI CCNGG 3 cut(s) 135, 290, 557
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 4 cut(s) 64, 460, 520, 911
BstZ17I GTATAC 1 cut(s) 458
Bsu15I ATCGAT 2 cut(s) 248, 863
BsuTUI ATCGAT 2 cut(s) 248, 863
BtsCI GGATG 2 cut(s) 217, 646
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 4 cut(s) 82, 273, 336, 904
CciI TCATGA 1 cut(s) 748
CfoI GCGC 3 cut(s) 107, 119, 533
Cfr13I GGNCC 1 cut(s) 385
ClaI ATCGAT 2 cut(s) 248, 863
CseI GACGC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 852
CviAII CATG 3 cut(s) 749, 872, 903
CviJI RGCY 9 cut(s) 66, 71, 239, 338, 349, 451, 686, 716, 818
CviKI_1 RGCY 9 cut(s) 66, 71, 239, 338, 349, 451, 686, 716, 818
CviQI GTAC 1 cut(s) 852
DdeI CTNAG 2 cut(s) 108, 635
DpnI GATC 6 cut(s) 5, 144, 251, 789, 866, 885
DpnII GATC 6 cut(s) 3, 142, 249, 787, 864, 883
DraIII CACNNNGTG 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 339, 433
EarI CTCTTC 2 cut(s) 339, 433
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 892
EcoRII CCWGG 1 cut(s) 557
FaeI CATG 3 cut(s) 752, 875, 906
FatI CATG 3 cut(s) 748, 871, 902
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 6 cut(s) 78, 449, 477, 534, 897, 900
FokI GGATG 2 cut(s) 204, 633
Fsp4HI GCNGC 6 cut(s) 78, 449, 477, 534, 897, 900
FspBI CTAG 4 cut(s) 341, 452, 696, 828
GlaI GCGC 3 cut(s) 106, 118, 532
GluI GCNGC 6 cut(s) 78, 449, 477, 534, 897, 900
HaeII RGCGCY 1 cut(s) 534
HapII CCGG 2 cut(s) 137, 291
HgaI GACGC 1 cut(s) 482
HhaI GCGC 3 cut(s) 107, 119, 533
Hin1II CATG 3 cut(s) 752, 875, 906
Hin6I GCGC 3 cut(s) 105, 117, 531
HinP1I GCGC 3 cut(s) 105, 117, 531
HinfI GANTC 6 cut(s) 202, 260, 481, 806, 824, 836
HpaII CCGG 2 cut(s) 137, 291
HphI GGTGA 4 cut(s) 280, 408, 429, 719
Hpy166II GTNNAC 2 cut(s) 458, 727
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 3 cut(s) 221, 749, 889
Hpy8I GTNNAC 2 cut(s) 458, 727
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 2 cut(s) 417, 444
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 6 cut(s) 41, 84, 374, 381, 448, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 448, 530, 539
HpyF3I CTNAG 2 cut(s) 108, 635
HpySE526I ACGT 1 cut(s) 741
Hsp92II CATG 3 cut(s) 752, 875, 906
HspAI GCGC 3 cut(s) 105, 117, 531
KpnI GGTACC 1 cut(s) 855
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 142, 249, 787, 864, 883
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 4 cut(s) 64, 460, 520, 911
LweI GCATC 1 cut(s) 312
MaeI CTAG 4 cut(s) 341, 452, 696, 828
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 1 cut(s) 286
MalI GATC 6 cut(s) 5, 144, 251, 789, 866, 885
MboI GATC 6 cut(s) 3, 142, 249, 787, 864, 883
MboII GAAGA 5 cut(s) 211, 356, 402, 420, 699
MfeI CAATTG 2 cut(s) 314, 777
MluCI AATT 7 cut(s) 23, 278, 314, 319, 326, 375, 777
MlyI GAGTC 3 cut(s) 269, 475, 833
MnlI CCTC 8 cut(s) 50, 223, 226, 229, 354, 424, 642, 756
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 2 cut(s) 591, 627
MslI CAYNNNNRTG 1 cut(s) 753
MspI CCGG 2 cut(s) 137, 291
MspR9I CCNGG 3 cut(s) 137, 292, 559
MunI CAATTG 2 cut(s) 314, 777
MvaI CCWGG 1 cut(s) 559
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 4 cut(s) 77, 448, 530, 539
NciI CCSGG 2 cut(s) 137, 292
NdeII GATC 6 cut(s) 3, 142, 249, 787, 864, 883
NlaIII CATG 3 cut(s) 752, 875, 906
NlaIV GGNNCC 2 cut(s) 541, 853
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 2 cut(s) 875, 906
NspV TTCGAA 1 cut(s) 188
PaeI GCATGC 1 cut(s) 906
PagI TCATGA 1 cut(s) 748
PciI ACATGT 1 cut(s) 871
PciSI GCTCTTC 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 3 cut(s) 202, 806, 836
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 6 cut(s) 79, 450, 478, 535, 898, 901
Ple19I CGATCG 1 cut(s) 867
PleI GAGTC 3 cut(s) 268, 475, 832
PpsI GAGTC 3 cut(s) 268, 475, 832
PscI ACATGT 1 cut(s) 871
PshAI GACNNNNGTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 557
PspGI CCWGG 1 cut(s) 557
PspN4I GGNNCC 2 cut(s) 541, 853
PspPI GGNCC 1 cut(s) 385
PvuI CGATCG 1 cut(s) 867
RsaI GTAC 1 cut(s) 853
RsaNI GTAC 1 cut(s) 852
RseI CAYNNNNRTG 1 cut(s) 753
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 591, 627
SatI GCNGC 6 cut(s) 78, 449, 477, 534, 897, 900
Sau3AI GATC 6 cut(s) 3, 142, 249, 787, 864, 883
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 3 cut(s) 269, 475, 833
ScrFI CCNGG 3 cut(s) 137, 292, 559
SetI ASST 7 cut(s) 351, 409, 453, 457, 463, 634, 744
SfaNI GCATC 1 cut(s) 312
SfuI TTCGAA 1 cut(s) 188
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SphI GCATGC 1 cut(s) 906
Sse9I AATT 7 cut(s) 23, 278, 314, 319, 326, 375, 777
SsiI CCGC 4 cut(s) 419, 440, 476, 896
SspMI CTAG 4 cut(s) 341, 452, 696, 828
StyD4I CCNGG 3 cut(s) 135, 290, 557
TaiI ACGT 1 cut(s) 744
TaqI TCGA 9 cut(s) 188, 248, 352, 400, 672, 790, 804, 863, 867
TasI AATT 7 cut(s) 23, 278, 314, 319, 326, 375, 777
TauI GCSGC 2 cut(s) 479, 899
TfiI GAWTC 3 cut(s) 202, 806, 836
Tru1I TTAA 2 cut(s) 591, 627
Tru9I TTAA 2 cut(s) 591, 627
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 4 cut(s) 77, 448, 533, 899
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 3 cut(s) 36, 206, 212
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 1 cut(s) 550
Van91I CCANNNNNTGG 1 cut(s) 736
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 3 cut(s) 23, 278, 319
XceI RCATGY 2 cut(s) 875, 906
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 4 cut(s) 341, 452, 696, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.