FvH4_6g49430

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005135
Physical Location & Seq
Forward (+)
37029633 .. 37031178
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49430.t1

Sequence Viewer

Length: 903 bp
ATGATCATCAAAACAGTCGATGAATGCGCGTATTTTCCGACCATGACGATCAAAGGAGGCACAAGCCAGGCCTGTGCTGCGTGCAAGTACCAGAGACGACGGTGCACCAAGGACTGCGAGCTCGCCCCTCATTTTCCGGCCGACCAGCTCAAACAGTTCCAGAACGCTCATCGCCTCTACGGCGTTTCAAATATCATGAAGGTTTTGAAGCAGACTGGCCCGGGGAAAAAAGAAGAGGCGATGCGATCCATTATCTACGAATCAAACATGAGAGCCAAGTTTCCGGTCACCGGATGCATGGGAATCATCAACCAATTGACATTCCAACTCCAGCAAGCCTACGAGGAGCTCCGGTATGTCCGGTCCCACCTCGCCATCTGCCGTGACCAGTGCCAGTACCAGTACAATTCACCCACGTGTCCGTCTTCGCAGCTACAATTAGGGCTTCAAACAAACGACCACGAGGCGCTGCAGCTCTACCAGCAGCAGTACCAATATCATCAGTATAACTCTGCCGCCGGTAGCAGCGGCGGCGGTGGTGGTGGGATGTCGGAGTATCTGGCGAATGGGATTAATGGGCTTTACATCGATGAGAATGACAGTGTGGTAAAACCTCTCAGGGTTCAGCAGTTTTATTATGGGAACAATAATGTCGATGCTGTGGCAGTTCAACATAATCTGATGACATCCCAAGGGTTTCCCATTCAACAAGAAATGGATGTTCCTCATGACTATGATGACATTCCATTCGATACAATTGCTGATGATCGTCAATCGTACATCGAATCTAAAGAGGCCTGTGAATCGAGTGCCGAATCAGCGTTCAAGGGTACGCAATCGTTAGAACATGTCTCCCAGAATGACCTCAAGAGTGCAGCAGCATTCTTCAGTTTAACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

301

Amino Acids

33.66

Weight (kDa)

5.62

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 24 - 120 1.2e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AciI CCGC 4 cut(s) 516, 528, 531, 534
AclWI GGATC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 871
AcvI CACGTG 1 cut(s) 417
AfaI GTAC 6 cut(s) 89, 398, 404, 491, 779, 832
AfiI CCNNNNNNNGG 1 cut(s) 290
AflIII ACRYGT 2 cut(s) 416, 847
AgsI TTSAA 6 cut(s) 189, 208, 449, 671, 707, 826
AjnI CCWGG 1 cut(s) 66
AleI CACNNNNGTG 1 cut(s) 415
AluBI AGCT 6 cut(s) 121, 148, 349, 433, 475, 900
AluI AGCT 6 cut(s) 121, 148, 349, 433, 475, 900
Alw21I GWGCWC 3 cut(s) 107, 123, 351
Alw26I GTCTC 2 cut(s) 88, 856
Alw44I GTGCAC 1 cut(s) 103
AlwI GGATC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 4 cut(s) 69, 138, 217, 795
ApaLI GTGCAC 1 cut(s) 103
ApeKI GCWGC 8 cut(s) 77, 430, 469, 472, 484, 525, 875, 878
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
AseI ATTAAT 1 cut(s) 573
AspLEI GCGC 2 cut(s) 29, 469
AspS9I GGNCC 2 cut(s) 218, 363
AsuC2I CCSGG 2 cut(s) 221, 222
AsuHPI GGTGA 2 cut(s) 280, 402
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 123, 351
BauI CACGAG 1 cut(s) 461
BbrPI CACGTG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 3 cut(s) 107, 123, 351
BbvI GCAGC 8 cut(s) 64, 442, 456, 484, 496, 537, 887, 890
BccI CCATC 1 cut(s) 383
BceAI ACGGC 2 cut(s) 196, 366
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 221, 222
BcoDI GTCTC 2 cut(s) 88, 856
BfaI CTAG 1 cut(s) 901
BfmI CTRYAG 1 cut(s) 470
BfoI RGCGCY 1 cut(s) 470
BglI GCCNNNNNGGC 1 cut(s) 180
Bme1390I CCNGG 3 cut(s) 68, 221, 222
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 218, 363
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 3 cut(s) 68, 221, 222
BmsI GCATC 3 cut(s) 231, 284, 646
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 851
BpuMI CCSGG 2 cut(s) 221, 222
Bsa29I ATCGAT 1 cut(s) 588
BsaAI YACGTR 1 cut(s) 417
BsaJI CCNNGG 4 cut(s) 108, 220, 221, 691
BsaWI WCCGGW 4 cut(s) 283, 290, 351, 360
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 4 cut(s) 220, 388, 394, 400
BseBI CCWGG 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 4 cut(s) 108, 220, 221, 691
BseGI GGATG 4 cut(s) 299, 552, 686, 724
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 631
BseNI ACTGG 4 cut(s) 220, 388, 394, 400
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 107
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 8 cut(s) 64, 442, 456, 484, 496, 537, 887, 890
BsgI GTGCAG 1 cut(s) 894
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 4 cut(s) 71, 140, 219, 797
BshVI ATCGAT 1 cut(s) 588
BsiEI CGRYCG 1 cut(s) 141
BsiHKAI GWGCWC 3 cut(s) 107, 123, 351
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 7 cut(s) 137, 221, 284, 291, 352, 361, 519
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 2 cut(s) 88, 856
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 2 cut(s) 29, 881
BsnI GGCC 4 cut(s) 71, 140, 219, 797
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 3 cut(s) 107, 123, 351
Bsp143I GATC 4 cut(s) 3, 48, 245, 766
BspACI CCGC 4 cut(s) 516, 528, 531, 534
BspANI GGCC 4 cut(s) 71, 140, 219, 797
BspCNI CTCAG 1 cut(s) 630
BspDI ATCGAT 1 cut(s) 588
BspFNI CGCG 1 cut(s) 29
BspHI TCATGA 2 cut(s) 195, 727
BspLI GGNNCC 1 cut(s) 365
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 4 cut(s) 220, 388, 394, 400
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 4 cut(s) 108, 220, 221, 691
BssMI GATC 4 cut(s) 3, 48, 245, 766
BssSI CACGAG 1 cut(s) 461
BssT1I CCWWGG 2 cut(s) 108, 691
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 4 cut(s) 16, 102, 156, 602
Bst6I CTCTTC 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 4 cut(s) 82, 119, 123, 336
BstDEI CTNAG 1 cut(s) 617
BstEII GGTNACC 1 cut(s) 286
BstF5I GGATG 4 cut(s) 299, 552, 686, 724
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 2 cut(s) 29, 469
BstKTI GATC 4 cut(s) 6, 51, 248, 769
BstMAI GTCTC 2 cut(s) 88, 856
BstMBI GATC 4 cut(s) 3, 48, 245, 766
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 5 cut(s) 77, 180, 481, 531, 818
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 851
BstPI GGTNACC 1 cut(s) 286
BstSCI CCNGG 3 cut(s) 66, 219, 220
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 8 cut(s) 64, 442, 456, 484, 496, 537, 887, 890
BstV2I GAAGAC 1 cut(s) 417
BstZI CGGCCG 1 cut(s) 138
Bsu15I ATCGAT 1 cut(s) 588
BsuRI GGCC 4 cut(s) 71, 140, 219, 797
BsuTUI ATCGAT 1 cut(s) 588
BtgZI GCGATG 2 cut(s) 155, 254
BtsCI GGATG 4 cut(s) 299, 552, 686, 724
BtsIMutI CAGTG 2 cut(s) 395, 607
Cac8I GCNNGC 4 cut(s) 82, 119, 123, 336
CciI TCATGA 2 cut(s) 195, 727
CfoI GCGC 2 cut(s) 29, 469
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 2 cut(s) 218, 363
Cfr9I CCCGGG 1 cut(s) 220
ClaI ATCGAT 1 cut(s) 588
Csp6I GTAC 6 cut(s) 88, 397, 403, 490, 778, 831
CviAII CATG 6 cut(s) 43, 196, 268, 298, 728, 848
CviQI GTAC 6 cut(s) 88, 397, 403, 490, 778, 831
DdeI CTNAG 1 cut(s) 617
DpnI GATC 4 cut(s) 5, 50, 247, 768
DpnII GATC 4 cut(s) 3, 48, 245, 766
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 2 cut(s) 121, 349
EclXI CGGCCG 1 cut(s) 138
Eco130I CCWWGG 2 cut(s) 108, 691
Eco147I AGGCCT 2 cut(s) 71, 797
Eco24I GRGCYC 2 cut(s) 123, 351
Eco47I GGWCC 1 cut(s) 363
Eco52I CGGCCG 1 cut(s) 138
Eco53kI GAGCTC 2 cut(s) 121, 349
Eco57I CTGAAG 1 cut(s) 871
Eco72I CACGTG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 286
EcoICRI GAGCTC 2 cut(s) 121, 349
EcoO65I GGTNACC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 108, 691
EcoT22I ATGCAT 1 cut(s) 299
EcoT38I GRGCYC 2 cut(s) 123, 351
ErhI CCWWGG 2 cut(s) 108, 691
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 6 cut(s) 46, 199, 271, 301, 731, 851
FaqI GGGAC 1 cut(s) 349
FatI CATG 6 cut(s) 42, 195, 267, 297, 727, 847
FbaI TGATCA 1 cut(s) 3
FokI GGATG 4 cut(s) 306, 559, 673, 731
FriOI GRGCYC 2 cut(s) 123, 351
FspBI CTAG 1 cut(s) 901
GlaI GCGC 2 cut(s) 28, 468
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 4 cut(s) 71, 140, 219, 797
HapII CCGG 7 cut(s) 137, 221, 284, 291, 352, 361, 519
HhaI GCGC 2 cut(s) 29, 469
Hin1II CATG 6 cut(s) 46, 199, 271, 301, 731, 851
Hin6I GCGC 2 cut(s) 27, 467
HinP1I GCGC 2 cut(s) 27, 467
HinfI GANTC 5 cut(s) 260, 303, 785, 803, 815
HpaII CCGG 7 cut(s) 137, 221, 284, 291, 352, 361, 519
HphI GGTGA 2 cut(s) 280, 402
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 3 cut(s) 39, 553, 681
Hpy188III TCNNGA 4 cut(s) 160, 196, 728, 868
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 4 cut(s) 16, 102, 156, 602
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 5 cut(s) 84, 105, 297, 472, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 180, 481, 531, 818
HpyF3I CTNAG 1 cut(s) 617
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 6 cut(s) 46, 199, 271, 301, 731, 851
HspAI GCGC 2 cut(s) 27, 467
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 48, 245, 766
LmnI GCTCC 2 cut(s) 346, 354
Lsp1109I GCAGC 8 cut(s) 64, 442, 456, 484, 496, 537, 887, 890
LweI GCATC 3 cut(s) 231, 284, 646
MaeI CTAG 1 cut(s) 901
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 286, 383
MalI GATC 4 cut(s) 5, 50, 247, 768
MboI GATC 4 cut(s) 3, 48, 245, 766
MboII GAAGA 3 cut(s) 245, 417, 877
MfeI CAATTG 2 cut(s) 314, 756
MhlI GDGCHC 3 cut(s) 107, 123, 351
MluCI AATT 4 cut(s) 314, 406, 437, 756
MmeI TCCRAC 3 cut(s) 62, 349, 531
Mph1103I ATGCAT 1 cut(s) 299
MseI TTAA 2 cut(s) 573, 893
MslI CAYNNNNRTG 2 cut(s) 415, 732
MspA1I CMGCKG 1 cut(s) 528
MspI CCGG 7 cut(s) 137, 221, 284, 291, 352, 361, 519
MspR9I CCNGG 3 cut(s) 68, 221, 222
MunI CAATTG 2 cut(s) 314, 756
Mva1269I GAATGC 2 cut(s) 29, 881
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 5 cut(s) 77, 180, 481, 531, 818
NciI CCSGG 2 cut(s) 221, 222
NdeII GATC 4 cut(s) 3, 48, 245, 766
NlaIII CATG 6 cut(s) 46, 199, 271, 301, 731, 851
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 2 cut(s) 286, 383
NsiI ATGCAT 1 cut(s) 299
NspI RCATGY 1 cut(s) 851
OliI CACNNNNGTG 1 cut(s) 415
PagI TCATGA 2 cut(s) 195, 727
PceI AGGCCT 2 cut(s) 71, 797
PciI ACATGT 1 cut(s) 847
PctI GAATGC 2 cut(s) 29, 881
PfeI GAWTC 5 cut(s) 260, 303, 785, 803, 815
PmaCI CACGTG 1 cut(s) 417
PmlI CACGTG 1 cut(s) 417
Ppu21I YACGTR 1 cut(s) 417
PscI ACATGT 1 cut(s) 847
PshBI ATTAAT 1 cut(s) 573
Psp124BI GAGCTC 2 cut(s) 123, 351
Psp6I CCWGG 1 cut(s) 66
PspCI CACGTG 1 cut(s) 417
PspEI GGTNACC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 2 cut(s) 218, 363
PstI CTGCAG 1 cut(s) 474
RsaI GTAC 6 cut(s) 89, 398, 404, 491, 779, 832
RsaNI GTAC 6 cut(s) 88, 397, 403, 490, 778, 831
RseI CAYNNNNRTG 2 cut(s) 415, 732
SacI GAGCTC 2 cut(s) 123, 351
SaqAI TTAA 2 cut(s) 573, 893
Sau3AI GATC 4 cut(s) 3, 48, 245, 766
Sau96I GGNCC 2 cut(s) 218, 363
ScrFI CCNGG 3 cut(s) 68, 221, 222
SduI GDGCHC 3 cut(s) 107, 123, 351
SfaNI GCATC 3 cut(s) 231, 284, 646
SfcI CTRYAG 1 cut(s) 470
SinI GGWCC 1 cut(s) 363
SmaI CCCGGG 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 415, 732
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
Sse9I AATT 4 cut(s) 314, 406, 437, 756
SseBI AGGCCT 2 cut(s) 71, 797
SsiI CCGC 4 cut(s) 516, 528, 531, 534
SspMI CTAG 1 cut(s) 901
SstI GAGCTC 2 cut(s) 123, 351
StuI AGGCCT 2 cut(s) 71, 797
StyD4I CCNGG 3 cut(s) 66, 219, 220
StyI CCWWGG 2 cut(s) 108, 691
TaaI ACNGT 4 cut(s) 16, 102, 156, 602
TaiI ACGT 1 cut(s) 419
TaqI TCGA 6 cut(s) 18, 588, 654, 750, 783, 806
TasI AATT 4 cut(s) 314, 406, 437, 756
TatI WGTACW 1 cut(s) 402
TauI GCSGC 3 cut(s) 518, 531, 534
TfiI GAWTC 5 cut(s) 260, 303, 785, 803, 815
Tru1I TTAA 2 cut(s) 573, 893
Tru9I TTAA 2 cut(s) 573, 893
TscAI CASTG 2 cut(s) 395, 607
TseFI GTSAC 2 cut(s) 286, 383
TseI GCWGC 8 cut(s) 77, 430, 469, 472, 484, 525, 875, 878
Tsp45I GTSAC 2 cut(s) 286, 383
TspDTI ATGAA 2 cut(s) 36, 212
TspGWI ACGGA 1 cut(s) 411
TspMI CCCGGG 1 cut(s) 220
TspRI CASTG 2 cut(s) 395, 607
VneI GTGCAC 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 363
VspI ATTAAT 1 cut(s) 573
XceI RCATGY 1 cut(s) 851
XmaI CCCGGG 1 cut(s) 220
XspI CTAG 1 cut(s) 901
Zsp2I ATGCAT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.