Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005135

Physical Location & Seq

Genomic Coordinates Reverse (-)

56744215 .. 56746377

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGCGCCTCCAGGTTCATAAAGTGCGTGACGGTCGGCGACGGCGCCGTCGGAAAAACCTGTATGCTGATTTCCTACACCAGCAACACCTTCCCTACGGACTATGTGCCCACTGTGTTCGACAATTTCAGCGCTAATGTTGTGGTGGATGGAAGCACAGTCAACCTTGCACTGTGGGACACTGCAGGGCAGGAGGATTACAATAGATTACGACCCCTGAGCTATCGAGGTGCCGATGTGTTCATACTTGCTTTCTCTCTGATTAGCAAAGCCAGCTATGAAAATGTAGCGAAAAAGTGGATTCCTGAGCTGCGGCATTATGCACCTGGTGTTCCAATTATCCTTGCTGGAACAAAGCTCGATCTTCGTGATGATGAACAATTCTTTATGGACCATGCTGGTGCTGTTCCCATCTCCAGTGCTCAGGGAGAGGAAATGAAGAAACTGATTGGAGCTCCTTCATATATTGAATGTAGCTCAAAAACACAGCAGAATGTGAAGGCTGTTTTTGACGCAGCCATTAAGGTGGTGCTCCAGCCACCAAAGCAAAAGAAGAAAAAGAGAAGGGTACATAAGGCTTGCTCCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF627 DUF629 UCH

Protein Analysis

197

Amino Acids

21.69

Weight (kDa)

9.11

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 178	1.8e-48	Ras family
Roc	PF08477	8 - 121	3e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47870
fragaria_vesca	FvH4_5g15770 FvH4_6g49430
malus_domestica	MD06G1185700.v1.1 MD09G1045500.v1.1 MD14G1191900.v1.1 MD17G1046200.v1.1
prunus_persica	Prupe.3G273200_v2.0.a1 Prupe.5G184500_v2.0.a1
pyrus_communis	pycom14g15960
rosa_chinensis	RchiOBHm_Chr2g0169321 RchiOBHm_Chr7g0180351
rosa_laevigata	RLG00000005274 RLG00000021855
rosa_multiflora	Rmu_sc0003526.1_g000011 Rmu_sc0012846.1_g000002 Rmu_sc0035632.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082240 Rroxscaffold_3G00272960
rosa_rugosa	Rorug02G0539400 Rorug06G0432500
rosa_samantha	Rh2AG610700 Rh2BG623900 Rh2CG592200 Rh2DG634800 Rh7AG032900 Rh7BG032900 Rh7CG034800
rosa_wichuraiana	Rw2G050630 Rw7G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB1I	GGYRCC	2 cut(s)	44, 230
AciI	CCGC	1 cut(s)	313
AcyI	GRCGYC	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	570
AfeI	AGCGCT	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	11, 325
AluBI	AGCT	6 cut(s)	222, 276, 310, 358, 455, 477
AluI	AGCT	6 cut(s)	222, 276, 310, 358, 455, 477
Alw21I	GWGCWC	3 cut(s)	424, 457, 534
Aor51HI	AGCGCT	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	310, 515
AspLEI	GCGC	3 cut(s)	8, 47, 134
AspS9I	GGNCC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	2 cut(s)	44, 230
BanII	GRGCYC	1 cut(s)	457
Bbv12I	GWGCWC	3 cut(s)	424, 457, 534
BbvI	GCAGC	2 cut(s)	297, 527
BccI	CCATC	2 cut(s)	143, 419
BceAI	ACGGC	2 cut(s)	32, 58
BciT130I	CCWGG	2 cut(s)	13, 327
BfmI	CTRYAG	1 cut(s)	183
BfoI	RGCGCY	3 cut(s)	9, 48, 135
BisI	GCNGC	3 cut(s)	311, 314, 516
BlsI	GCNGC	3 cut(s)	312, 315, 517
Bme1390I	CCNGG	2 cut(s)	13, 327
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	46, 232
BmrFI	CCNGG	2 cut(s)	13, 327
BpmI	CTGGAG	2 cut(s)	400, 518
Bpu10I	CCTNAGC	3 cut(s)	218, 306, 423
BsaHI	GRCGYC	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	13, 327
BseGI	GGATG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	209, 297, 437
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	297, 527
Bsh1285I	CGRYCG	1 cut(s)	36
BshNI	GGYRCC	2 cut(s)	44, 230
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	3 cut(s)	424, 457, 534
BslFI	GGGAC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	191
Bsp1286I	GDGCHC	4 cut(s)	111, 424, 457, 534
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	1 cut(s)	313
BspCNI	CTCAG	3 cut(s)	210, 298, 436
BspLI	GGNNCC	2 cut(s)	46, 232
BspMAI	CTGCAG	1 cut(s)	187
BspT107I	GGYRCC	2 cut(s)	44, 230
BsrI	ACTGG	1 cut(s)	417
BssMI	GATC	1 cut(s)	361
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	13, 327
Bst4CI	ACNGT	4 cut(s)	34, 115, 160, 174
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	274, 580
BstDEI	CTNAG	3 cut(s)	218, 306, 423
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	3 cut(s)	9, 48, 135
BstHHI	GCGC	3 cut(s)	8, 47, 134
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 544
BstNI	CCWGG	2 cut(s)	13, 327
BstSCI	CCNGG	2 cut(s)	11, 325
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	297, 527
BstXI	CCANNNNNNTGG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	4 cut(s)	111, 170, 180, 424
Cac8I	GCNNGC	2 cut(s)	274, 580
CfoI	GCGC	3 cut(s)	8, 47, 134
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	1 cut(s)	521
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	3 cut(s)	218, 306, 423
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraIII	CACNNNGTG	1 cut(s)	329
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	391
Eco47III	AGCGCT	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	11, 325
EcoT38I	GRGCYC	1 cut(s)	457
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	1 cut(s)	398
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	311, 314, 516
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	311, 314, 516
GlaI	GCGC	3 cut(s)	7, 46, 133
GluI	GCNGC	3 cut(s)	311, 314, 516
GsuI	CTGGAG	2 cut(s)	400, 518
HaeII	RGCGCY	3 cut(s)	9, 48, 135
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	3 cut(s)	8, 47, 134
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	3 cut(s)	6, 45, 132
HinP1I	GCGC	3 cut(s)	6, 45, 132
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	53, 261
Hpy188III	TCNNGA	2 cut(s)	305, 368
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	44, 53
HpyAV	CCTTC	4 cut(s)	100, 468, 493, 558
HpyCH4III	ACNGT	4 cut(s)	34, 115, 160, 174
HpyCH4V	TGCA	3 cut(s)	170, 185, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 544
HpyF3I	CTNAG	3 cut(s)	218, 306, 423
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	3 cut(s)	6, 45, 132
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	4 cut(s)	452, 460, 537, 587
Lsp1109I	GCAGC	2 cut(s)	297, 527
MabI	ACCWGGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	3 cut(s)	356, 451, 565
MhlI	GDGCHC	4 cut(s)	111, 424, 457, 534
MluCI	AATT	3 cut(s)	124, 336, 380
Mly113I	GGCGCC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	4 cut(s)	19, 187, 221, 424
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	2 cut(s)	399, 524
MspR9I	CCNGG	2 cut(s)	13, 327
MvaI	CCWGG	2 cut(s)	13, 327
MwoI	GCNNNNNNNGC	2 cut(s)	273, 544
NarI	GGCGCC	1 cut(s)	45
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	46, 232
NmuCI	GTSAC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	312, 315, 517
PluTI	GGCGCC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	457
Psp6I	CCWGG	2 cut(s)	11, 325
PspGI	CCWGG	2 cut(s)	11, 325
PspN4I	GGNNCC	2 cut(s)	46, 232
PspPI	GGNCC	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	2 cut(s)	399, 524
SacI	GAGCTC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	3 cut(s)	311, 314, 516
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	13, 327
SduI	GDGCHC	4 cut(s)	111, 424, 457, 534
SexAI	ACCWGGT	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	183
SfoI	GGCGCC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	399, 524
Sse9I	AATT	3 cut(s)	124, 336, 380
SsiI	CCGC	1 cut(s)	313
SspDI	GGCGCC	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	11, 325
TaaI	ACNGT	4 cut(s)	34, 115, 160, 174
TaqI	TCGA	3 cut(s)	120, 226, 360
TasI	AATT	3 cut(s)	124, 336, 380
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	4 cut(s)	118, 177, 187, 424
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	310, 515
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	6 cut(s)	7, 232, 294, 390, 450, 452
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	4 cut(s)	118, 177, 187, 424
VpaK11BI	GGWCC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.