Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Reverse (-)

48780580 .. 48795002

Gene Structure 14423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG322200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAGAAACGCAGCGGTGATGAGCAACCAATACGAGGCAATTGATTCCGGCGTACCAGAAATGGCCTGGATGTGGATTCTGGTCGTCGGGGAAGTGCAGGACATCGGTGGACCACGTGTCAAATCCCCAGAGCATCAGATAAAAGAGCATAAAGAGAAGGGAGAGTCTGACAAAGAAGAGGGACTACAGAGAGGGAAGGAGGGAAGAGCAGCCCCACAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.24

Weight (kDa)

5.31

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AcvI	CACGTG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	34, 72
AflIII	ACRYGT	1 cut(s)	115
AhdI	GACNNNNNGTC	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	11, 209
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	110
BarI	GAAGNNNNNNTAC	2 cut(s)	168, 200
BbrPI	CACGTG	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	23, 221
BciT130I	CCWGG	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	12, 210
BlsI	GCNGC	2 cut(s)	13, 211
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	110
BmeRI	GACNNNNNGTC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 72
BseBI	CCWGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	34, 72
BseXI	GCAGC	2 cut(s)	23, 221
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	34, 72
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	65
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	65
BspQI	GCTCTTC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	67
Bst6I	CTCTTC	2 cut(s)	171, 199
BstBAI	YACGTR	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	23, 221
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	53
CviJI	RGCY	2 cut(s)	65, 212
CviKI_1	RGCY	2 cut(s)	65, 212
CviQI	GTAC	1 cut(s)	53
DriI	GACNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	2 cut(s)	171, 199
Eam1105I	GACNNNNNGTC	1 cut(s)	116
EarI	CTCTTC	2 cut(s)	171, 199
Eco47I	GGWCC	1 cut(s)	110
Eco72I	CACGTG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	65
FaiI	YATR	2 cut(s)	150, 223
FaqI	GGGAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	12, 210
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	12, 210
GluI	GCNGC	2 cut(s)	12, 210
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	48
HinfI	GANTC	3 cut(s)	44, 76, 164
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	138, 169
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	151, 190
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	97
HpySE526I	ACGT	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	199
LpnPI	CCDG	7 cut(s)	52, 61, 65, 69, 79, 83, 141
Lsp1109I	GCAGC	2 cut(s)	23, 221
LweI	GCATC	1 cut(s)	142
MaeII	ACGT	1 cut(s)	115
MboII	GAAGA	2 cut(s)	188, 216
MfeI	CAATTG	1 cut(s)	39
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	28, 172, 185, 193
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	67
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	44, 76
PkrI	GCNGC	2 cut(s)	13, 211
PleI	GAGTC	1 cut(s)	172
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	65
PspCI	CACGTG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	110
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	199
SatI	GCNGC	2 cut(s)	12, 210
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	110
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	65
TaiI	ACGT	1 cut(s)	118
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	44, 76
TseI	GCWGC	2 cut(s)	11, 209
VpaK11BI	GGWCC	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.