Rmu_sc0035632.1_g000001

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035632.1
OG0005135
Physical Location & Seq
Reverse (-)
2 .. 563
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035632.1_g000001.1.cds

Sequence Viewer

Length: 562 bp
atgacgatcaaaggaggcacaagccaggcctgtgctgcatgcaaataccagagacgacggtgcaccaaagactgcgatctcgcccctcattttccggccgaccagcccaaaatgttccagaacgctcaccgcctctacggcgtttcaaacattatgaagatcctgaagcagactcacccggagcagaaagaagaggcgatgcgatccattatctacgaatccaacatgagagccaagtttcccgtcaccgggtgcatgggaatcatcaaccaattgacattccaactccagcaagccttcgatgagctccggtacgtccggtcccatctcgccatctgccgggaccagtgccagtaccagtacaattcaccttcgtgtccatcttctcagttgcaattagggattcaaacaaacgaccacgaggcgctgcagctctaccagcagcagtaccaatatcatcagtataactctgccgccggtagcagcgccggtggtggtgggatgtcgttgatggcgaacgagtatctggcgaatgggattaatggggtttacattgatgaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

187

Amino Acids

21.14

Weight (kDa)

8.09

Isoelectric Point (pI)

61.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 130, 474
AclWI GGATC 2 cut(s) 154, 198
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 4 cut(s) 314, 356, 362, 449
AfiI CCNNNNNNNGG 3 cut(s) 248, 249, 339
AgsI TTSAA 2 cut(s) 147, 407
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 373
AluBI AGCT 2 cut(s) 307, 433
AluI AGCT 2 cut(s) 307, 433
Alw21I GWGCWC 2 cut(s) 65, 309
Alw26I GTCTC 1 cut(s) 46
Alw44I GTGCAC 1 cut(s) 61
AlwI GGATC 2 cut(s) 154, 198
AoxI GGCC 2 cut(s) 27, 96
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 5 cut(s) 35, 427, 430, 442, 483
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 2 cut(s) 427, 488
AspS9I GGNCC 2 cut(s) 321, 343
AsuC2I CCSGG 3 cut(s) 179, 250, 341
AsuHPI GGTGA 4 cut(s) 119, 167, 238, 360
AvaII GGWCC 2 cut(s) 321, 343
BaeGI GKGCMC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 309
BauI CACGAG 1 cut(s) 419
Bbv12I GWGCWC 2 cut(s) 65, 309
BbvI GCAGC 5 cut(s) 22, 414, 442, 454, 495
BccI CCATC 4 cut(s) 333, 341, 388, 505
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 26
BcnI CCSGG 3 cut(s) 179, 250, 341
BcoDI GTCTC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 428
BfoI RGCGCY 2 cut(s) 428, 489
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 6 cut(s) 36, 428, 431, 443, 474, 484
BlsI GCNGC 6 cut(s) 37, 429, 432, 444, 475, 485
Bme1390I CCNGG 4 cut(s) 26, 179, 250, 341
Bme18I GGWCC 2 cut(s) 321, 343
BmgT120I GGNCC 2 cut(s) 321, 343
BmiI GGNNCC 2 cut(s) 323, 344
BmrFI CCNGG 4 cut(s) 26, 179, 250, 341
BmsI GCATC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 272
BpuMI CCSGG 3 cut(s) 179, 250, 341
BsaWI WCCGGW 2 cut(s) 309, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 249, 339
Bse118I RCCGGY 2 cut(s) 476, 488
Bse1I ACTGG 3 cut(s) 346, 352, 358
BseBI CCWGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 3 cut(s) 248, 249, 339
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 3 cut(s) 346, 352, 358
BseSI GKGCMC 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 5 cut(s) 22, 414, 442, 454, 495
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 29, 98
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 65, 309
BsiSI CCGG 8 cut(s) 95, 179, 249, 310, 319, 340, 477, 489
BslFI GGGAC 2 cut(s) 307, 356
BslI CCNNNNNNNGG 3 cut(s) 248, 249, 339
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 307, 356
BsnI GGCC 2 cut(s) 29, 98
Bsp1286I GDGCHC 2 cut(s) 65, 309
Bsp143I GATC 4 cut(s) 6, 76, 159, 203
BspACI CCGC 2 cut(s) 130, 474
BspANI GGCC 2 cut(s) 29, 98
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 323, 344
BspMAI CTGCAG 1 cut(s) 432
BspPI GGATC 2 cut(s) 154, 198
BsrFI RCCGGY 2 cut(s) 476, 488
BsrI ACTGG 3 cut(s) 346, 352, 358
BssAI RCCGGY 2 cut(s) 476, 488
BssMI GATC 4 cut(s) 6, 76, 159, 203
BssSI CACGAG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 40, 294
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 507
BstH2I RGCGCY 2 cut(s) 428, 489
BstHHI GCGC 2 cut(s) 427, 488
BstKTI GATC 4 cut(s) 9, 79, 162, 206
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 4 cut(s) 6, 76, 159, 203
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 3 cut(s) 35, 138, 439
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 4 cut(s) 24, 177, 248, 339
BstSFI CTRYAG 1 cut(s) 428
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 5 cut(s) 22, 414, 442, 454, 495
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BstZI CGGCCG 1 cut(s) 96
BsuRI GGCC 2 cut(s) 29, 98
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 40, 294
CfoI GCGC 2 cut(s) 427, 488
Cfr10I RCCGGY 2 cut(s) 476, 488
Cfr13I GGNCC 2 cut(s) 321, 343
Csp6I GTAC 4 cut(s) 313, 355, 361, 448
CviAII CATG 3 cut(s) 39, 226, 256
CviJI RGCY 8 cut(s) 24, 29, 98, 106, 233, 296, 307, 433
CviKI_1 RGCY 8 cut(s) 24, 29, 98, 106, 233, 296, 307, 433
CviQI GTAC 4 cut(s) 313, 355, 361, 448
DdeI CTNAG 1 cut(s) 387
DpnI GATC 4 cut(s) 8, 78, 161, 205
DpnII GATC 4 cut(s) 6, 76, 159, 203
DraIII CACNNNGTG 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 307
EclXI CGGCCG 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 321, 343
Eco52I CGGCCG 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 3 cut(s) 42, 229, 259
FaiI YATR 5 cut(s) 40, 155, 227, 257, 465
FaqI GGGAC 2 cut(s) 307, 356
FatI CATG 3 cut(s) 38, 225, 255
Fnu4HI GCNGC 6 cut(s) 36, 428, 431, 443, 474, 484
FokI GGATG 1 cut(s) 514
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 6 cut(s) 36, 428, 431, 443, 474, 484
GlaI GCGC 2 cut(s) 426, 487
GluI GCNGC 6 cut(s) 36, 428, 431, 443, 474, 484
GsuI CTGGAG 1 cut(s) 272
HaeII RGCGCY 2 cut(s) 428, 489
HaeIII GGCC 2 cut(s) 29, 98
HapII CCGG 8 cut(s) 95, 179, 249, 310, 319, 340, 477, 489
HhaI GCGC 2 cut(s) 427, 488
Hin1II CATG 3 cut(s) 42, 229, 259
Hin6I GCGC 2 cut(s) 425, 486
HinP1I GCGC 2 cut(s) 425, 486
HinfI GANTC 4 cut(s) 172, 218, 261, 403
HpaII CCGG 8 cut(s) 95, 179, 249, 310, 319, 340, 477, 489
HphI GGTGA 4 cut(s) 119, 167, 238, 360
Hpy166II GTNNAC 2 cut(s) 63, 550
Hpy188III TCNNGA 2 cut(s) 118, 163
Hpy8I GTNNAC 2 cut(s) 63, 550
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 307, 381
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 6 cut(s) 38, 42, 63, 255, 394, 430
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 138, 439
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 3 cut(s) 42, 229, 259
HspAI GCGC 2 cut(s) 425, 486
Kzo9I GATC 4 cut(s) 6, 76, 159, 203
LmnI GCTCC 2 cut(s) 181, 312
Lsp1109I GCAGC 5 cut(s) 22, 414, 442, 454, 495
LweI GCATC 1 cut(s) 189
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 244
MalI GATC 4 cut(s) 8, 78, 161, 205
MboI GATC 4 cut(s) 6, 76, 159, 203
MboII GAAGA 3 cut(s) 169, 203, 375
MfeI CAATTG 1 cut(s) 272
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 65, 309
MluCI AATT 3 cut(s) 272, 364, 395
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 2 cut(s) 246, 307
MnlI CCTC 5 cut(s) 8, 96, 143, 187, 415
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 1 cut(s) 373
MspI CCGG 8 cut(s) 95, 179, 249, 310, 319, 340, 477, 489
MspR9I CCNGG 4 cut(s) 26, 179, 250, 341
MunI CAATTG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 35, 138, 439
NciI CCSGG 3 cut(s) 179, 250, 341
NdeII GATC 4 cut(s) 6, 76, 159, 203
NlaIII CATG 3 cut(s) 42, 229, 259
NlaIV GGNNCC 2 cut(s) 323, 344
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 42
OliI CACNNNNGTG 1 cut(s) 373
PaeI GCATGC 1 cut(s) 42
PceI AGGCCT 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PfeI GAWTC 3 cut(s) 218, 261, 403
PkrI GCNGC 6 cut(s) 37, 429, 432, 444, 475, 485
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 323, 344
PspPI GGNCC 2 cut(s) 321, 343
PstI CTGCAG 1 cut(s) 432
PsuI RGATCY 1 cut(s) 159
RsaI GTAC 4 cut(s) 314, 356, 362, 449
RsaNI GTAC 4 cut(s) 313, 355, 361, 448
RseI CAYNNNNRTG 1 cut(s) 373
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 6 cut(s) 36, 428, 431, 443, 474, 484
Sau3AI GATC 4 cut(s) 6, 76, 159, 203
Sau96I GGNCC 2 cut(s) 321, 343
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 4 cut(s) 26, 179, 250, 341
SduI GDGCHC 2 cut(s) 65, 309
SetI ASST 4 cut(s) 309, 318, 373, 435
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 428
SgrAI CRCCGGYG 1 cut(s) 488
SinI GGWCC 2 cut(s) 321, 343
SmiMI CAYNNNNRTG 1 cut(s) 373
SphI GCATGC 1 cut(s) 42
Sse9I AATT 3 cut(s) 272, 364, 395
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 2 cut(s) 130, 474
SstI GAGCTC 1 cut(s) 309
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 4 cut(s) 24, 177, 248, 339
TaaI ACNGT 1 cut(s) 60
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 300
TasI AATT 3 cut(s) 272, 364, 395
TatI WGTACW 1 cut(s) 360
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 3 cut(s) 218, 261, 403
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 1 cut(s) 353
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 5 cut(s) 35, 427, 430, 442, 483
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 321, 343
VspI ATTAAT 1 cut(s) 540
XceI RCATGY 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.