Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Reverse (-)

2263862 .. 2264804

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG032900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTTTCAAAATGCACACAAGCTTTTTGGGGTCTGCAACATCTTGAAGATACTTAAAAGTGTCGACCCTTGTCTCAAGTTTGAGGCCATGAAGTCCATCATCTACCAAGCCAACATTCGAGACAAGTTTCCGGTCTACGGCTGTTGGGAGGTGATCTGGCAATTACAGTACCAGATTATGGTTGCAGAGCAGGAGCTTCAAAATGTTCATAAACAGCTTGCATTGTACAGACAACATCACTACCAGCAGCAGCAGCAGATTTCAGCTATGCCAGATTATGTGACCTCACAATTAGAATTGGGCATGGCACCACCAAATAATAATAATAATACCACCTCACTTTTACATCATAGTACTCCACAATCTTATGATAACAATAATACTGCCATACCTCATGCTTTGCCTGTAACACAACAACAACAACAACAACAACAGCAGCAGCAGCCGCCGCCTTACTCTCATCGAAGCGACAATGCTTACACTTCTGCTTATGACATTGACTCCAAGGAGAATATTACCGCGGAGAATGTTTTGTGGGCGCAAAATCCTTTCACTAACAATAACAGCAGTATCAATGAGAACAACGATAATGCAGAGACAGTTCAATCCCAGTTCGGAGTTTCGCAGACACTAGCTATTGAATCAGAAGATGTTCAAGATTACGATGAGCTGCACCCATTTTTCGATACCATAGATGATAGACAGTCATACATTGATTCCAAAGAGGCTTATGATTCAAGCAGTTCGGAAGAATCTTTTAAGGGCACAACACAATTATCGATGGATCATGCGGCGGAGAACACATTGAAGAGTGCTGCAGCATGCTTCAGTCTTACCAGTGTCAAGTTATCAGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

286

Amino Acids

32.55

Weight (kDa)

4.8

Isoelectric Point (pI)

60.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	2 - 70	1.6e-18	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	2 cut(s)	63, 135
AccII	CGCG	1 cut(s)	521
AciI	CCGC	6 cut(s)	446, 449, 519, 521, 791, 794
AclWI	GGATC	1 cut(s)	792
AcuI	CTGAAG	1 cut(s)	811
AfaI	GTAC	3 cut(s)	170, 227, 355
AfiI	CCNNNNNNNGG	2 cut(s)	137, 178
AgsI	TTSAA	8 cut(s)	8, 46, 200, 605, 641, 656, 738, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	7 cut(s)	22, 196, 217, 266, 635, 670, 858
AluI	AGCT	7 cut(s)	22, 196, 217, 266, 635, 670, 858
Alw26I	GTCTC	3 cut(s)	77, 114, 590
AlwI	GGATC	1 cut(s)	792
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	9 cut(s)	247, 250, 253, 436, 439, 442, 670, 815, 818
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	767
BaeI	ACNNNNGTAYC	2 cut(s)	553, 586
BanI	GGYRCC	1 cut(s)	307
BbvI	GCAGC	9 cut(s)	259, 262, 265, 448, 451, 454, 657, 802, 830
BccI	CCATC	2 cut(s)	104, 775
BceAI	ACGGC	1 cut(s)	154
BcoDI	GTCTC	3 cut(s)	77, 114, 590
BfaI	CTAG	2 cut(s)	632, 859
BfmI	CTRYAG	1 cut(s)	816
BmcAI	AGTACT	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	604
BmuI	ACTGGG	1 cut(s)	604
BoxI	GACNNNNGTC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	779
BsaJI	CCNNGG	2 cut(s)	504, 519
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 178
Bse1I	ACTGG	2 cut(s)	610, 837
BseCI	ATCGAT	1 cut(s)	779
BseDI	CCNNGG	2 cut(s)	504, 519
BseLI	CCNNNNNNNGG	2 cut(s)	137, 178
BseNI	ACTGG	2 cut(s)	610, 837
BseSI	GKGCMC	1 cut(s)	767
BseXI	GCAGC	9 cut(s)	259, 262, 265, 448, 451, 454, 657, 802, 830
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	521
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	779
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	137, 178
BsmAI	GTCTC	3 cut(s)	77, 114, 590
BsnI	GGCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	153, 784
BspACI	CCGC	6 cut(s)	446, 449, 519, 521, 791, 794
BspANI	GGCC	1 cut(s)	86
BspDI	ATCGAT	1 cut(s)	779
BspFNI	CGCG	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	820
BspPI	GGATC	1 cut(s)	792
BspT107I	GGYRCC	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	610, 837
BssECI	CCNNGG	2 cut(s)	504, 519
BssMI	GATC	2 cut(s)	153, 784
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	168, 601, 705
Bst6I	CTCTTC	1 cut(s)	803
BstAUI	TGTACA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	219, 823
BstDSI	CCRYGG	1 cut(s)	519
BstFNI	CGCG	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	156, 787
BstMAI	GTCTC	3 cut(s)	77, 114, 590
BstMBI	GATC	2 cut(s)	153, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	253, 442, 445, 448
BstNSI	RCATGY	1 cut(s)	825
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	1 cut(s)	767
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	9 cut(s)	259, 262, 265, 448, 451, 454, 657, 802, 830
Bsu15I	ATCGAT	1 cut(s)	779
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	779
BtgI	CCRYGG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	844
Cac8I	GCNNGC	2 cut(s)	219, 823
CfoI	GCGC	1 cut(s)	541
Cfr42I	CCGCGG	1 cut(s)	522
ClaI	ATCGAT	1 cut(s)	779
Csp6I	GTAC	3 cut(s)	169, 226, 354
CviAII	CATG	5 cut(s)	88, 304, 395, 788, 822
CviQI	GTAC	3 cut(s)	169, 226, 354
DpnI	GATC	2 cut(s)	155, 786
DpnII	GATC	2 cut(s)	153, 784
Eam1104I	CTCTTC	1 cut(s)	803
EarI	CTCTTC	1 cut(s)	803
EciI	GGCGGA	1 cut(s)	809
Eco130I	CCWWGG	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	811
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	5 cut(s)	91, 307, 398, 791, 825
FatI	CATG	5 cut(s)	87, 303, 394, 787, 821
FblI	GTMKAC	2 cut(s)	63, 135
FspBI	CTAG	2 cut(s)	632, 859
GlaI	GCGC	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	5 cut(s)	91, 307, 398, 791, 825
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	5 cut(s)	500, 641, 716, 734, 752
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	64, 136
Hpy188I	TCNGA	3 cut(s)	617, 646, 748
Hpy188III	TCNNGA	3 cut(s)	43, 119, 656
Hpy8I	GTNNAC	2 cut(s)	64, 136
HpyCH4III	ACNGT	3 cut(s)	168, 601, 705
HpyCH4V	TGCA	7 cut(s)	14, 36, 185, 221, 593, 673, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	253, 442, 445, 448
Hsp92II	CATG	5 cut(s)	91, 307, 398, 791, 825
HspAI	GCGC	1 cut(s)	539
KspI	CCGCGG	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	153, 784
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	9 cut(s)	142, 144, 176, 185, 257, 285, 417, 623, 850
Lsp1109I	GCAGC	9 cut(s)	259, 262, 265, 448, 451, 454, 657, 802, 830
MaeI	CTAG	2 cut(s)	632, 859
MaeIII	GTNAC	2 cut(s)	280, 406
MalI	GATC	2 cut(s)	155, 786
MboI	GATC	2 cut(s)	153, 784
MboII	GAAGA	4 cut(s)	58, 659, 761, 820
MhlI	GDGCHC	1 cut(s)	767
MluCI	AATT	4 cut(s)	161, 290, 296, 773
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	6 cut(s)	76, 142, 295, 346, 402, 718
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	2 cut(s)	54, 759
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	4 cut(s)	253, 442, 445, 448
NdeII	GATC	2 cut(s)	153, 784
NlaIII	CATG	5 cut(s)	91, 307, 398, 791, 825
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	825
PaeI	GCATGC	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	4 cut(s)	641, 716, 734, 752
PflMI	CCANNNNNTGG	1 cut(s)	178
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PshAI	GACNNNNGTC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	820
RsaI	GTAC	3 cut(s)	170, 227, 355
RsaNI	GTAC	3 cut(s)	169, 226, 354
SacII	CCGCGG	1 cut(s)	522
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	54, 759
Sau3AI	GATC	2 cut(s)	153, 784
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	767
SfcI	CTRYAG	1 cut(s)	816
Sfr303I	CCGCGG	1 cut(s)	522
SgrBI	CCGCGG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	825
Sse9I	AATT	4 cut(s)	161, 290, 296, 773
SsiI	CCGC	6 cut(s)	446, 449, 519, 521, 791, 794
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	2 cut(s)	632, 859
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	168, 601, 705
TaqI	TCGA	5 cut(s)	63, 118, 463, 684, 779
TasI	AATT	4 cut(s)	161, 290, 296, 773
TatI	WGTACW	2 cut(s)	225, 353
TauI	GCSGC	3 cut(s)	448, 451, 794
TfiI	GAWTC	4 cut(s)	641, 716, 734, 752
Tru1I	TTAA	2 cut(s)	54, 759
Tru9I	TTAA	2 cut(s)	54, 759
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	9 cut(s)	247, 250, 253, 436, 439, 442, 670, 815, 818
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	104, 197
TspRI	CASTG	1 cut(s)	844
Van91I	CCANNNNNTGG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	825
XmiI	GTMKAC	2 cut(s)	63, 135
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	2 cut(s)	632, 859
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.