Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Forward (+)

64900944 .. 64903223

Gene Structure 2280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTTGCTTCTCATACCCACATTCCTCTTCACCATCACCATCTTCCTCACATCCTTCTTCTTCCTCATTCTTCTTCTCCATCATTACCGCCACCTTTGCAATATTCATCTCTCCAACTCATTTCTAAGCTTTCGATGGTTACATTTGCCACATTGGTTTGAACCACCACCGCAACGAAGCCGACGACACTTTCTTGGTTCAGACAACATAATGACCCTTAAGGGTGCCACCACCCAGGCCTGTGCTGCATGCAAATACCAAAGAAGAAAGTGCACGCCAGAGTGCCCTTTAGCTCCTTATTTCCCTCCAGACCAACCAAAAATGTTTCAAAATGCACACAAGCTTTTTGGGGTCTGCAACATCTTGAAGATACTTAAAAGTGTCGACCCTTGTCTCAAGTTTGAGGCCATGAAGTCCATCATCTACCAAGCCAACATTCGAGACAAGTTTCCGGTCTACGGCTGTTGGGAGGTGATCTGGCAATTACAGTACCAGATTATGGTTGCAGAGCAGGAGCTTCAAAATGTTCATAAACAGCTTGCATTGTACAGACAACATCACTACCACCAGCAGCAGCAGATTTCAGCTATGCCAGATTATGTGACCTCACAATTAGAATTGGGCATGGCACCACCAAATAATAATAATAATACCATCTCACTTTTACATCATAGTACTCCACAATCTTATGATAACAATAATACTGCCATACCTCATGCTTTGCCTGTAACACAAAAACAACAACAACAGCAGCAGCAGCCGCCTTACTCTCATCGAAGCGACAATGCTTGCACTTCTGCTTATGACATTGACTCCAAGGAGAATAGTACCGGGGAGAATGTTTTGTGGGCTCAAAATCCTTTCACTAACAACAACAGCAGTATCAATGAGAACAACGATAATGCAGAGACAGTTCAATCCCAGTTCGGAGTTTTGCAGACACTAGCTATTGAATCAGAAGATGTTCAAGATTACGATGAGCTGCACCCATTTTTCGATACCATAGATGATAGGCAGTCATACATTGATTCCAAAGAGGCTTATGATTCAAGCAGTTCAGAAGAATCTTTTAAGGACACAACACAATTATCGATGGATCATGCGGCGGAGAACACATTGAAGAGTGCTGCAGCACGCTTCAGTCTTACCAGTGTCAAGTTATCAATATATATGGAGAAAAGCAAGAACTATGCAAGGAAAGTACCTGAAAACATGTTGAGTGCATTGAATGACCACATGGAAGGGCTTTTACTGGAGAGTTGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

422

Amino Acids

48.61

Weight (kDa)

6.0

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	80 - 177	5.5e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 628
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	2 cut(s)	384, 456
AciI	CCGC	5 cut(s)	88, 170, 761, 1103, 1106
AclWI	GGATC	1 cut(s)	1104
AcuI	CTGAAG	1 cut(s)	1123
AfaI	GTAC	5 cut(s)	491, 548, 676, 829, 1203
AfiI	CCNNNNNNNGG	2 cut(s)	458, 499
AflII	CTTAAG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	1212
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	8 cut(s)	129, 293, 343, 517, 538, 587, 947, 982
AluI	AGCT	8 cut(s)	129, 293, 343, 517, 538, 587, 947, 982
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	398, 435, 902
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	1104
AoxI	GGCC	2 cut(s)	237, 405
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	9 cut(s)	245, 571, 574, 751, 754, 757, 982, 1127, 1130
Asp700I	GAANNNNTTC	1 cut(s)	963
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	3 cut(s)	22, 28, 484
BaeGI	GKGCMC	2 cut(s)	275, 287
BaeI	ACNNNNGTAYC	2 cut(s)	865, 898
BanI	GGYRCC	2 cut(s)	224, 628
BanII	GRGCYC	1 cut(s)	853
BarI	GAAGNNNNNNTAC	2 cut(s)	1233, 1265
BauI	CACGAG	1 cut(s)	1264
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	9 cut(s)	232, 583, 586, 763, 766, 769, 969, 1114, 1142
BccI	CCATC	7 cut(s)	41, 47, 87, 129, 425, 662, 1087
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	3 cut(s)	398, 435, 902
BfaI	CTAG	1 cut(s)	944
BfmI	CTRYAG	1 cut(s)	1128
BfrI	CTTAAG	1 cut(s)	218
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	2 cut(s)	236, 832
BmiI	GGNNCC	2 cut(s)	226, 630
BmrFI	CCNGG	2 cut(s)	236, 832
BmrI	ACTGGG	1 cut(s)	916
BmuI	ACTGGG	1 cut(s)	916
BoxI	GACNNNNGTC	1 cut(s)	390
BplI	GAGNNNNNCTC	1 cut(s)	1247
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	832
Bsa29I	ATCGAT	1 cut(s)	1091
BsaJI	CCNNGG	3 cut(s)	234, 816, 831
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 499
Bse1I	ACTGG	3 cut(s)	922, 1149, 1257
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	1091
BseDI	CCNNGG	3 cut(s)	234, 816, 831
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	458, 499
BseNI	ACTGG	3 cut(s)	922, 1149, 1257
BseSI	GKGCMC	2 cut(s)	275, 287
BseXI	GCAGC	9 cut(s)	232, 583, 586, 763, 766, 769, 969, 1114, 1142
BsgI	GTGCAG	1 cut(s)	968
BshFI	GGCC	2 cut(s)	239, 407
BshNI	GGYRCC	2 cut(s)	224, 628
BshVI	ATCGAT	1 cut(s)	1091
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	452, 831
BslI	CCNNNNNNNGG	2 cut(s)	458, 499
BsmAI	GTCTC	3 cut(s)	398, 435, 902
BsnI	GGCC	2 cut(s)	239, 407
Bsp1286I	GDGCHC	3 cut(s)	275, 287, 853
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	474, 1096
BspACI	CCGC	5 cut(s)	88, 170, 761, 1103, 1106
BspANI	GGCC	2 cut(s)	239, 407
BspDI	ATCGAT	1 cut(s)	1091
BspLI	GGNNCC	2 cut(s)	226, 630
BspMAI	CTGCAG	1 cut(s)	1132
BspPI	GGATC	1 cut(s)	1104
BspT107I	GGYRCC	2 cut(s)	224, 628
BspTI	CTTAAG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	3 cut(s)	922, 1149, 1257
BssECI	CCNNGG	3 cut(s)	234, 816, 831
BssMI	GATC	2 cut(s)	474, 1096
BssSI	CACGAG	1 cut(s)	1264
BssT1I	CCWWGG	1 cut(s)	816
Bst2BI	CACGAG	1 cut(s)	1264
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	489, 913
Bst6I	CTCTTC	2 cut(s)	32, 1115
BstAFI	CTTAAG	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	5 cut(s)	250, 275, 540, 790, 1135
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	477, 1099
BstMAI	GTCTC	3 cut(s)	398, 435, 902
BstMBI	GATC	2 cut(s)	474, 1096
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 245, 757, 760
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	252, 1216
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	234, 830
BstSFI	CTRYAG	1 cut(s)	1128
BstSLI	GKGCMC	2 cut(s)	275, 287
BstV1I	GCAGC	9 cut(s)	232, 583, 586, 763, 766, 769, 969, 1114, 1142
Bsu15I	ATCGAT	1 cut(s)	1091
BsuRI	GGCC	2 cut(s)	239, 407
BsuTUI	ATCGAT	1 cut(s)	1091
BtsCI	GGATG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	1156
Cac8I	GCNNGC	5 cut(s)	250, 275, 540, 790, 1135
ClaI	ATCGAT	1 cut(s)	1091
Csp6I	GTAC	5 cut(s)	490, 547, 675, 828, 1202
CviAII	CATG	7 cut(s)	249, 409, 625, 716, 1100, 1213, 1237
CviQI	GTAC	5 cut(s)	490, 547, 675, 828, 1202
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	476, 1098
DpnII	GATC	2 cut(s)	474, 1096
Eam1104I	CTCTTC	2 cut(s)	32, 1115
EarI	CTCTTC	2 cut(s)	32, 1115
EciI	GGCGGA	1 cut(s)	1121
Eco130I	CCWWGG	1 cut(s)	816
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	1123
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	816
EcoT38I	GRGCYC	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	7 cut(s)	252, 412, 628, 719, 1103, 1216, 1240
FatI	CATG	7 cut(s)	248, 408, 624, 715, 1099, 1212, 1236
FblI	GTMKAC	2 cut(s)	384, 456
FokI	GGATG	1 cut(s)	37
FriOI	GRGCYC	1 cut(s)	853
FspBI	CTAG	1 cut(s)	944
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	239, 407
HapII	CCGG	2 cut(s)	452, 831
Hin1II	CATG	7 cut(s)	252, 412, 628, 719, 1103, 1216, 1240
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	127, 341
HinfI	GANTC	5 cut(s)	812, 953, 1028, 1046, 1064
HpaII	CCGG	2 cut(s)	452, 831
HphI	GGTGA	3 cut(s)	22, 28, 484
Hpy166II	GTNNAC	3 cut(s)	273, 385, 457
Hpy188I	TCNGA	4 cut(s)	202, 929, 958, 1060
Hpy188III	TCNNGA	5 cut(s)	308, 364, 440, 968, 1266
Hpy8I	GTNNAC	3 cut(s)	273, 385, 457
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	2 cut(s)	64, 1235
HpyCH4III	ACNGT	2 cut(s)	489, 913
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 245, 757, 760
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	7 cut(s)	252, 412, 628, 719, 1103, 1216, 1240
Kzo9I	GATC	2 cut(s)	474, 1096
LmnI	GCTCC	2 cut(s)	298, 514
Lsp1109I	GCAGC	9 cut(s)	232, 583, 586, 763, 766, 769, 969, 1114, 1142
MaeI	CTAG	1 cut(s)	944
MaeIII	GTNAC	3 cut(s)	138, 601, 727
MalI	GATC	2 cut(s)	476, 1098
MboI	GATC	2 cut(s)	474, 1096
MhlI	GDGCHC	3 cut(s)	275, 287, 853
MluCI	AATT	4 cut(s)	482, 611, 617, 1085
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	9 cut(s)	35, 56, 74, 315, 397, 463, 616, 723, 1030
MroXI	GAANNNNTTC	1 cut(s)	963
MseI	TTAA	3 cut(s)	219, 375, 1071
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	2 cut(s)	452, 831
MspR9I	CCNGG	2 cut(s)	236, 832
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	4 cut(s)	96, 245, 757, 760
NciI	CCSGG	1 cut(s)	832
NdeII	GATC	2 cut(s)	474, 1096
NlaIII	CATG	7 cut(s)	252, 412, 628, 719, 1103, 1216, 1240
NlaIV	GGNNCC	2 cut(s)	226, 630
NmuCI	GTSAC	1 cut(s)	601
NspI	RCATGY	2 cut(s)	252, 1216
PaeI	GCATGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	239
PciI	ACATGT	1 cut(s)	1212
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	4 cut(s)	953, 1028, 1046, 1064
PflMI	CCANNNNNTGG	1 cut(s)	499
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
PscI	ACATGT	1 cut(s)	1212
PshAI	GACNNNNGTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	226, 630
PstI	CTGCAG	1 cut(s)	1132
RsaI	GTAC	5 cut(s)	491, 548, 676, 829, 1203
RsaNI	GTAC	5 cut(s)	490, 547, 675, 828, 1202
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	219, 375, 1071
Sau3AI	GATC	2 cut(s)	474, 1096
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	236, 832
SduI	GDGCHC	3 cut(s)	275, 287, 853
SfcI	CTRYAG	1 cut(s)	1128
SmlI	CTYRAG	2 cut(s)	218, 395
SmoI	CTYRAG	2 cut(s)	218, 395
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	4 cut(s)	482, 611, 617, 1085
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	5 cut(s)	88, 170, 761, 1103, 1106
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	944
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	234, 830
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	2 cut(s)	489, 913
TaqI	TCGA	6 cut(s)	133, 384, 439, 775, 996, 1091
TasI	AATT	4 cut(s)	482, 611, 617, 1085
TatI	WGTACW	2 cut(s)	546, 674
TauI	GCSGC	2 cut(s)	763, 1106
TfiI	GAWTC	4 cut(s)	953, 1028, 1046, 1064
Tru1I	TTAA	3 cut(s)	219, 375, 1071
Tru9I	TTAA	3 cut(s)	219, 375, 1071
TscAI	CASTG	1 cut(s)	1156
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	9 cut(s)	245, 571, 574, 751, 754, 757, 982, 1127, 1130
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	95, 425, 518
TspRI	CASTG	1 cut(s)	1156
Van91I	CCANNNNNTGG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	218
VneI	GTGCAC	1 cut(s)	271
XceI	RCATGY	2 cut(s)	252, 1216
XmiI	GTMKAC	2 cut(s)	384, 456
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	1 cut(s)	944
ZrmI	AGTACT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.