Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Reverse (-)

2270206 .. 2271610

Gene Structure 1405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16082

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTGCTTCTCATACCCACATTCTTCTTCACCATCACCATCTTCCTCACATCCTTCTTCTTCCTCATTCTTCTTCTCCATCATTACCGCCACCTTTGCAATATTCATCTCTCCAACTCATTTCTAAGCTTTCGATGGCTACATTTGCCACATTGGTTTGAACCACCACCGCAACGAAGCCGACGACACTTAATTGGTTCAGACAACATAATGACCCTTAAGGGTGCCACCAGCCAGGCCTGTGCTGCATGCAAATACCAAAGAAGAAAGTGCACGCCAGAGTGCCCTTTAGCTCCTTATTTCCCTCCAGACCAACCAAAAATGTTTCAAAATGCACACAAGCTTTTTGGGGTCTGCAACATCTTGAAGATACTTAAAAGTGTCGACCCTTGTCTCAAGTTTGAGGCCATGAAGTCCATCATCTACCAAGCCAACATTCGAGACAAGTTTCCGGTCTACGGCTGTTGGGAGGTTATCTGGCAATTACAGTACCAGATTATGGTTGCAGAGCAGGAGCTTCAAAATGTTCATAAACAGCTTGCATTGTACAGACAACATCACTACCAGCAGCAGCAGCAGATTTCAGCTATGCCAGATTATGTGACCTCACAATTAGAATTGGGCATGGCACCACCAAATAATAATAATAATACCACCTCACTTTTACATCATAGTACTCCACAATCTTATGATAACAATAATACTGCCATACCTCATGCTTTGCCTGTAACACAACAACAACAACAGCAGCAGCAGCAGCCGCCTTACTCTCATCGAAGCGACAATGCTTACACTTCTGCTTATGACATTGACTCCAAGGAGAATATTGCCGGGGAGAATGTTTTGTGGGCGCAAAATCCTTTTACTAACAATAACAGCAGTATCAATGAGAACAACGATAATGCAGAGACAGTTCAATCCCAGTTCGGAGTTTCGCAGACACTAGCTATTGAATCAGAAGATGTTCAAGATTACGATGAACTGCACCCATTTTTCGATACCATAGATGATAGACAGTCATACATTGATTCCAAAGAGGCTTATGATTCAAGCAGGTACATTCGATTGTCACAAAATGATGAGTTGATGACCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

365

Amino Acids

42.49

Weight (kDa)

5.94

Isoelectric Point (pI)

68.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	80 - 177	4.3e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1044
AccB1I	GGYRCC	2 cut(s)	224, 628
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	2 cut(s)	384, 456
AciI	CCGC	3 cut(s)	88, 170, 761
AfaI	GTAC	4 cut(s)	491, 548, 676, 1058
AfiI	CCNNNNNNNGG	2 cut(s)	458, 499
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	8 cut(s)	161, 329, 367, 521, 917, 953, 968, 1050
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	7 cut(s)	129, 293, 343, 517, 538, 587, 947
AluI	AGCT	7 cut(s)	129, 293, 343, 517, 538, 587, 947
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	398, 435, 902
Alw44I	GTGCAC	1 cut(s)	271
AoxI	GGCC	2 cut(s)	237, 405
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	8 cut(s)	245, 568, 571, 574, 748, 751, 754, 757
Asp700I	GAANNNNTTC	1 cut(s)	963
AspLEI	GCGC	1 cut(s)	853
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	2 cut(s)	22, 28
BaeGI	GKGCMC	2 cut(s)	275, 287
BaeI	ACNNNNGTAYC	2 cut(s)	865, 898
BanI	GGYRCC	2 cut(s)	224, 628
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	8 cut(s)	232, 580, 583, 586, 760, 763, 766, 769
BccI	CCATC	5 cut(s)	41, 47, 87, 129, 425
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	3 cut(s)	398, 435, 902
BfaI	CTAG	1 cut(s)	944
BfrI	CTTAAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	1044
BisI	GCNGC	9 cut(s)	246, 569, 572, 575, 749, 752, 755, 758, 761
BlsI	GCNGC	9 cut(s)	247, 570, 573, 576, 750, 753, 756, 759, 762
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	2 cut(s)	236, 832
BmiI	GGNNCC	2 cut(s)	226, 630
BmrFI	CCNGG	2 cut(s)	236, 832
BmrI	ACTGGG	1 cut(s)	916
BmuI	ACTGGG	1 cut(s)	916
BoxI	GACNNNNGTC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	832
BsaJI	CCNNGG	2 cut(s)	816, 831
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 499
Bse1I	ACTGG	1 cut(s)	922
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	816, 831
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	458, 499
BseNI	ACTGG	1 cut(s)	922
BseSI	GKGCMC	2 cut(s)	275, 287
BseXI	GCAGC	8 cut(s)	232, 580, 583, 586, 760, 763, 766, 769
BsgI	GTGCAG	1 cut(s)	968
BshFI	GGCC	2 cut(s)	239, 407
BshNI	GGYRCC	2 cut(s)	224, 628
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	452, 831
BslI	CCNNNNNNNGG	2 cut(s)	458, 499
BsmAI	GTCTC	3 cut(s)	398, 435, 902
BsnI	GGCC	2 cut(s)	239, 407
Bsp1286I	GDGCHC	2 cut(s)	275, 287
Bsp1407I	TGTACA	1 cut(s)	546
BspACI	CCGC	3 cut(s)	88, 170, 761
BspANI	GGCC	2 cut(s)	239, 407
BspLI	GGNNCC	2 cut(s)	226, 630
BspMI	ACCTGC	1 cut(s)	1044
BspT107I	GGYRCC	2 cut(s)	224, 628
BspTI	CTTAAG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	922
BssECI	CCNNGG	2 cut(s)	816, 831
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	489, 913, 1017
BstAFI	CTTAAG	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	250, 275, 540
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	853
BstMAI	GTCTC	3 cut(s)	398, 435, 902
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 145, 245, 574, 754, 757, 760
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	252
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	234, 830
BstSLI	GKGCMC	2 cut(s)	275, 287
BstV1I	GCAGC	8 cut(s)	232, 580, 583, 586, 760, 763, 766, 769
BsuRI	GGCC	2 cut(s)	239, 407
BtsCI	GGATG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	1044
Cac8I	GCNNGC	3 cut(s)	250, 275, 540
CfoI	GCGC	1 cut(s)	853
Csp6I	GTAC	4 cut(s)	490, 547, 675, 1057
CviAII	CATG	5 cut(s)	249, 409, 625, 716, 1093
CviQI	GTAC	4 cut(s)	490, 547, 675, 1057
DdeI	CTNAG	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	816
Eco147I	AGGCCT	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	5 cut(s)	252, 412, 628, 719, 1096
FatI	CATG	5 cut(s)	248, 408, 624, 715, 1092
FblI	GTMKAC	2 cut(s)	384, 456
Fnu4HI	GCNGC	9 cut(s)	246, 569, 572, 575, 749, 752, 755, 758, 761
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	9 cut(s)	246, 569, 572, 575, 749, 752, 755, 758, 761
FspBI	CTAG	1 cut(s)	944
GlaI	GCGC	1 cut(s)	852
GluI	GCNGC	9 cut(s)	246, 569, 572, 575, 749, 752, 755, 758, 761
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	239, 407
HapII	CCGG	2 cut(s)	452, 831
HhaI	GCGC	1 cut(s)	853
Hin1II	CATG	5 cut(s)	252, 412, 628, 719, 1096
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	127, 341
HinfI	GANTC	4 cut(s)	812, 953, 1028, 1046
HpaII	CCGG	2 cut(s)	452, 831
HphI	GGTGA	2 cut(s)	22, 28
Hpy166II	GTNNAC	3 cut(s)	273, 385, 457
Hpy188I	TCNGA	3 cut(s)	202, 929, 958
Hpy188III	TCNNGA	4 cut(s)	308, 364, 440, 968
Hpy8I	GTNNAC	3 cut(s)	273, 385, 457
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	489, 913, 1017
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 145, 245, 574, 754, 757, 760
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	5 cut(s)	252, 412, 628, 719, 1096
HspAI	GCGC	1 cut(s)	851
LmnI	GCTCC	2 cut(s)	298, 514
Lsp1109I	GCAGC	8 cut(s)	232, 580, 583, 586, 760, 763, 766, 769
MaeI	CTAG	1 cut(s)	944
MaeIII	GTNAC	3 cut(s)	601, 727, 1068
MhlI	GDGCHC	2 cut(s)	275, 287
MluCI	AATT	4 cut(s)	192, 482, 611, 617
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	9 cut(s)	56, 74, 315, 397, 463, 616, 667, 723, 1030
MroXI	GAANNNNTTC	1 cut(s)	963
MseI	TTAA	3 cut(s)	191, 219, 375
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	2 cut(s)	452, 831
MspR9I	CCNGG	2 cut(s)	236, 832
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	7 cut(s)	96, 145, 245, 574, 754, 757, 760
NciI	CCSGG	1 cut(s)	832
NlaIII	CATG	5 cut(s)	252, 412, 628, 719, 1096
NlaIV	GGNNCC	2 cut(s)	226, 630
NmuCI	GTSAC	2 cut(s)	601, 1068
NspI	RCATGY	1 cut(s)	252
PaeI	GCATGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	3 cut(s)	953, 1028, 1046
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	9 cut(s)	247, 570, 573, 576, 750, 753, 756, 759, 762
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
PshAI	GACNNNNGTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	226, 630
RsaI	GTAC	4 cut(s)	491, 548, 676, 1058
RsaNI	GTAC	4 cut(s)	490, 547, 675, 1057
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	191, 219, 375
SatI	GCNGC	9 cut(s)	246, 569, 572, 575, 749, 752, 755, 758, 761
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	236, 832
SduI	GDGCHC	2 cut(s)	275, 287
SmlI	CTYRAG	2 cut(s)	218, 395
SmoI	CTYRAG	2 cut(s)	218, 395
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	4 cut(s)	192, 482, 611, 617
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	88, 170, 761
SspI	AATATT	2 cut(s)	103, 826
SspMI	CTAG	1 cut(s)	944
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	234, 830
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	3 cut(s)	489, 913, 1017
TaqI	TCGA	6 cut(s)	133, 384, 439, 775, 996, 1063
TasI	AATT	4 cut(s)	192, 482, 611, 617
TatI	WGTACW	2 cut(s)	546, 674
TauI	GCSGC	1 cut(s)	763
TfiI	GAWTC	3 cut(s)	953, 1028, 1046
Tru1I	TTAA	3 cut(s)	191, 219, 375
Tru9I	TTAA	3 cut(s)	191, 219, 375
TseFI	GTSAC	2 cut(s)	601, 1068
TseI	GCWGC	8 cut(s)	245, 568, 571, 574, 748, 751, 754, 757
Tsp45I	GTSAC	2 cut(s)	601, 1068
TspDTI	ATGAA	4 cut(s)	95, 425, 518, 993
Van91I	CCANNNNNTGG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	218
VneI	GTGCAC	1 cut(s)	271
XceI	RCATGY	1 cut(s)	252
XmiI	GTMKAC	2 cut(s)	384, 456
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	1 cut(s)	944
ZrmI	AGTACT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.