Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003526.1

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Forward (+)

73319 .. 74838

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003526.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atgttgcttctcatacccacattcttcttcaccatcaccatcttcctcacatccttcttcttcctcattcttcttctccatcattaccgccacctttgcaatattcatctctccaactcatttctaagctttcgatggctacatttgccacattggtttgaaccaccaccgcaacgaagccgacgacacttaattggttcagacaacataatgaccctcaagggtgccaccagccaggcctgtgctgcatgcaaataccaaagaagaaagtgcacgccagagtgccctttagctccttatttccctccagaccaaccaaaaatgtttcaaaatgcacacaagctttttggggtctgcaacatcttgaagatacttaaaagtgtcgacccttgtctcaagtttgaggccatgaagtccatcatctaccaagccaacattcgagacaagtttccggtctacggctgttgggaggtgatctggcaattacagtaccagattatggttgcagagcaggagcttcaaaatgttcataaacagcttgcattgtacagacaacatcactaccagcagcagcagcagatttcagctatgccagattatgtgacctcacaattagaattgggcatggcaccaccaaataataataataataccacctcgcttttacatcatagtactccacaatcttatgataacaataatactgccatacctcatgctttgcctgtaacacaacaacaacaacagcagcagcagcagccgccttactctcatcgaagcgacaatgcttacacttctgcttatgacattgactccaaggagaatattaccggggagaatttacttttacatcatagtactccacaatcttatgataacaataatactgccatacctcatgctttgcctgtaacacaacaacaacaacaacaacaacaacagcagcagcagccgccttactctcatcgaagcggcaatgcttacacttctgcttatgacattgactccaaggagaatattaccgcggagaatgttttgtgggcgcaaaatcctttcactaacaataacagcagtatcaatgagaacaacgataatgcagagacagttcaatcccagttcggagtttcgcagacactagctattgaatcagaagatgttcaagattacgatgagctgcacccatttttcgataccatagatgatagacagtcatacattgattccaaagaggcttatgattcaagcagttcggaagaatcttttaagggcacaacacaattatcgatggatcatgcggcggagaacacattgaagagtgctgcagcatgcttcagtcttaccagtgtcaagttatcagtaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

454

Amino Acids

52.07

Weight (kDa)

5.86

Isoelectric Point (pI)

68.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 628
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	2 cut(s)	384, 456
AccII	CGCG	1 cut(s)	1025
AciI	CCGC	9 cut(s)	88, 170, 761, 953, 972, 1023, 1025, 1295, 1298
AclWI	GGATC	1 cut(s)	1296
AcsI	RAATTY	1 cut(s)	838
AcuI	CTGAAG	1 cut(s)	1315
AfaI	GTAC	4 cut(s)	491, 548, 676, 859
AfiI	CCNNNNNNNGG	2 cut(s)	458, 499
AgsI	TTSAA	9 cut(s)	161, 329, 367, 521, 1109, 1145, 1160, 1242, 1312
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	9 cut(s)	129, 293, 343, 517, 538, 587, 1139, 1174, 1362
AluI	AGCT	9 cut(s)	129, 293, 343, 517, 538, 587, 1139, 1174, 1362
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	398, 435, 1094
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	1296
AoxI	GGCC	2 cut(s)	237, 405
ApaLI	GTGCAC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	838
Asp700I	GAANNNNTTC	1 cut(s)	1155
AspLEI	GCGC	1 cut(s)	1045
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	3 cut(s)	22, 28, 484
BaeGI	GKGCMC	3 cut(s)	275, 287, 1271
BaeI	ACNNNNGTAYC	2 cut(s)	1057, 1090
BanI	GGYRCC	2 cut(s)	224, 628
Bbv12I	GWGCWC	1 cut(s)	275
BccI	CCATC	6 cut(s)	41, 47, 87, 129, 425, 1279
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	3 cut(s)	398, 435, 1094
BfaI	CTAG	2 cut(s)	1136, 1363
BfmI	CTRYAG	1 cut(s)	1320
BmcAI	AGTACT	2 cut(s)	676, 859
Bme1390I	CCNGG	2 cut(s)	236, 832
BmiI	GGNNCC	2 cut(s)	226, 630
BmrFI	CCNGG	2 cut(s)	236, 832
BmrI	ACTGGG	1 cut(s)	1108
BmuI	ACTGGG	1 cut(s)	1108
BoxI	GACNNNNGTC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	203, 380
BpuMI	CCSGG	1 cut(s)	832
Bsa29I	ATCGAT	1 cut(s)	1283
BsaJI	CCNNGG	4 cut(s)	816, 831, 1008, 1023
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	4 cut(s)	797, 827, 989, 1019
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 499
Bse1I	ACTGG	2 cut(s)	1114, 1341
Bse3DI	GCAATG	1 cut(s)	982
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	1283
BseDI	CCNNGG	4 cut(s)	816, 831, 1008, 1023
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	458, 499
BseMI	GCAATG	1 cut(s)	982
BseNI	ACTGG	2 cut(s)	1114, 1341
BseSI	GKGCMC	3 cut(s)	275, 287, 1271
BsgI	GTGCAG	1 cut(s)	1160
Bsh1236I	CGCG	1 cut(s)	1025
BshFI	GGCC	2 cut(s)	239, 407
BshNI	GGYRCC	2 cut(s)	224, 628
BshVI	ATCGAT	1 cut(s)	1283
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	452, 831
BslI	CCNNNNNNNGG	2 cut(s)	458, 499
BsmAI	GTCTC	3 cut(s)	398, 435, 1094
BsnI	GGCC	2 cut(s)	239, 407
Bsp1286I	GDGCHC	3 cut(s)	275, 287, 1271
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	474, 1288
BspACI	CCGC	9 cut(s)	88, 170, 761, 953, 972, 1023, 1025, 1295, 1298
BspANI	GGCC	2 cut(s)	239, 407
BspDI	ATCGAT	1 cut(s)	1283
BspFNI	CGCG	1 cut(s)	1025
BspLI	GGNNCC	2 cut(s)	226, 630
BspMAI	CTGCAG	1 cut(s)	1324
BspPI	GGATC	1 cut(s)	1296
BspT107I	GGYRCC	2 cut(s)	224, 628
BsrDI	GCAATG	1 cut(s)	982
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	1114, 1341
BssECI	CCNNGG	4 cut(s)	816, 831, 1008, 1023
BssMI	GATC	2 cut(s)	474, 1288
BssT1I	CCWWGG	2 cut(s)	816, 1008
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	489, 1105, 1209
Bst6I	CTCTTC	1 cut(s)	1307
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	4 cut(s)	250, 275, 540, 1327
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	1023
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	1025
BstHHI	GCGC	1 cut(s)	1045
BstKTI	GATC	2 cut(s)	477, 1291
BstMAI	GTCTC	3 cut(s)	398, 435, 1094
BstMBI	GATC	2 cut(s)	474, 1288
BstMWI	GCNNNNNNNGC	9 cut(s)	96, 145, 245, 574, 754, 757, 760, 949, 952
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	252, 1329
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	234, 830
BstSFI	CTRYAG	1 cut(s)	1320
BstSLI	GKGCMC	3 cut(s)	275, 287, 1271
BstUI	CGCG	1 cut(s)	1025
Bsu15I	ATCGAT	1 cut(s)	1283
BsuRI	GGCC	2 cut(s)	239, 407
BsuTUI	ATCGAT	1 cut(s)	1283
BtgI	CCRYGG	1 cut(s)	1023
BtsCI	GGATG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	1348
Cac8I	GCNNGC	4 cut(s)	250, 275, 540, 1327
CfoI	GCGC	1 cut(s)	1045
Cfr42I	CCGCGG	1 cut(s)	1026
ClaI	ATCGAT	1 cut(s)	1283
Csp6I	GTAC	4 cut(s)	490, 547, 675, 858
CviAII	CATG	7 cut(s)	249, 409, 625, 716, 899, 1292, 1326
CviQI	GTAC	4 cut(s)	490, 547, 675, 858
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	476, 1290
DpnII	GATC	2 cut(s)	474, 1288
Eam1104I	CTCTTC	1 cut(s)	1307
EarI	CTCTTC	1 cut(s)	1307
EciI	GGCGGA	1 cut(s)	1313
Eco130I	CCWWGG	2 cut(s)	816, 1008
Eco147I	AGGCCT	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	1315
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	816, 1008
ErhI	CCWWGG	2 cut(s)	816, 1008
FaeI	CATG	7 cut(s)	252, 412, 628, 719, 902, 1295, 1329
FatI	CATG	7 cut(s)	248, 408, 624, 715, 898, 1291, 1325
FblI	GTMKAC	2 cut(s)	384, 456
FokI	GGATG	1 cut(s)	37
FspBI	CTAG	2 cut(s)	1136, 1363
GlaI	GCGC	1 cut(s)	1044
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	239, 407
HapII	CCGG	2 cut(s)	452, 831
HhaI	GCGC	1 cut(s)	1045
Hin1II	CATG	7 cut(s)	252, 412, 628, 719, 902, 1295, 1329
Hin6I	GCGC	1 cut(s)	1043
HinP1I	GCGC	1 cut(s)	1043
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	127, 341
HinfI	GANTC	6 cut(s)	812, 1004, 1145, 1220, 1238, 1256
HpaII	CCGG	2 cut(s)	452, 831
HphI	GGTGA	3 cut(s)	22, 28, 484
Hpy166II	GTNNAC	3 cut(s)	273, 385, 457
Hpy188I	TCNGA	4 cut(s)	202, 1121, 1150, 1252
Hpy188III	TCNNGA	4 cut(s)	308, 364, 440, 1160
Hpy8I	GTNNAC	3 cut(s)	273, 385, 457
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	489, 1105, 1209
HpyF10VI	GCNNNNNNNGC	9 cut(s)	96, 145, 245, 574, 754, 757, 760, 949, 952
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	7 cut(s)	252, 412, 628, 719, 902, 1295, 1329
HspAI	GCGC	1 cut(s)	1043
KspI	CCGCGG	1 cut(s)	1026
Kzo9I	GATC	2 cut(s)	474, 1288
LmnI	GCTCC	2 cut(s)	298, 514
MaeI	CTAG	2 cut(s)	1136, 1363
MaeIII	GTNAC	3 cut(s)	601, 727, 910
MalI	GATC	2 cut(s)	476, 1290
MboI	GATC	2 cut(s)	474, 1288
MhlI	GDGCHC	3 cut(s)	275, 287, 1271
MluCI	AATT	6 cut(s)	192, 482, 611, 617, 838, 1277
MlyI	GAGTC	2 cut(s)	806, 998
MmeI	TCCRAC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	1155
MseI	TTAA	3 cut(s)	191, 375, 1263
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	452, 831
MspR9I	CCNGG	2 cut(s)	236, 832
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	1025
MwoI	GCNNNNNNNGC	9 cut(s)	96, 145, 245, 574, 754, 757, 760, 949, 952
NciI	CCSGG	1 cut(s)	832
NdeII	GATC	2 cut(s)	474, 1288
NlaIII	CATG	7 cut(s)	252, 412, 628, 719, 902, 1295, 1329
NlaIV	GGNNCC	2 cut(s)	226, 630
NmuCI	GTSAC	1 cut(s)	601
NspI	RCATGY	2 cut(s)	252, 1329
PaeI	GCATGC	2 cut(s)	252, 1329
PceI	AGGCCT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	1155
PfeI	GAWTC	4 cut(s)	1145, 1220, 1238, 1256
PflMI	CCANNNNNTGG	1 cut(s)	499
PleI	GAGTC	2 cut(s)	806, 998
PpsI	GAGTC	2 cut(s)	806, 998
PshAI	GACNNNNGTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	226, 630
PstI	CTGCAG	1 cut(s)	1324
RsaI	GTAC	4 cut(s)	491, 548, 676, 859
RsaNI	GTAC	4 cut(s)	490, 547, 675, 858
SacII	CCGCGG	1 cut(s)	1026
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	191, 375, 1263
Sau3AI	GATC	2 cut(s)	474, 1288
ScaI	AGTACT	2 cut(s)	676, 859
SchI	GAGTC	2 cut(s)	806, 998
ScrFI	CCNGG	2 cut(s)	236, 832
SduI	GDGCHC	3 cut(s)	275, 287, 1271
SfcI	CTRYAG	1 cut(s)	1320
Sfr303I	CCGCGG	1 cut(s)	1026
SgrBI	CCGCGG	1 cut(s)	1026
SmlI	CTYRAG	2 cut(s)	218, 395
SmoI	CTYRAG	2 cut(s)	218, 395
SphI	GCATGC	2 cut(s)	252, 1329
Sse9I	AATT	6 cut(s)	192, 482, 611, 617, 838, 1277
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	9 cut(s)	88, 170, 761, 953, 972, 1023, 1025, 1295, 1298
SspI	AATATT	3 cut(s)	103, 826, 1018
SspMI	CTAG	2 cut(s)	1136, 1363
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	234, 830
StyI	CCWWGG	2 cut(s)	816, 1008
TaaI	ACNGT	3 cut(s)	489, 1105, 1209
TaqI	TCGA	7 cut(s)	133, 384, 439, 775, 967, 1188, 1283
TasI	AATT	6 cut(s)	192, 482, 611, 617, 838, 1277
TatI	WGTACW	3 cut(s)	546, 674, 857
TauI	GCSGC	4 cut(s)	763, 955, 975, 1298
TfiI	GAWTC	4 cut(s)	1145, 1220, 1238, 1256
Tru1I	TTAA	3 cut(s)	191, 375, 1263
Tru9I	TTAA	3 cut(s)	191, 375, 1263
TscAI	CASTG	1 cut(s)	1348
TseFI	GTSAC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	95, 425, 518
TspRI	CASTG	1 cut(s)	1348
Van91I	CCANNNNNTGG	1 cut(s)	499
VneI	GTGCAC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	838
XceI	RCATGY	2 cut(s)	252, 1329
XmiI	GTMKAC	2 cut(s)	384, 456
XmnI	GAANNNNTTC	1 cut(s)	1155
XspI	CTAG	2 cut(s)	1136, 1363
ZrmI	AGTACT	2 cut(s)	676, 859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.