Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Reverse (-)

3984493 .. 3986628

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAAATGAAGAAGTTTCTTTTGGTTGCTGCTCTTTCACTTGCTTTGGTGATTGGGGTGGCTGAGAGCTTTGATTACCTTGAGAGAGACTTGGCCTCGGAGGACAGCTTGTGGGATTTGTACGAGAGGTGGAGGAGCCACCACACGGTTTCGAGGAGCCTTGATGAGAAGCACAAGCGGTTCAATGTGTTCAAGGAGAATGTCAAGCATGTCCACAACAGCAACAAAGAAGACAAGCCTTATAAGCTGAAACTGAACAAGTATGCAGACATGACCAACCACGAGTTCAGGAGTGCTTATGCTGGCTCCAAGGTTAAGCATCATAGGATGCTCCGAGGCCAGCGAAGCGGTGATGGGGCGTTCAGGTACGAGAACGTTGCCAGTGTCCCGCCGTCTGTTGACTGGAGAAAGGACGGTGCTGTCACACCAGTTAAGGATCAAGGCCAATGTGGTAGTTGCTGGGCGTTTTCAACGGTTGTAGCTGTTGAGGGCATCAACCAGATTAAGACAAAGAACCTTGTTTCATTATCGGAGCAAGAGTTAGTTGACTGTGACACTAAAGAGAATCAAGGATGCAATGGAGGGCTAATGGAATTGGCGTTTGAATTCATCAAACAAAGGGGAGGCCTAACGACTGAGACAAACTACCCTTACAAAGCTACTGATTCAAAATGCAATGCTGCAAAGGAAAACACTCCAGCAGTGTCAATAGATGGCCATGAATCCGTGCCTGCTAATAATGAAGACGAATTGCTCAAAGCAGTTGCAAACCAACCTATCTCTGTTGCCATAGACGCTGGAGGTCCTGATTTTCAATTCTATTCAGAGGGAGTATATGATGGAAAATGTGGCACTGAGCTGGATCACGGAGTTGCAATTGTGGGATACGGAACAACACTCGATGGAACCAAGTACTGGATAGTCAAGAACTCCTGGGGCGCTGAGTGGGGAGAGAAGGGTTACATAAGGATGGCTCGTGGCATCGCCGAGAAGGAGGGAAAATGTGGAATAGCAATGGAGGCCTCGTACCCCATCAAGAACTCTTCAACCAATCCTACAGGACCATCTACCTCCTACCCTAAGGATGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

365

Amino Acids

40.39

Weight (kDa)

5.98

Isoelectric Point (pI)

25.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	41 - 96	2.1e-14	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	129 - 345	6.3e-87	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AasI	GACNNNNNNGTC	1 cut(s)	419
AccB7I	CCANNNNNTGG	1 cut(s)	915
AciI	CCGC	3 cut(s)	178, 348, 389
AclI	AACGTT	1 cut(s)	375
AclWI	GGATC	2 cut(s)	444, 870
AcoI	YGGCCR	1 cut(s)	715
AcsI	RAATTY	1 cut(s)	605
AfaI	GTAC	4 cut(s)	122, 368, 914, 1028
AfiI	CCNNNNNNNGG	2 cut(s)	145, 915
AgsI	TTSAA	7 cut(s)	184, 193, 471, 605, 669, 815, 1047
AjnI	CCWGG	1 cut(s)	932
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 269, 301
AluBI	AGCT	6 cut(s)	69, 108, 247, 482, 659, 859
AluI	AGCT	6 cut(s)	69, 108, 247, 482, 659, 859
Alw26I	GTCTC	2 cut(s)	81, 632
AlwI	GGATC	2 cut(s)	444, 870
AoxI	GGCC	6 cut(s)	93, 337, 442, 625, 715, 1020
ApeKI	GCWGC	2 cut(s)	29, 680
ApoI	RAATTY	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	941
AspS9I	GGNCC	2 cut(s)	803, 1061
AsuHPI	GGTGA	2 cut(s)	61, 362
AvaII	GGWCC	2 cut(s)	803, 1061
AxyI	CCTNAGG	1 cut(s)	1080
BalI	TGGCCA	1 cut(s)	717
BauI	CACGAG	2 cut(s)	281, 975
BbsI	GAAGAC	2 cut(s)	237, 750
BbvI	GCAGC	2 cut(s)	16, 667
BccI	CCATC	7 cut(s)	347, 707, 833, 896, 964, 1040, 1072
BceAI	ACGGC	1 cut(s)	376
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	1 cut(s)	934
BciVI	GTATCC	1 cut(s)	878
BcoDI	GTCTC	2 cut(s)	81, 632
BfmI	CTRYAG	1 cut(s)	1056
BfoI	RGCGCY	1 cut(s)	942
BfuI	GTATCC	1 cut(s)	878
BisI	GCNGC	2 cut(s)	30, 681
BlsI	GCNGC	2 cut(s)	31, 682
BmcAI	AGTACT	1 cut(s)	914
Bme1390I	CCNGG	1 cut(s)	934
Bme18I	GGWCC	2 cut(s)	803, 1061
BmgT120I	GGNCC	2 cut(s)	803, 1061
BmiI	GGNNCC	4 cut(s)	137, 158, 307, 907
BmrFI	CCNGG	1 cut(s)	934
BmsI	GCATC	5 cut(s)	318, 328, 501, 563, 990
BpiI	GAAGAC	2 cut(s)	237, 750
BpmI	CTGGAG	3 cut(s)	424, 681, 819
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	96, 309, 334, 933
BsaXI	ACNNNNNCTCC	4 cut(s)	524, 554, 1010, 1040
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 915
Bse1I	ACTGG	4 cut(s)	381, 407, 428, 920
Bse21I	CCTNAGG	1 cut(s)	1080
Bse3DI	GCAATG	3 cut(s)	583, 682, 1020
BseBI	CCWGG	1 cut(s)	934
BseDI	CCNNGG	4 cut(s)	96, 309, 334, 933
BseGI	GGATG	4 cut(s)	333, 578, 975, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	145, 915
BseMI	GCAATG	3 cut(s)	583, 682, 1020
BseMII	CTCAG	4 cut(s)	54, 627, 846, 933
BseNI	ACTGG	4 cut(s)	381, 407, 428, 920
BseRI	GAGGAG	2 cut(s)	148, 169
BseXI	GCAGC	2 cut(s)	16, 667
BseYI	CCCAGC	1 cut(s)	459
BshFI	GGCC	6 cut(s)	95, 339, 444, 627, 717, 1022
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	145, 915
BsmAI	GTCTC	2 cut(s)	81, 632
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	6 cut(s)	95, 339, 444, 627, 717, 1022
Bsp143I	GATC	2 cut(s)	436, 862
BspACI	CCGC	3 cut(s)	178, 348, 389
BspANI	GGCC	6 cut(s)	95, 339, 444, 627, 717, 1022
BspCNI	CTCAG	4 cut(s)	55, 628, 847, 934
BspLI	GGNNCC	4 cut(s)	137, 158, 307, 907
BspPI	GGATC	2 cut(s)	444, 870
BsrDI	GCAATG	3 cut(s)	583, 682, 1020
BsrI	ACTGG	4 cut(s)	381, 407, 428, 920
BssECI	CCNNGG	4 cut(s)	96, 309, 334, 933
BssMI	GATC	2 cut(s)	436, 862
BssSI	CACGAG	2 cut(s)	281, 975
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	2 cut(s)	281, 975
Bst2UI	CCWGG	1 cut(s)	934
Bst4CI	ACNGT	4 cut(s)	148, 416, 475, 551
Bst6I	CTCTTC	1 cut(s)	1048
BstC8I	GCNNGC	3 cut(s)	304, 341, 732
BstDEI	CTNAG	5 cut(s)	63, 636, 855, 942, 1080
BstF5I	GGATG	4 cut(s)	333, 578, 975, 1090
BstH2I	RGCGCY	1 cut(s)	942
BstHHI	GCGC	1 cut(s)	941
BstKTI	GATC	2 cut(s)	439, 865
BstMAI	GTCTC	2 cut(s)	81, 632
BstMBI	GATC	2 cut(s)	436, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 345, 794, 1019
BstNI	CCWGG	1 cut(s)	934
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	932
BstSFI	CTRYAG	1 cut(s)	1056
BstV1I	GCAGC	2 cut(s)	16, 667
BstV2I	GAAGAC	2 cut(s)	237, 750
Bsu36I	CCTNAGG	1 cut(s)	1080
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	6 cut(s)	95, 339, 444, 627, 717, 1022
BtgZI	GCGATG	1 cut(s)	967
BtsCI	GGATG	4 cut(s)	333, 578, 975, 1090
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	3 cut(s)	388, 708, 852
Cac8I	GCNNGC	3 cut(s)	304, 341, 732
CfoI	GCGC	1 cut(s)	941
Cfr13I	GGNCC	2 cut(s)	803, 1061
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	4 cut(s)	121, 367, 913, 1027
CviAII	CATG	3 cut(s)	209, 271, 719
CviQI	GTAC	4 cut(s)	121, 367, 913, 1027
DdeI	CTNAG	5 cut(s)	63, 636, 855, 942, 1080
DpnI	GATC	2 cut(s)	438, 864
DpnII	GATC	2 cut(s)	436, 862
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	715
Eam1104I	CTCTTC	1 cut(s)	1048
EarI	CTCTTC	1 cut(s)	1048
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	2 cut(s)	627, 1022
Eco47I	GGWCC	2 cut(s)	803, 1061
Eco81I	CCTNAGG	1 cut(s)	1080
EcoO109I	RGGNCCY	1 cut(s)	803
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	932
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	3 cut(s)	212, 274, 722
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	3 cut(s)	208, 270, 718
FauI	CCCGC	1 cut(s)	396
Fnu4HI	GCNGC	2 cut(s)	30, 681
FokI	GGATG	3 cut(s)	340, 585, 982
Fsp4HI	GCNGC	2 cut(s)	30, 681
GlaI	GCGC	1 cut(s)	940
GluI	GCNGC	2 cut(s)	30, 681
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	3 cut(s)	424, 681, 819
HaeII	RGCGCY	1 cut(s)	942
HaeIII	GGCC	6 cut(s)	95, 339, 444, 627, 717, 1022
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	1 cut(s)	941
Hin1II	CATG	3 cut(s)	212, 274, 722
Hin6I	GCGC	1 cut(s)	939
HinP1I	GCGC	1 cut(s)	939
HincII	GTYRAC	2 cut(s)	400, 547
HindII	GTYRAC	2 cut(s)	400, 547
HinfI	GANTC	3 cut(s)	565, 665, 722
HphI	GGTGA	2 cut(s)	61, 362
Hpy166II	GTNNAC	3 cut(s)	214, 400, 547
Hpy188I	TCNGA	4 cut(s)	100, 335, 532, 826
Hpy188III	TCNNGA	4 cut(s)	289, 806, 925, 1036
Hpy8I	GTNNAC	3 cut(s)	214, 400, 547
HpyAV	CCTTC	2 cut(s)	949, 985
HpyCH4III	ACNGT	4 cut(s)	148, 416, 475, 551
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	6 cut(s)	266, 576, 675, 683, 767, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 345, 794, 1019
HpyF3I	CTNAG	5 cut(s)	63, 636, 855, 942, 1080
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	3 cut(s)	212, 274, 722
HspAI	GCGC	1 cut(s)	939
Kzo9I	GATC	2 cut(s)	436, 862
LmnI	GCTCC	5 cut(s)	135, 156, 311, 336, 532
Lsp1109I	GCAGC	2 cut(s)	16, 667
LweI	GCATC	5 cut(s)	318, 328, 501, 563, 990
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	3 cut(s)	421, 551, 959
MalI	GATC	2 cut(s)	438, 864
MboI	GATC	2 cut(s)	436, 862
MboII	GAAGA	4 cut(s)	22, 242, 755, 1035
MfeI	CAATTG	1 cut(s)	876
MlsI	TGGCCA	1 cut(s)	717
MluCI	AATT	5 cut(s)	593, 605, 749, 815, 876
MluNI	TGGCCA	1 cut(s)	717
Mox20I	TGGCCA	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	717
MseI	TTAA	3 cut(s)	315, 432, 504
MslI	CAYNNNNRTG	1 cut(s)	968
Msp20I	TGGCCA	1 cut(s)	717
MspR9I	CCNGG	1 cut(s)	934
MunI	CAATTG	1 cut(s)	876
MvaI	CCWGG	1 cut(s)	934
MwoI	GCNNNNNNNGC	4 cut(s)	244, 345, 794, 1019
NdeII	GATC	2 cut(s)	436, 862
NlaIII	CATG	3 cut(s)	212, 274, 722
NlaIV	GGNNCC	4 cut(s)	137, 158, 307, 907
NmeAIII	GCCGAG	1 cut(s)	1012
NmuCI	GTSAC	2 cut(s)	421, 551
NspI	RCATGY	1 cut(s)	212
PceI	AGGCCT	2 cut(s)	627, 1022
PfeI	GAWTC	3 cut(s)	565, 665, 722
PflMI	CCANNNNNTGG	1 cut(s)	915
PkrI	GCNGC	2 cut(s)	31, 682
PpuMI	RGGWCCY	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	803
Psp6I	CCWGG	1 cut(s)	932
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	932
PspN4I	GGNNCC	4 cut(s)	137, 158, 307, 907
PspPI	GGNCC	2 cut(s)	803, 1061
PspPPI	RGGWCCY	1 cut(s)	803
RsaI	GTAC	4 cut(s)	122, 368, 914, 1028
RsaNI	GTAC	4 cut(s)	121, 367, 913, 1027
RseI	CAYNNNNRTG	1 cut(s)	968
SaqAI	TTAA	3 cut(s)	315, 432, 504
SatI	GCNGC	2 cut(s)	30, 681
Sau3AI	GATC	2 cut(s)	436, 862
Sau96I	GGNCC	2 cut(s)	803, 1061
ScaI	AGTACT	1 cut(s)	914
ScrFI	CCNGG	1 cut(s)	934
SfaNI	GCATC	5 cut(s)	318, 328, 501, 563, 990
SfcI	CTRYAG	1 cut(s)	1056
SinI	GGWCC	2 cut(s)	803, 1061
SmiMI	CAYNNNNRTG	1 cut(s)	968
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	5 cut(s)	593, 605, 749, 815, 876
SseBI	AGGCCT	2 cut(s)	627, 1022
SsiI	CCGC	3 cut(s)	178, 348, 389
StuI	AGGCCT	2 cut(s)	627, 1022
StyD4I	CCNGG	1 cut(s)	932
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	4 cut(s)	148, 416, 475, 551
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	152, 900
TasI	AATT	5 cut(s)	593, 605, 749, 815, 876
TatI	WGTACW	1 cut(s)	912
TfiI	GAWTC	3 cut(s)	565, 665, 722
Tru1I	TTAA	3 cut(s)	315, 432, 504
Tru9I	TTAA	3 cut(s)	315, 432, 504
TscAI	CASTG	3 cut(s)	388, 708, 859
TseFI	GTSAC	2 cut(s)	421, 551
TseI	GCWGC	2 cut(s)	29, 680
Tsp45I	GTSAC	2 cut(s)	421, 551
TspDTI	ATGAA	5 cut(s)	23, 513, 598, 735, 756
TspGWI	ACGGA	3 cut(s)	715, 882, 903
TspRI	CASTG	3 cut(s)	388, 708, 859
Van91I	CCANNNNNTGG	1 cut(s)	915
VpaK11BI	GGWCC	2 cut(s)	803, 1061
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.