Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Reverse (-)

56641737 .. 56642955

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGTAGGCCTTACAAGCTCAAGCTGCACAAGTTTGCGGACATGACCAACCACGAGTTTGTGAACTCCGGATATGCTAACTCAAAGGTTAGCCACTACCGGTCGTTGCATGGCAGCCGGAGGATAACCGGCTTCACGCATGATCAGACCGACAATCTTCCTCAAAGTGTTGACTGGAGGAAGAATGGAGCCGTCACCGGAGTTAAAGACCAAGGACAATGCGTTAGCTGCTGGGCATTTTCGACTGTAGTGGCAGTGGAGGGCCTCAACAAAATTAAAACGAACCAGCTCGTCTCTTTGTCAGAGCAGGAGCTTGTTGACTGCAATAGAGATAACGAAGGGTGTAGTGGCGGATTGACGGACAACGCATTTGATTTCATAAAGAAAACTGGTGGAATCACAACAGAGCAGAACTACCCTTACAAAGCCGTTGATGAGTCTTGTGACTCATCCAGGGGTGTGTTCATCGGGCCTTGTGGAACTGAGCTGAACCATGGTGCGGCAGTCGTTGGGTATGGAGCAACTCTAGATGGAACCAAGTACTGGATTGTGAAGAACTCATGGGGAACTGAATGGGGAGAGAAGGGTTTCATAAGGATGCAACGTGGAGTTGAAGCAGAAGACGGGGCCGTGTGGAGTCTTTCAAAGATGAACTCCAGGCCTCTATCTTATGTTCCTTGTTGCCAGTTAATTAGTTACAGGGGAGCTAGCTCTCTCATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

241

Amino Acids

26.57

Weight (kDa)

8.07

Isoelectric Point (pI)

24.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	53 - 151	3e-39	Papain family cysteine protease
Peptidase_C1	PF00112	152 - 205	1.9e-17	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	543
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	3 cut(s)	38, 351, 500
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	499, 543
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	614, 645
AjnI	CCWGG	2 cut(s)	452, 656
AluBI	AGCT	8 cut(s)	19, 25, 228, 289, 313, 487, 707, 711
AluI	AGCT	8 cut(s)	19, 25, 228, 289, 313, 487, 707, 711
Alw26I	GTCTC	1 cut(s)	298
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	5 cut(s)	8, 262, 470, 627, 659
ApeKI	GCWGC	3 cut(s)	25, 114, 228
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AsiGI	ACCGGT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	587
AspS9I	GGNCC	3 cut(s)	262, 470, 627
AsuHPI	GGTGA	1 cut(s)	187
AsuNHI	GCTAGC	1 cut(s)	707
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	12, 126, 215
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	3 cut(s)	176, 413, 614
BciT130I	CCWGG	2 cut(s)	454, 658
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	2 cut(s)	527, 708
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	4 cut(s)	26, 115, 229, 501
BlsI	GCNGC	4 cut(s)	27, 116, 230, 502
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	454, 658
BmgT120I	GGNCC	3 cut(s)	262, 470, 627
BmiI	GGNNCC	3 cut(s)	190, 535, 628
BmrFI	CCNGG	2 cut(s)	454, 658
BmsI	GCATC	1 cut(s)	588
BmtI	GCTAGC	1 cut(s)	711
BpiI	GAAGAC	1 cut(s)	627
BpmI	CTGGAG	2 cut(s)	196, 640
BpuEI	CTTGAG	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	211, 453, 493
BsaWI	WCCGGW	3 cut(s)	68, 99, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 543
Bse118I	RCCGGY	2 cut(s)	99, 128
Bse1I	ACTGG	4 cut(s)	179, 394, 548, 685
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	454, 658
BseDI	CCNNGG	3 cut(s)	211, 453, 493
BseGI	GGATG	2 cut(s)	449, 603
BseLI	CCNNNNNNNGG	2 cut(s)	499, 543
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	4 cut(s)	179, 394, 548, 685
BseXI	GCAGC	3 cut(s)	12, 126, 215
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	5 cut(s)	10, 264, 472, 629, 661
BshTI	ACCGGT	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	104
BsiSI	CCGG	5 cut(s)	69, 100, 118, 129, 198
BslI	CCNNNNNNNGG	2 cut(s)	499, 543
BsmAI	GTCTC	1 cut(s)	298
BsmBI	CGTCTC	1 cut(s)	298
BsnI	GGCC	5 cut(s)	10, 264, 472, 629, 661
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	3 cut(s)	38, 351, 500
BspANI	GGCC	5 cut(s)	10, 264, 472, 629, 661
BspCNI	CTCAG	1 cut(s)	475
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	190, 535, 628
BspOI	GCTAGC	1 cut(s)	711
BsrFI	RCCGGY	2 cut(s)	99, 128
BsrI	ACTGG	4 cut(s)	179, 394, 548, 685
BssAI	RCCGGY	2 cut(s)	99, 128
BssECI	CCNNGG	3 cut(s)	211, 453, 493
BssMI	GATC	1 cut(s)	142
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	2 cut(s)	211, 493
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	454, 658
Bst4CI	ACNGT	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	449, 603
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 25, 228
BstNI	CCWGG	2 cut(s)	454, 658
BstSCI	CCNGG	2 cut(s)	452, 656
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	12, 126, 215
BstV2I	GAAGAC	1 cut(s)	627
BsuRI	GGCC	5 cut(s)	10, 264, 472, 629, 661
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	449, 603
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	709
Cfr10I	RCCGGY	2 cut(s)	99, 128
Cfr13I	GGNCC	3 cut(s)	262, 470, 627
Csp6I	GTAC	1 cut(s)	541
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	5 cut(s)	43, 110, 140, 494, 561
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	211, 493
Eco147I	AGGCCT	2 cut(s)	10, 661
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	452, 656
EcoT14I	CCWWGG	2 cut(s)	211, 493
ErhI	CCWWGG	2 cut(s)	211, 493
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	5 cut(s)	46, 113, 143, 497, 564
FatI	CATG	5 cut(s)	42, 109, 139, 493, 560
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	4 cut(s)	26, 115, 229, 501
FokI	GGATG	2 cut(s)	436, 610
Fsp4HI	GCNGC	4 cut(s)	26, 115, 229, 501
FspBI	CTAG	2 cut(s)	527, 708
GluI	GCNGC	4 cut(s)	26, 115, 229, 501
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	2 cut(s)	196, 640
HaeIII	GGCC	5 cut(s)	10, 264, 472, 629, 661
HapII	CCGG	5 cut(s)	69, 100, 118, 129, 198
Hin1II	CATG	5 cut(s)	46, 113, 143, 497, 564
HincII	GTYRAC	2 cut(s)	172, 319
HindII	GTYRAC	2 cut(s)	172, 319
HinfI	GANTC	4 cut(s)	396, 437, 446, 637
HpaII	CCGG	5 cut(s)	69, 100, 118, 129, 198
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	64, 172, 319
Hpy188I	TCNGA	2 cut(s)	147, 304
Hpy188III	TCNNGA	2 cut(s)	69, 527
Hpy8I	GTNNAC	3 cut(s)	64, 172, 319
HpyAV	CCTTC	2 cut(s)	332, 577
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	4 cut(s)	28, 109, 324, 601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 25, 228
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	5 cut(s)	46, 113, 143, 497, 564
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	4 cut(s)	188, 310, 518, 704
Lsp1109I	GCAGC	3 cut(s)	12, 126, 215
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	2 cut(s)	527, 708
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	3 cut(s)	193, 443, 695
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	4 cut(s)	149, 193, 565, 632
MluCI	AATT	2 cut(s)	273, 690
MlyI	GAGTC	3 cut(s)	440, 446, 646
MnlI	CCTC	6 cut(s)	114, 171, 171, 253, 275, 672
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	587
MseI	TTAA	3 cut(s)	204, 276, 689
MslI	CAYNNNNRTG	1 cut(s)	596
MspI	CCGG	5 cut(s)	69, 100, 118, 129, 198
MspR9I	CCNGG	2 cut(s)	454, 658
MvaI	CCWGG	2 cut(s)	454, 658
MwoI	GCNNNNNNNGC	3 cut(s)	16, 25, 228
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	1 cut(s)	142
NheI	GCTAGC	1 cut(s)	707
NlaIII	CATG	5 cut(s)	46, 113, 143, 497, 564
NlaIV	GGNNCC	3 cut(s)	190, 535, 628
NmuCI	GTSAC	2 cut(s)	193, 443
PceI	AGGCCT	2 cut(s)	10, 661
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	396
PflMI	CCANNNNNTGG	1 cut(s)	543
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	27, 116, 230, 502
PleI	GAGTC	3 cut(s)	440, 445, 645
PpsI	GAGTC	3 cut(s)	440, 445, 645
Psp6I	CCWGG	2 cut(s)	452, 656
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	2 cut(s)	452, 656
PspN4I	GGNNCC	3 cut(s)	190, 535, 628
PspPI	GGNCC	3 cut(s)	262, 470, 627
PsrI	GAACNNNNNNTAC	2 cut(s)	404, 436
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	3 cut(s)	204, 276, 689
SatI	GCNGC	4 cut(s)	26, 115, 229, 501
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	3 cut(s)	262, 470, 627
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	3 cut(s)	440, 446, 646
ScrFI	CCNGG	2 cut(s)	454, 658
SfaNI	GCATC	1 cut(s)	588
SfcI	CTRYAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	273, 690
SseBI	AGGCCT	2 cut(s)	10, 661
SsiI	CCGC	3 cut(s)	38, 351, 500
SspMI	CTAG	2 cut(s)	527, 708
StuI	AGGCCT	2 cut(s)	10, 661
StyD4I	CCNGG	2 cut(s)	452, 656
StyI	CCWWGG	2 cut(s)	211, 493
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	1 cut(s)	242
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	273, 690
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	3 cut(s)	204, 276, 689
Tru9I	TTAA	3 cut(s)	204, 276, 689
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	2 cut(s)	193, 443
TseI	GCWGC	3 cut(s)	25, 114, 228
Tsp45I	GTSAC	2 cut(s)	193, 443
TspDTI	ATGAA	4 cut(s)	367, 454, 580, 665
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	543
XbaI	TCTAGA	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	2 cut(s)	527, 708
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.