Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Reverse (-)

2365350 .. 2366280

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG034800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTTCAAAATGCACACAAGCTTTTTGGGGTCTGCAACATCTTGAAGATACTTAAAAGTGTCGACCCTTGTCTCAAGTTTGAGGCCATGAAGTCCATCATCTACCAAGCCAACATTCGAGACAAGTTTCCGGTCTACGGCTGTTGGGAGGTGATCTGGCAATTACAGTACCATATTATGGTTGCAGAGCAGGAGCTTCAAAATGTTCATAAACAGCTTGCATTGTACAGACAACATCACTACCAGCAGCAGCAGCAGATTTCAGCTATGCCAGATTATGTGGCCTCACAATTAGAATTGGGCATGGCACCACCAAATAATAATAATAATACCATCTCACTTTTACATCATAGTACTCCACAATCTTATGATAACAATAATACTGCCATACCTCATGCTTTGCCTGTAACGCAACAACAACAACAGCAGCAGCAGCCGCCTTACTCTCATCGAAGCGACAATGCTTACACTTCTGCTTATGACATTGACTCCAAGGAGAATATTACCGGGGAGAATGTTTTGTGGGCGCAAAATCCTTTCACTAACAACAACAGCAGTATCAATGAGAACAACGATAATGCAGAGACAGTTCAATCCCAGTTCGGAGTTTCGCAGACACTAGCTATTGAATCAGAAGATGTTCAAGATTACGATGAGCTGCACCCATTTTTCGATACCATAGATGATAGACAGTCATACATTGATTCCAAAGAGGCTTATGATTCAAGCAGTTCGGAAGAATCTTTTAAGGACACAACACAATTATCGATGGATCATGCGGCGGAGAACACATTGAAGAGTGCTGCAGCATGCTTCAGTCTTACCAGTGTCAAGTTATCAGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

282

Amino Acids

32.11

Weight (kDa)

4.8

Isoelectric Point (pI)

60.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	2 - 70	3.3e-18	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	2 cut(s)	63, 135
AciI	CCGC	3 cut(s)	437, 779, 782
AclWI	GGATC	1 cut(s)	780
AcuI	CTGAAG	1 cut(s)	799
AfaI	GTAC	3 cut(s)	170, 227, 355
AfiI	CCNNNNNNNGG	2 cut(s)	137, 178
AgsI	TTSAA	8 cut(s)	8, 46, 200, 593, 629, 644, 726, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	7 cut(s)	22, 196, 217, 266, 623, 658, 846
AluI	AGCT	7 cut(s)	22, 196, 217, 266, 623, 658, 846
Alw26I	GTCTC	3 cut(s)	77, 114, 578
AlwI	GGATC	1 cut(s)	780
AoxI	GGCC	2 cut(s)	84, 282
ApeKI	GCWGC	9 cut(s)	247, 250, 253, 427, 430, 433, 658, 803, 806
Asp700I	GAANNNNTTC	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	529
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	541, 574
BanI	GGYRCC	1 cut(s)	307
BbvI	GCAGC	9 cut(s)	259, 262, 265, 439, 442, 445, 645, 790, 818
BccI	CCATC	3 cut(s)	104, 341, 763
BceAI	ACGGC	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	3 cut(s)	77, 114, 578
BfaI	CTAG	2 cut(s)	620, 847
BfmI	CTRYAG	1 cut(s)	804
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	508
BmrI	ACTGGG	1 cut(s)	592
BmuI	ACTGGG	1 cut(s)	592
BoxI	GACNNNNGTC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	508
Bsa29I	ATCGAT	1 cut(s)	767
BsaJI	CCNNGG	2 cut(s)	492, 507
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 178
Bse1I	ACTGG	2 cut(s)	598, 825
BseCI	ATCGAT	1 cut(s)	767
BseDI	CCNNGG	2 cut(s)	492, 507
BseLI	CCNNNNNNNGG	2 cut(s)	137, 178
BseNI	ACTGG	2 cut(s)	598, 825
BseXI	GCAGC	9 cut(s)	259, 262, 265, 439, 442, 445, 645, 790, 818
BsgI	GTGCAG	1 cut(s)	644
BshFI	GGCC	2 cut(s)	86, 284
BshNI	GGYRCC	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	767
BsiSI	CCGG	2 cut(s)	131, 507
BslI	CCNNNNNNNGG	2 cut(s)	137, 178
BsmAI	GTCTC	3 cut(s)	77, 114, 578
BsnI	GGCC	2 cut(s)	86, 284
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	153, 772
BspACI	CCGC	3 cut(s)	437, 779, 782
BspANI	GGCC	2 cut(s)	86, 284
BspDI	ATCGAT	1 cut(s)	767
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	598, 825
BssECI	CCNNGG	2 cut(s)	492, 507
BssMI	GATC	2 cut(s)	153, 772
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	168, 589, 693
Bst6I	CTCTTC	1 cut(s)	791
BstAUI	TGTACA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	219, 811
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	2 cut(s)	156, 775
BstMAI	GTCTC	3 cut(s)	77, 114, 578
BstMBI	GATC	2 cut(s)	153, 772
BstMWI	GCNNNNNNNGC	4 cut(s)	253, 409, 433, 436
BstNSI	RCATGY	1 cut(s)	813
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	804
BstV1I	GCAGC	9 cut(s)	259, 262, 265, 439, 442, 445, 645, 790, 818
Bsu15I	ATCGAT	1 cut(s)	767
BsuRI	GGCC	2 cut(s)	86, 284
BsuTUI	ATCGAT	1 cut(s)	767
BtsIMutI	CAGTG	1 cut(s)	832
Cac8I	GCNNGC	2 cut(s)	219, 811
CfoI	GCGC	1 cut(s)	529
ClaI	ATCGAT	1 cut(s)	767
Csp6I	GTAC	3 cut(s)	169, 226, 354
CviAII	CATG	5 cut(s)	88, 304, 395, 776, 810
CviQI	GTAC	3 cut(s)	169, 226, 354
DpnI	GATC	2 cut(s)	155, 774
DpnII	GATC	2 cut(s)	153, 772
Eam1104I	CTCTTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	791
EciI	GGCGGA	1 cut(s)	797
Eco130I	CCWWGG	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	799
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	5 cut(s)	91, 307, 398, 779, 813
FatI	CATG	5 cut(s)	87, 303, 394, 775, 809
FblI	GTMKAC	2 cut(s)	63, 135
FspBI	CTAG	2 cut(s)	620, 847
GlaI	GCGC	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	86, 284
HapII	CCGG	2 cut(s)	131, 507
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	5 cut(s)	91, 307, 398, 779, 813
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	5 cut(s)	488, 629, 704, 722, 740
HpaII	CCGG	2 cut(s)	131, 507
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	64, 136
Hpy188I	TCNGA	3 cut(s)	605, 634, 736
Hpy188III	TCNNGA	3 cut(s)	43, 119, 644
Hpy8I	GTNNAC	2 cut(s)	64, 136
HpyCH4III	ACNGT	3 cut(s)	168, 589, 693
HpyCH4V	TGCA	7 cut(s)	14, 36, 185, 221, 581, 661, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	253, 409, 433, 436
Hsp92II	CATG	5 cut(s)	91, 307, 398, 779, 813
HspAI	GCGC	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	153, 772
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	9 cut(s)	142, 144, 176, 257, 285, 417, 520, 611, 838
Lsp1109I	GCAGC	9 cut(s)	259, 262, 265, 439, 442, 445, 645, 790, 818
MaeI	CTAG	2 cut(s)	620, 847
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	155, 774
MboI	GATC	2 cut(s)	153, 772
MboII	GAAGA	4 cut(s)	58, 647, 749, 808
MluCI	AATT	4 cut(s)	161, 290, 296, 761
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	5 cut(s)	76, 142, 295, 402, 706
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	2 cut(s)	54, 747
MspI	CCGG	2 cut(s)	131, 507
MspR9I	CCNGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	4 cut(s)	253, 409, 433, 436
NciI	CCSGG	1 cut(s)	508
NdeII	GATC	2 cut(s)	153, 772
NlaIII	CATG	5 cut(s)	91, 307, 398, 779, 813
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	813
PaeI	GCATGC	1 cut(s)	813
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	4 cut(s)	629, 704, 722, 740
PflMI	CCANNNNNTGG	1 cut(s)	178
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PshAI	GACNNNNGTC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	808
RsaI	GTAC	3 cut(s)	170, 227, 355
RsaNI	GTAC	3 cut(s)	169, 226, 354
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	54, 747
Sau3AI	GATC	2 cut(s)	153, 772
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	508
SetI	ASST	9 cut(s)	24, 153, 198, 219, 268, 394, 625, 660, 848
SfcI	CTRYAG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	813
Sse9I	AATT	4 cut(s)	161, 290, 296, 761
SsiI	CCGC	3 cut(s)	437, 779, 782
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	2 cut(s)	620, 847
StyD4I	CCNGG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	3 cut(s)	168, 589, 693
TaqI	TCGA	5 cut(s)	63, 118, 451, 672, 767
TasI	AATT	4 cut(s)	161, 290, 296, 761
TatI	WGTACW	2 cut(s)	225, 353
TauI	GCSGC	2 cut(s)	439, 782
TfiI	GAWTC	4 cut(s)	629, 704, 722, 740
Tru1I	TTAA	2 cut(s)	54, 747
Tru9I	TTAA	2 cut(s)	54, 747
TscAI	CASTG	1 cut(s)	832
TseI	GCWGC	9 cut(s)	247, 250, 253, 427, 430, 433, 658, 803, 806
TspDTI	ATGAA	2 cut(s)	104, 197
TspRI	CASTG	1 cut(s)	832
Van91I	CCANNNNNTGG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	813
XmiI	GTMKAC	2 cut(s)	63, 135
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	2 cut(s)	620, 847
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.