AT3G48340

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
17897506 .. 17899351
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48340.1

Sequence Viewer

Length: 1086 bp
ATGAAGAAACTTCTTTTGATATTTCTCTTTTCTCTTGTCATTCTCCAAACTGCTTGTGGATTCGATTACGACGACAAGGAAATAGAAAGCGAAGAGGGCTTATCAACGCTTTATGATAGATGGAGGAGCCACCACTCCGTTCCTAGGAGTCTAAATGAAAGGGAGAAGAGATTCAACGTTTTCAGACACAATGTCATGCATGTCCACAATACCAACAAGAAGAACCGATCCTACAAACTTAAGCTCAACAAGTTTGCAGATTTAACAATTAATGAGTTCAAGAATGCATACACCGGTTCCAACATCAAGCATCACAGAATGTTGCAAGGACCAAAACGCGGCTCAAAACAGTTCATGTATGATCATGAGAATTTATCCAAATTACCGTCCTCCGTTGATTGGAGAAAGAAAGGTGCTGTCACTGAAATCAAGAATCAAGGAAAATGTGGAAGTTGTTGGGCATTCTCTACCGTAGCAGCTGTTGAGGGAATCAACAAGATCAAGACTAACAAACTGGTCTCACTGTCTGAACAAGAACTAGTGGATTGTGATACTAAGCAGAATGAAGGTTGTAACGGAGGTCTTATGGAGATTGCATTTGAATTCATCAAGAAGAACGGTGGTATCACCACTGAAGATAGCTATCCTTATGAAGGTATCGATGGAAAATGCGACGCTTCAAAGGATAACGGCGTGCTTGTGACGATAGATGGGCATGAAGATGTACCCGAAAACGACGAAAATGCTCTTCTTAAGGCTGTTGCAAACCAACCTGTATCTGTTGCAATTGATGCTGGAAGTTCAGATTTCCAGTTTTATTCAGAGGGAGTGTTTACGGGATCTTGTGGAACAGAGCTGAACCATGGTGTGGCAGCGGTCGGGTATGGATCTGAGAGGGGGAAAAAGTATTGGATAGTGAGAAACTCATGGGGAGCTGAATGGGGAGAGGGAGGCTATATAAAGATTGAAAGAGAGATTGATGAACCGGAAGGGCGTTGCGGTATTGCGATGGAGGCATCGTATCCGATCAAGCTATCGTCGTCTAATCCTACCCCGAAAGACGGTGATGTCAAAGATGAGCTCTAG

Protein Analysis

361

Amino Acids

40.37

Weight (kDa)

5.99

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 93 1.2e-12 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 128 - 343 8.1e-88 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1067
AccB7I CCANNNNNTGG 1 cut(s) 868
AccII CGCG 1 cut(s) 339
AciI CCGC 3 cut(s) 339, 875, 999
AclI AACGTT 1 cut(s) 177
AclWI GGATC 3 cut(s) 222, 847, 895
AcsI RAATTY 2 cut(s) 370, 602
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 1 cut(s) 726
AfiI CCNNNNNNNGG 6 cut(s) 144, 338, 399, 653, 868, 1061
AflII CTTAAG 2 cut(s) 239, 752
AgeI ACCGGT 1 cut(s) 293
AgsI TTSAA 5 cut(s) 175, 280, 602, 681, 968
AhdI GACNNNNNGTC 1 cut(s) 191
AhlI ACTAGT 1 cut(s) 538
AluBI AGCT 7 cut(s) 244, 479, 642, 856, 935, 1033, 1081
AluI AGCT 7 cut(s) 244, 479, 642, 856, 935, 1033, 1081
Alw21I GWGCWC 1 cut(s) 1083
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 3 cut(s) 222, 847, 895
ApeKI GCWGC 2 cut(s) 476, 872
ApoI RAATTY 2 cut(s) 370, 602
AseI ATTAAT 1 cut(s) 270
AsiGI ACCGGT 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 170
AspA2I CCTAGG 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 619, 1076
AvaII GGWCC 1 cut(s) 329
AvrII CCTAGG 1 cut(s) 143
BaeI ACNNNNGTAYC 2 cut(s) 607, 640
BanII GRGCYC 1 cut(s) 1083
Bbv12I GWGCWC 1 cut(s) 1083
BbvI GCAGC 2 cut(s) 488, 884
BccI CCATC 4 cut(s) 114, 656, 704, 1003
BceAI ACGGC 1 cut(s) 706
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BciVI GTATCC 1 cut(s) 1032
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 523
BcuI ACTAGT 1 cut(s) 538
BfaI CTAG 3 cut(s) 144, 539, 1084
BfrI CTTAAG 2 cut(s) 239, 752
BfuI GTATCC 1 cut(s) 1032
BisI GCNGC 3 cut(s) 340, 477, 873
BlnI CCTAGG 1 cut(s) 143
BlsI GCNGC 3 cut(s) 341, 478, 874
Bme18I GGWCC 1 cut(s) 329
BmeRI GACNNNNNGTC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 128, 298
BmsI GCATC 3 cut(s) 319, 781, 1025
Bsa29I ATCGAT 1 cut(s) 660
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 2 cut(s) 143, 862
BsaWI WCCGGW 2 cut(s) 293, 985
BsaXI ACNNNNNCTCC 2 cut(s) 1004, 1034
Bsc4I CCNNNNNNNGG 6 cut(s) 144, 338, 399, 653, 868, 1061
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 519, 811
Bse8I GATNNNNATC 1 cut(s) 642
BseCI ATCGAT 1 cut(s) 660
BseDI CCNNGG 2 cut(s) 143, 862
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 6 cut(s) 144, 338, 399, 653, 868, 1061
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 2 cut(s) 519, 811
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 2 cut(s) 488, 884
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 879
BshTI ACCGGT 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 660
BsiEI CGRYCG 1 cut(s) 879
BsiHKAI GWGCWC 1 cut(s) 1083
BsiSI CCGG 2 cut(s) 294, 986
BslI CCNNNNNNNGG 6 cut(s) 144, 338, 399, 653, 868, 1061
BsmAI GTCTC 1 cut(s) 523
BsmI GAATGC 2 cut(s) 289, 461
Bso31I GGTCTC 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 1083
Bsp143I GATC 6 cut(s) 227, 361, 498, 839, 887, 1026
Bsp19I CCATGG 1 cut(s) 862
BspACI CCGC 3 cut(s) 339, 875, 999
BspCNI CTCAG 1 cut(s) 883
BspDI ATCGAT 1 cut(s) 660
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 128, 298
BspPI GGATC 3 cut(s) 222, 847, 895
BspQI GCTCTTC 1 cut(s) 753
BspTI CTTAAG 2 cut(s) 239, 752
BspTNI GGTCTC 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 2 cut(s) 519, 811
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 143, 862
BssMI GATC 6 cut(s) 227, 361, 498, 839, 887, 1026
BssT1I CCWWGG 2 cut(s) 143, 862
Bst4CI ACNGT 6 cut(s) 351, 387, 472, 525, 620, 1064
Bst6I CTCTTC 3 cut(s) 87, 161, 753
BstAFI CTTAAG 2 cut(s) 239, 752
BstAPI GCANNNNNTGC 1 cut(s) 791
BstC8I GCNNGC 1 cut(s) 695
BstDEI CTNAG 2 cut(s) 555, 891
BstDSI CCRYGG 1 cut(s) 862
BstENI CCTNNNNNAGG 1 cut(s) 651
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 6 cut(s) 230, 364, 501, 842, 890, 1029
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 6 cut(s) 227, 361, 498, 839, 887, 1026
BstMCI CGRYCG 1 cut(s) 879
BstMWI GCNNNNNNNGC 3 cut(s) 96, 791, 1013
BstNSI RCATGY 1 cut(s) 203
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 488, 884
BstX2I RGATCY 2 cut(s) 839, 887
BstYI RGATCY 2 cut(s) 839, 887
Bsu15I ATCGAT 1 cut(s) 660
BsuI GTATCC 1 cut(s) 1032
BsuTUI ATCGAT 1 cut(s) 660
BtgI CCRYGG 1 cut(s) 862
BtgZI GCGATG 1 cut(s) 1022
BtsIMutI CAGTG 3 cut(s) 420, 521, 630
Cac8I GCNNGC 1 cut(s) 695
CciI TCATGA 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 329
ClaI ATCGAT 1 cut(s) 660
CseI GACGC 1 cut(s) 683
Csp6I GTAC 1 cut(s) 725
CspAI ACCGGT 1 cut(s) 293
CviAII CATG 7 cut(s) 196, 200, 355, 365, 716, 863, 927
CviQI GTAC 1 cut(s) 725
DdeI CTNAG 2 cut(s) 555, 891
DpnI GATC 6 cut(s) 229, 363, 500, 841, 889, 1028
DpnII GATC 6 cut(s) 227, 361, 498, 839, 887, 1026
DrdI GACNNNNNNGTC 1 cut(s) 1067
DriI GACNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 1067
Eam1104I CTCTTC 3 cut(s) 87, 161, 753
Eam1105I GACNNNNNGTC 1 cut(s) 191
EarI CTCTTC 3 cut(s) 87, 161, 753
Ecl136II GAGCTC 1 cut(s) 1081
Eco130I CCWWGG 2 cut(s) 143, 862
Eco24I GRGCYC 1 cut(s) 1083
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 1081
Eco57I CTGAAG 1 cut(s) 654
EcoICRI GAGCTC 1 cut(s) 1081
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoRI GAATTC 1 cut(s) 602
EcoT14I CCWWGG 2 cut(s) 143, 862
EcoT22I ATGCAT 2 cut(s) 201, 289
EcoT38I GRGCYC 1 cut(s) 1083
ErhI CCWWGG 2 cut(s) 143, 862
FaeI CATG 7 cut(s) 199, 203, 358, 368, 719, 866, 930
FatI CATG 7 cut(s) 195, 199, 354, 364, 715, 862, 926
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 340, 477, 873
FriOI GRGCYC 1 cut(s) 1083
Fsp4HI GCNGC 3 cut(s) 340, 477, 873
FspBI CTAG 3 cut(s) 144, 539, 1084
GluI GCNGC 3 cut(s) 340, 477, 873
HapII CCGG 2 cut(s) 294, 986
HgaI GACGC 1 cut(s) 683
Hin1II CATG 7 cut(s) 199, 203, 358, 368, 719, 866, 930
HinfI GANTC 5 cut(s) 60, 148, 171, 433, 489
HpaII CCGG 2 cut(s) 294, 986
HphI GGTGA 2 cut(s) 619, 1076
Hpy166II GTNNAC 2 cut(s) 205, 834
Hpy188I TCNGA 6 cut(s) 185, 529, 805, 823, 892, 1026
Hpy188III TCNNGA 5 cut(s) 280, 365, 430, 502, 610
Hpy8I GTNNAC 2 cut(s) 205, 834
Hpy99I CGWCG 4 cut(s) 74, 677, 740, 1042
HpyAV CCTTC 3 cut(s) 560, 647, 983
HpyCH4III ACNGT 6 cut(s) 351, 387, 472, 525, 620, 1064
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 7 cut(s) 199, 257, 287, 325, 596, 764, 785
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 791, 1013
HpyF3I CTNAG 2 cut(s) 555, 891
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 7 cut(s) 199, 203, 358, 368, 719, 866, 930
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 6 cut(s) 227, 361, 498, 839, 887, 1026
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 2 cut(s) 126, 932
LpnPI CCDG 6 cut(s) 307, 500, 780, 786, 824, 999
Lsp1109I GCAGC 2 cut(s) 488, 884
LweI GCATC 3 cut(s) 319, 781, 1025
MaeI CTAG 3 cut(s) 144, 539, 1084
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 3 cut(s) 418, 572, 700
MalI GATC 6 cut(s) 229, 363, 500, 841, 889, 1028
MboI GATC 6 cut(s) 227, 361, 498, 839, 887, 1026
MboII GAAGA 8 cut(s) 16, 104, 178, 232, 625, 647, 731, 740
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 2 cut(s) 839, 887
MhlI GDGCHC 1 cut(s) 1083
MluCI AATT 5 cut(s) 267, 370, 380, 602, 786
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 324
Mph1103I ATGCAT 2 cut(s) 201, 289
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 4 cut(s) 240, 263, 270, 753
MslI CAYNNNNRTG 1 cut(s) 720
MspA1I CMGCKG 2 cut(s) 479, 875
MspCI CTTAAG 2 cut(s) 239, 752
MspI CCGG 2 cut(s) 294, 986
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 2 cut(s) 289, 461
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 3 cut(s) 96, 791, 1013
NcoI CCATGG 1 cut(s) 862
NdeII GATC 6 cut(s) 227, 361, 498, 839, 887, 1026
NlaIII CATG 7 cut(s) 199, 203, 358, 368, 719, 866, 930
NlaIV GGNNCC 2 cut(s) 128, 298
NmuCI GTSAC 2 cut(s) 418, 700
NsiI ATGCAT 2 cut(s) 201, 289
NspI RCATGY 1 cut(s) 203
PagI TCATGA 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 2 cut(s) 289, 461
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 4 cut(s) 60, 171, 433, 489
PflMI CCANNNNNTGG 1 cut(s) 868
PinAI ACCGGT 1 cut(s) 293
PkrI GCNGC 3 cut(s) 341, 478, 874
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 1083
Psp1406I AACGTT 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 128, 298
PspPI GGNCC 1 cut(s) 329
PsrI GAACNNNNNNTAC 2 cut(s) 215, 247
PsuI RGATCY 2 cut(s) 839, 887
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 1 cut(s) 726
RsaNI GTAC 1 cut(s) 725
RseI CAYNNNNRTG 1 cut(s) 720
SacI GAGCTC 1 cut(s) 1083
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 4 cut(s) 240, 263, 270, 753
SatI GCNGC 3 cut(s) 340, 477, 873
Sau3AI GATC 6 cut(s) 227, 361, 498, 839, 887, 1026
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 1083
SfaNI GCATC 3 cut(s) 319, 781, 1025
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 2 cut(s) 239, 752
SmoI CTYRAG 2 cut(s) 239, 752
SpeI ACTAGT 1 cut(s) 538
Sse9I AATT 5 cut(s) 267, 370, 380, 602, 786
SsiI CCGC 3 cut(s) 339, 875, 999
SspMI CTAG 3 cut(s) 144, 539, 1084
SstI GAGCTC 1 cut(s) 1083
StyI CCWWGG 2 cut(s) 143, 862
TaaI ACNGT 6 cut(s) 351, 387, 472, 525, 620, 1064
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 63, 660
TasI AATT 5 cut(s) 267, 370, 380, 602, 786
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 4 cut(s) 60, 171, 433, 489
Tru1I TTAA 4 cut(s) 240, 263, 270, 753
Tru9I TTAA 4 cut(s) 240, 263, 270, 753
TscAI CASTG 3 cut(s) 427, 528, 637
TseFI GTSAC 2 cut(s) 418, 700
TseI GCWGC 2 cut(s) 476, 872
Tsp45I GTSAC 2 cut(s) 418, 700
TspDTI ATGAA 8 cut(s) 17, 171, 343, 579, 595, 666, 732, 996
TspGWI ACGGA 3 cut(s) 127, 382, 591
TspRI CASTG 3 cut(s) 427, 528, 637
Van91I CCANNNNNTGG 1 cut(s) 868
Vha464I CTTAAG 2 cut(s) 239, 752
VpaK11BI GGWCC 1 cut(s) 329
VspI ATTAAT 1 cut(s) 270
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 2 cut(s) 370, 602
XceI RCATGY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XmaJI CCTAGG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 3 cut(s) 144, 539, 1084
Zsp2I ATGCAT 2 cut(s) 201, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.