Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Forward (+)

20455317 .. 20457068

Gene Structure 1752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAAGCGATTTATTGTTCTTGCGCTTTGCATGCTTATGGTTCTTGAAACCACAAAGGGTTTAGATTTCCATAACAAAGATGTGGAATCAGAGAATAGCTTGTGGGAGCTATACGAACGGTGGAGGAGTCACCACACTGTTGCTAGGAGCCTTGAAGAGAAAGCTAAGAGGTTCAACGTGTTCAAGCACAACGTGAAGCACATCCATGAGACCAACAAGAAGGATAAATCTTACAAGCTCAAGCTAAACAAGTTTGGTGACATGACTAGTGAAGAATTTAGGAGAACATACGCTGGTTCAAACATCAAACATCATAGGATGTTTCAAGGCGAAAAAAAGGCCACAAAGAGCTTCATGTATGCAAATGTAAATACTCTCCCAACCTCCGTTGATTGGAGAAAGAATGGAGCCGTCACTCCTGTCAAAAACCAAGGCCAATGCGGGAGTTGTTGGGCGTTTTCAACAGTTGTTGCGGTGGAAGGGATCAACCAAATAAGAACTAAAAAGCTGACATCACTCTCAGAGCAAGAGCTAGTAGATTGTGATACAAACCAGAACCAAGGATGCAATGGAGGTCTAATGGACCTTGCTTTTGAGTTCATCAAGGAGAAAGGAGGACTCACAAGTGAGCTAGTGTACCCTTACAAGGCTTCTGATGAAACTTGTGACACAAACAAAGAAAATGCTCCGGTAGTTTCAATCGATGGACACGAAGATGTTCCTAAGAACAGCGAGGATGATCTAATGAAAGCTGTTGCTAATCAGCCTGTTTCTGTTGCTATTGATGCTGGAGGCTCAGACTTTCAATTCTACTCCGAGGGAGTGTTTACCGGGAGATGCGGAACAGAGCTAAACCATGGAGTTGCGGTAGTAGGGTATGGAACAACGATAGACGGAACAAAGTATTGGATTGTTAAGAATTCATGGGGAGAGGAATGGGGAGAGAAAGGATACATAAGAATGCAGAGAGGGATTCGTCATAAAGAAGGACTTTGTGGTATTGCAATGGAAGCTTCTTATCCTCTCAAGAACTCCAACACTAACCCTTCTAGACTTTCCTTGGACTCGCTTAAGGATGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

361

Amino Acids

40.71

Weight (kDa)

7.15

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	38 - 93	4.4e-15	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	126 - 341	2e-86	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	441, 473, 840, 866
AclWI	GGATC	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	275, 919
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	2 cut(s)	393, 646
AflII	CTTAAG	1 cut(s)	1070
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	9 cut(s)	47, 155, 175, 184, 300, 326, 462, 699, 806
AhlI	ACTAGT	1 cut(s)	266
AjuI	GAANNNNNNNTTGG	2 cut(s)	889, 921
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	2 cut(s)	339, 433
ApoI	RAATTY	2 cut(s)	275, 919
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
Asp700I	GAANNNNTTC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	2 cut(s)	122, 269
AvaII	GGWCC	1 cut(s)	583
BccI	CCATC	1 cut(s)	698
BceAI	ACGGC	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	944
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	1 cut(s)	203
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	5 cut(s)	144, 267, 533, 632, 1050
BfrI	CTTAAG	1 cut(s)	1070
BfuI	GTATCC	1 cut(s)	944
Bme1390I	CCNGG	1 cut(s)	832
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	149, 409
BmrFI	CCNGG	1 cut(s)	832
BmsI	GCATC	3 cut(s)	554, 775, 827
BpmI	CTGGAG	1 cut(s)	810
BpuEI	CTTGAG	2 cut(s)	224, 1010
BpuMI	CCSGG	1 cut(s)	832
Bsa29I	ATCGAT	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	5 cut(s)	430, 559, 816, 856, 1059
BsaWI	WCCGGW	1 cut(s)	688
BsaXI	ACNNNNNCTCC	2 cut(s)	852, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 646
Bse3DI	GCAATG	2 cut(s)	574, 1011
BseCI	ATCGAT	1 cut(s)	702
BseDI	CCNNGG	5 cut(s)	430, 559, 816, 856, 1059
BseGI	GGATG	5 cut(s)	201, 324, 569, 742, 1081
BseLI	CCNNNNNNNGG	2 cut(s)	393, 646
BseMI	GCAATG	2 cut(s)	574, 1011
BseMII	CTCAG	2 cut(s)	534, 810
BseRI	GAGGAG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	341, 435
BshVI	ATCGAT	1 cut(s)	702
BsiSI	CCGG	2 cut(s)	689, 831
BslI	CCNNNNNNNGG	2 cut(s)	393, 646
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	966
BsnI	GGCC	2 cut(s)	341, 435
Bso31I	GGTCTC	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	483, 739
Bsp19I	CCATGG	1 cut(s)	856
BspACI	CCGC	4 cut(s)	441, 473, 840, 866
BspANI	GGCC	2 cut(s)	341, 435
BspCNI	CTCAG	2 cut(s)	533, 809
BspDI	ATCGAT	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	149, 409
BspPI	GGATC	1 cut(s)	491
BspTI	CTTAAG	1 cut(s)	1070
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	574, 1011
BssECI	CCNNGG	5 cut(s)	430, 559, 816, 856, 1059
BssMI	GATC	2 cut(s)	483, 739
BssT1I	CCWWGG	4 cut(s)	430, 559, 856, 1059
Bst4CI	ACNGT	3 cut(s)	120, 139, 466
Bst6I	CTCTTC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	1070
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	4 cut(s)	165, 520, 723, 796
BstDSI	CCRYGG	1 cut(s)	856
BstF5I	GGATG	5 cut(s)	201, 324, 569, 742, 1081
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	486, 742
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	483, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 785, 1010
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	830
Bsu15I	ATCGAT	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	944
BsuRI	GGCC	2 cut(s)	341, 435
BsuTUI	ATCGAT	1 cut(s)	702
BtgI	CCRYGG	1 cut(s)	856
BtsCI	GGATG	5 cut(s)	201, 324, 569, 742, 1081
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	583
ClaI	ATCGAT	1 cut(s)	702
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	6 cut(s)	31, 206, 262, 355, 857, 924
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	4 cut(s)	165, 520, 723, 796
DpnI	GATC	2 cut(s)	485, 741
DpnII	GATC	2 cut(s)	483, 739
DraIII	CACNNNGTG	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	4 cut(s)	430, 559, 856, 1059
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	919
EcoT14I	CCWWGG	4 cut(s)	430, 559, 856, 1059
ErhI	CCWWGG	4 cut(s)	430, 559, 856, 1059
FaeI	CATG	6 cut(s)	34, 209, 265, 358, 860, 927
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FatI	CATG	6 cut(s)	30, 205, 261, 354, 856, 923
FauI	CCCGC	1 cut(s)	434
FokI	GGATG	4 cut(s)	188, 331, 576, 749
FspBI	CTAG	5 cut(s)	144, 267, 533, 632, 1050
GlaI	GCGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	2 cut(s)	341, 435
HapII	CCGG	2 cut(s)	689, 831
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	6 cut(s)	34, 209, 265, 358, 860, 927
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	1011
HinfI	GANTC	5 cut(s)	86, 127, 618, 973, 1064
HpaII	CCGG	2 cut(s)	689, 831
HphI	GGTGA	2 cut(s)	122, 269
Hpy166II	GTNNAC	2 cut(s)	637, 828
Hpy188I	TCNGA	5 cut(s)	91, 523, 655, 799, 817
Hpy188III	TCNNGA	3 cut(s)	44, 1027, 1050
Hpy8I	GTNNAC	2 cut(s)	637, 828
HpyAV	CCTTC	4 cut(s)	214, 473, 980, 1056
HpyCH4III	ACNGT	3 cut(s)	120, 139, 466
HpyCH4IV	ACGT	2 cut(s)	177, 192
HpyCH4V	TGCA	5 cut(s)	30, 362, 567, 964, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 785, 1010
HpyF3I	CTNAG	4 cut(s)	165, 520, 723, 796
HpySE526I	ACGT	2 cut(s)	177, 192
Hsp92II	CATG	6 cut(s)	34, 209, 265, 358, 860, 927
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	483, 739
LmnI	GCTCC	4 cut(s)	106, 147, 407, 691
LpnPI	CCDG	7 cut(s)	279, 432, 566, 702, 774, 780, 844
LweI	GCATC	3 cut(s)	554, 775, 827
MaeI	CTAG	5 cut(s)	144, 267, 533, 632, 1050
MaeII	ACGT	2 cut(s)	177, 192
MaeIII	GTNAC	4 cut(s)	128, 257, 412, 665
MalI	GATC	2 cut(s)	485, 741
MboI	GATC	2 cut(s)	483, 739
MboII	GAAGA	3 cut(s)	167, 284, 725
MluCI	AATT	3 cut(s)	275, 806, 919
MlyI	GAGTC	3 cut(s)	136, 612, 1058
MmeI	TCCRAC	1 cut(s)	1059
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	2 cut(s)	915, 1071
MslI	CAYNNNNRTG	4 cut(s)	35, 204, 714, 959
MspCI	CTTAAG	1 cut(s)	1070
MspI	CCGG	2 cut(s)	689, 831
MspR9I	CCNGG	1 cut(s)	832
Mva1269I	GAATGC	1 cut(s)	966
MwoI	GCNNNNNNNGC	3 cut(s)	31, 785, 1010
NciI	CCSGG	1 cut(s)	832
NcoI	CCATGG	1 cut(s)	856
NdeII	GATC	2 cut(s)	483, 739
NlaIII	CATG	6 cut(s)	34, 209, 265, 358, 860, 927
NlaIV	GGNNCC	2 cut(s)	149, 409
NmuCI	GTSAC	4 cut(s)	128, 257, 412, 665
NspI	RCATGY	1 cut(s)	34
PaeI	GCATGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	708
PctI	GAATGC	1 cut(s)	966
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	86, 973
PleI	GAGTC	3 cut(s)	135, 612, 1058
PpsI	GAGTC	3 cut(s)	135, 612, 1058
PspN4I	GGNNCC	2 cut(s)	149, 409
PspPI	GGNCC	1 cut(s)	583
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	4 cut(s)	35, 204, 714, 959
SaqAI	TTAA	2 cut(s)	915, 1071
Sau3AI	GATC	2 cut(s)	483, 739
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	3 cut(s)	136, 612, 1058
ScrFI	CCNGG	1 cut(s)	832
SfaNI	GCATC	3 cut(s)	554, 775, 827
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	4 cut(s)	35, 204, 714, 959
SmlI	CTYRAG	3 cut(s)	239, 1025, 1070
SmoI	CTYRAG	3 cut(s)	239, 1025, 1070
SpeI	ACTAGT	1 cut(s)	266
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	3 cut(s)	275, 806, 919
SsiI	CCGC	4 cut(s)	441, 473, 840, 866
SspMI	CTAG	5 cut(s)	144, 267, 533, 632, 1050
StyD4I	CCNGG	1 cut(s)	830
StyI	CCWWGG	4 cut(s)	430, 559, 856, 1059
TaaI	ACNGT	3 cut(s)	120, 139, 466
TaiI	ACGT	2 cut(s)	180, 195
TaqI	TCGA	1 cut(s)	702
TasI	AATT	3 cut(s)	275, 806, 919
TfiI	GAWTC	2 cut(s)	86, 973
Tru1I	TTAA	2 cut(s)	915, 1071
Tru9I	TTAA	2 cut(s)	915, 1071
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	4 cut(s)	128, 257, 412, 665
Tsp45I	GTSAC	4 cut(s)	128, 257, 412, 665
TspDTI	ATGAA	6 cut(s)	17, 343, 589, 672, 761, 912
TspGWI	ACGGA	2 cut(s)	376, 909
TspRI	CASTG	1 cut(s)	142
Vha464I	CTTAAG	1 cut(s)	1070
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	2 cut(s)	275, 919
XbaI	TCTAGA	1 cut(s)	1049
XceI	RCATGY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	5 cut(s)	144, 267, 533, 632, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.