Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Forward (+)

7405218 .. 7408247

Gene Structure 3030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1105700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAACTTGGGGAAGTTTATTTTGGTTGCCCTAGCTCTAGCTCTGGTTCTTGGCCTGGCTAAGTGCTTTGAATACCAAGAGAAGGACTTGGCTTCTGAAGACAGTCTATGGGATTTGTACGAGAGGTGGAGGAGCCACCACAAAATCTCCCACGACCTCGGCGAGAAGCAAAAACGCTTCAATGTTTTTAAGGAGAACGTGAAGCATGTTCACAAGGTGAACCAGATGAGCAAACCCTACAAGCTCAAGCTGAACAAGTTCGCAGACATGACCAACCATGAGTTTGCAAGCTCCTATGCTGGCTCGAAGGTTAACCACTACAGATCACTGCAGGGCAGCAGAAGGGCTACAGCCCTCACACATGGGATGACCGACGATCTTCCGGCAAGTGTTGATTGGAGGAAGAGTGGAGCTGTCACTGGAATTAAAGACCAAGGCAAATGTGTTGGAGTGGAGGGCATCAATCAGATCAAAACAAAGCAGCTAGTATCTCTGTCTGAGCAAGAGCTGGTTGATTGCAACAGAGACCCGAACGAAGGGTGCGACGGTGGACTGATGGAAAAAGCATTTGAGTACATCAAGAAAAATGGTGGAATAACAACCGAGCAAAACTACCCTTACAGAGCCAGTGATGGTCCTTGTGACTCATCCAAGATAACGAATGCTCCTCTGGTGCAAATCGATGGTTATGAAAACGTACCTGAAAACGATGAGAATGCTTTGATGAAAGCTGTTGCAAACCAACCTGTATCAGTTGCACTAGACGCTGGTGGTAAAGACTTCCAATTCTACGCGGAGGGTGTGATGAATGGGGAGTGTGGAACAGAGCTGAATCATGGAGTGGCAGTTGTGGGATATGGAGCAACTCAAGAAGGAACCAAGTACTGGATTGTGAAGAATTCATGGGGAGTTGGATGGGGAGAGAAAGGTTACTTGAGGATTCAACGAGGGGTTGATAAAGGAGGGATGTGTGGAATTGCTATGGATGCCTCTTACCCTATGAAATCGTCACCAAACAACACCCAAAGCAGCTCCTTCAAGGAAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

351

Amino Acids

38.7

Weight (kDa)

6.52

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 95	1.1e-15	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	127 - 334	2.6e-71	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	885
AccII	CGCG	1 cut(s)	794
AciI	CCGC	1 cut(s)	794
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	217
AfaI	GTAC	4 cut(s)	119, 575, 699, 884
AfiI	CCNNNNNNNGG	3 cut(s)	82, 536, 885
AgsI	TTSAA	4 cut(s)	71, 181, 944, 1039
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	519
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	336, 481, 1029
ApoI	RAATTY	1 cut(s)	898
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	2 cut(s)	229, 1002
AvaII	GGWCC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	348, 493, 1041
BccI	CCATC	4 cut(s)	550, 626, 677, 909
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	4 cut(s)	32, 38, 485, 761
BfmI	CTRYAG	3 cut(s)	319, 329, 348
BisI	GCNGC	3 cut(s)	337, 482, 1030
BlsI	GCNGC	3 cut(s)	338, 483, 1031
BmcAI	AGTACT	1 cut(s)	884
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	2 cut(s)	134, 877
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	468, 976
BpiI	GAAGAC	1 cut(s)	105
BpuEI	CTTGAG	3 cut(s)	230, 852, 955
Bsa29I	ATCGAT	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	157, 433
BsaXI	ACNNNNNCTCC	8 cut(s)	131, 161, 391, 421, 649, 679, 831, 861
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 536, 885
Bse1I	ACTGG	3 cut(s)	424, 627, 890
BseBI	CCWGG	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	2 cut(s)	157, 433
BseGI	GGATG	5 cut(s)	372, 647, 920, 972, 991
BseLI	CCNNNNNNNGG	3 cut(s)	82, 536, 885
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	3 cut(s)	424, 627, 890
BseRI	GAGGAG	2 cut(s)	145, 657
BseXI	GCAGC	3 cut(s)	348, 493, 1041
Bsh1236I	CGCG	1 cut(s)	794
BshFI	GGCC	1 cut(s)	54
BshVI	ATCGAT	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	82, 536, 885
BsmAI	GTCTC	1 cut(s)	519
BsmI	GAATGC	2 cut(s)	667, 721
BsnI	GGCC	1 cut(s)	54
Bso31I	GGTCTC	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	323, 376, 468
BspACI	CCGC	1 cut(s)	794
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	490
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	1 cut(s)	794
BspLI	GGNNCC	2 cut(s)	134, 877
BspMAI	CTGCAG	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	519
BsrI	ACTGG	3 cut(s)	424, 627, 890
BssECI	CCNNGG	2 cut(s)	157, 433
BssMI	GATC	3 cut(s)	323, 376, 468
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	104, 548
Bst6I	CTCTTC	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	289, 301
BstDEI	CTNAG	2 cut(s)	60, 498
BstF5I	GGATG	5 cut(s)	372, 647, 920, 972, 991
BstFNI	CGCG	1 cut(s)	794
BstKTI	GATC	3 cut(s)	326, 379, 471
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	3 cut(s)	323, 376, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	764, 986
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	3 cut(s)	319, 329, 348
BstUI	CGCG	1 cut(s)	794
BstV1I	GCAGC	3 cut(s)	348, 493, 1041
BstV2I	GAAGAC	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	1 cut(s)	54
BsuTUI	ATCGAT	1 cut(s)	681
BtsCI	GGATG	5 cut(s)	372, 647, 920, 972, 991
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	3 cut(s)	326, 417, 634
Cac8I	GCNNGC	2 cut(s)	289, 301
Cfr13I	GGNCC	1 cut(s)	635
ClaI	ATCGAT	1 cut(s)	681
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	4 cut(s)	118, 574, 698, 883
CviAII	CATG	6 cut(s)	206, 268, 278, 362, 836, 903
CviQI	GTAC	4 cut(s)	118, 574, 698, 883
DdeI	CTNAG	2 cut(s)	60, 498
DpnI	GATC	3 cut(s)	325, 378, 470
DpnII	GATC	3 cut(s)	323, 376, 468
DraIII	CACNNNGTG	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	898
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	6 cut(s)	209, 271, 281, 365, 839, 906
FatI	CATG	6 cut(s)	205, 267, 277, 361, 835, 902
Fnu4HI	GCNGC	3 cut(s)	337, 482, 1030
FokI	GGATG	5 cut(s)	379, 634, 927, 979, 998
Fsp4HI	GCNGC	3 cut(s)	337, 482, 1030
FspBI	CTAG	4 cut(s)	32, 38, 485, 761
GluI	GCNGC	3 cut(s)	337, 482, 1030
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	1 cut(s)	773
Hin1II	CATG	6 cut(s)	209, 271, 281, 365, 839, 906
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	3 cut(s)	644, 832, 940
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	2 cut(s)	229, 1002
Hpy166II	GTNNAC	4 cut(s)	211, 220, 313, 551
Hpy188I	TCNGA	3 cut(s)	97, 468, 499
Hpy188III	TCNNGA	2 cut(s)	580, 869
Hpy8I	GTNNAC	4 cut(s)	211, 220, 313, 551
Hpy99I	CGWCG	2 cut(s)	377, 548
HpyAV	CCTTC	6 cut(s)	76, 301, 336, 530, 866, 1045
HpyCH4III	ACNGT	2 cut(s)	104, 548
HpyCH4IV	ACGT	2 cut(s)	198, 696
HpyCH4V	TGCA	6 cut(s)	287, 331, 519, 676, 737, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	764, 986
HpyF3I	CTNAG	2 cut(s)	60, 498
HpySE526I	ACGT	2 cut(s)	198, 696
Hsp92II	CATG	6 cut(s)	209, 271, 281, 365, 839, 906
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	323, 376, 468
LmnI	GCTCC	6 cut(s)	132, 296, 410, 670, 860, 1037
Lsp1109I	GCAGC	3 cut(s)	348, 493, 1041
LweI	GCATC	2 cut(s)	468, 976
MaeI	CTAG	4 cut(s)	32, 38, 485, 761
MaeII	ACGT	2 cut(s)	198, 696
MaeIII	GTNAC	4 cut(s)	415, 641, 929, 1008
MalI	GATC	3 cut(s)	325, 378, 470
MboI	GATC	3 cut(s)	323, 376, 468
MboII	GAAGA	4 cut(s)	110, 371, 415, 907
MluCI	AATT	4 cut(s)	423, 785, 898, 975
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	2 cut(s)	427, 892
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	3 cut(s)	189, 312, 426
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	2 cut(s)	667, 721
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	2 cut(s)	764, 986
NdeII	GATC	3 cut(s)	323, 376, 468
NlaIII	CATG	6 cut(s)	209, 271, 281, 365, 839, 906
NlaIV	GGNNCC	2 cut(s)	134, 877
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	3 cut(s)	415, 641, 1008
NspI	RCATGY	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 540
PctI	GAATGC	2 cut(s)	667, 721
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	832, 940
PflMI	CCANNNNNTGG	1 cut(s)	885
PkrI	GCNGC	3 cut(s)	338, 483, 1031
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	134, 877
PspPI	GGNCC	1 cut(s)	635
PstI	CTGCAG	1 cut(s)	333
RsaI	GTAC	4 cut(s)	119, 575, 699, 884
RsaNI	GTAC	4 cut(s)	118, 574, 698, 883
SaqAI	TTAA	3 cut(s)	189, 312, 426
SatI	GCNGC	3 cut(s)	337, 482, 1030
Sau3AI	GATC	3 cut(s)	323, 376, 468
Sau96I	GGNCC	1 cut(s)	635
ScaI	AGTACT	1 cut(s)	884
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	1 cut(s)	56
SfaNI	GCATC	2 cut(s)	468, 976
SfcI	CTRYAG	3 cut(s)	319, 329, 348
SinI	GGWCC	1 cut(s)	635
SmlI	CTYRAG	3 cut(s)	245, 867, 934
SmoI	CTYRAG	3 cut(s)	245, 867, 934
Sse9I	AATT	4 cut(s)	423, 785, 898, 975
SsiI	CCGC	1 cut(s)	794
SspMI	CTAG	4 cut(s)	32, 38, 485, 761
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	104, 548
TaiI	ACGT	2 cut(s)	201, 699
TaqI	TCGA	2 cut(s)	305, 681
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	4 cut(s)	423, 785, 898, 975
TatI	WGTACW	2 cut(s)	573, 882
TfiI	GAWTC	2 cut(s)	832, 940
Tru1I	TTAA	3 cut(s)	189, 312, 426
Tru9I	TTAA	3 cut(s)	189, 312, 426
TscAI	CASTG	3 cut(s)	333, 424, 634
TseFI	GTSAC	3 cut(s)	415, 641, 1008
TseI	GCWGC	3 cut(s)	336, 481, 1029
Tsp45I	GTSAC	3 cut(s)	415, 641, 1008
TspDTI	ATGAA	6 cut(s)	17, 705, 740, 821, 891, 1016
TspRI	CASTG	3 cut(s)	333, 424, 634
Van91I	CCANNNNNTGG	1 cut(s)	885
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	898
XceI	RCATGY	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	4 cut(s)	32, 38, 485, 761
ZrmI	AGTACT	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.