MD14G1166600.v1.1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
25990918 .. 25992834
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1166600.v1.1.491

Sequence Viewer

Length: 1089 bp
ATGACTAAGTTTGTTTGGGTTGCGCTTGCTCTCTCGCTCGCTTTGGCGATTGGGGTTTCTGAGAGTTTTGATTACCATGAGAAGGACTTGGCCTCGGAGGAGAGCTTGTGGGACTTGTACGAGAGGTGGAGGAGCCATCACACGGTTTCCAGGAGCCTCGACGAGAAGCACAAGCGGTTCAATGTCTTTAAAGAGAATGTCAAGCATGTTCACAACACTAACAAAGGTAATAAGCCTTACAAGCTGAAGCTCAACAAGTTTGCTGACATGACCAACCATGAGTTCAGGAGTGTTTACGCTGGTTCGAAGGTTAAGCACCATAGAATGCTCCGAGGGCAGCGCGCTGACACAGGCTTTCGGTATGCAAATGTTGAAAGTGTCCCACCGTCTGTTGATTGGAGAAGGAATGGTGCTGTCACTCCCATTAAGGATCAAGGCCAATGCGGAAGTTGCTGGGCGTTTTCGACAGTTGCAGCTGTTGAGGGCATCAATCAAATTAAGACAAAGAAGCTGGTTTCGTTGTCTGAGCAAGAGCTCGTCGACTGTGACACGGAACAAAACCAAGGATGCAATGGAGGGCTAATGGAACTGGCAATGGAGTTCATCAAACAAAAGGGAGGCCTGACAACCGAAACTAATTACCCTTACCGAGCAGCAGATTCAACATGTAATGTTGCAAAGGAAAACGCTCCGGTTGTGTCCATTGATGGCCATGAGAGTGTGCCTGCTAATGACGAGGATGCATTGCTCAAAGCAGCTGCAAACCAACCTATTGCTGTTGCCATCGATGCTGGAGGTTCCGATTTCCAATTCTACGACGAGGGGGTATTTGACGGGAAATGCGGCACAGAGCTTGATCACGGAGTGGCAGTTGTTGGCTACGGAACAACACTTGATGGAACCGAGTATTGGATAGTCAAGAACTCATGGGGACCCGAGTGGGGAGAGAAGGGTTACATAAGGATGCAGCGCGGCGTCTCTGCTAAGGAGGGGATCTGTGGAATAGCTATGGAGGCTTCGTATCCCGTCAAGAACTCTTCGACAAACCCTAAAGCAGCAGTTACCTCAAATCCTAAGGATGAACTCTAA

Protein Analysis

363

Amino Acids

40.02

Weight (kDa)

6.03

Isoelectric Point (pI)

27.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 40 - 95 7.6e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 127 - 343 1.6e-84 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 540
AccII CGCG 2 cut(s) 342, 972
AciI CCGC 4 cut(s) 175, 444, 843, 972
AclWI GGATC 2 cut(s) 438, 1001
AcoI YGGCCR 1 cut(s) 709
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 975
AdeI CACNNNGTG 1 cut(s) 865
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 4 cut(s) 82, 142, 909, 941
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 3 cut(s) 181, 374, 663
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 4 cut(s) 266, 298, 892, 924
AluBI AGCT 9 cut(s) 105, 244, 250, 476, 511, 535, 758, 853, 1007
AluI AGCT 9 cut(s) 105, 244, 250, 476, 511, 535, 758, 853, 1007
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 1 cut(s) 982
AlwI GGATC 2 cut(s) 438, 1001
Ama87I CYCGRG 1 cut(s) 935
AoxI GGCC 4 cut(s) 90, 436, 619, 709
ApeKI GCWGC 7 cut(s) 337, 473, 653, 755, 758, 967, 1055
AspLEI GCGC 4 cut(s) 25, 342, 344, 972
AspS9I GGNCC 1 cut(s) 932
AsuII TTCGAA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 935
AvaII GGWCC 1 cut(s) 932
AxyI CCTNAGG 1 cut(s) 1074
BalI TGGCCA 1 cut(s) 711
BanII GRGCYC 1 cut(s) 537
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 7 cut(s) 349, 485, 665, 745, 767, 979, 1067
BccI CCATC 4 cut(s) 144, 701, 791, 890
BciT130I CCWGG 1 cut(s) 151
BciVI GTATCC 1 cut(s) 1032
BclI TGATCA 1 cut(s) 856
BcoDI GTCTC 1 cut(s) 982
BfuI GTATCC 1 cut(s) 1032
BisI GCNGC 9 cut(s) 338, 474, 654, 756, 759, 844, 968, 973, 1056
BlsI GCNGC 9 cut(s) 339, 475, 655, 757, 760, 845, 969, 974, 1057
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 932
BmeT110I CYCGRG 1 cut(s) 935
BmgT120I GGNCC 1 cut(s) 932
BmiI GGNNCC 6 cut(s) 134, 155, 799, 901, 933, 934
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 5 cut(s) 495, 557, 730, 778, 954
BpmI CTGGAG 1 cut(s) 813
Bpu10I CCTNAGC 1 cut(s) 984
Bpu14I TTCGAA 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 975
BsaJI CCNNGG 3 cut(s) 93, 331, 562
BsaWI WCCGGW 1 cut(s) 691
BsaXI ACNNNNNCTCC 6 cut(s) 92, 122, 855, 885, 1004, 1034
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 142, 909, 941
Bse1I ACTGG 1 cut(s) 594
Bse21I CCTNAGG 1 cut(s) 1074
Bse3DI GCAATG 3 cut(s) 577, 600, 743
BseBI CCWGG 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 3 cut(s) 93, 331, 562
BseGI GGATG 4 cut(s) 572, 745, 969, 1084
BseLI CCNNNNNNNGG 4 cut(s) 82, 142, 909, 941
BseMI GCAATG 3 cut(s) 577, 600, 743
BseMII CTCAG 2 cut(s) 51, 516
BseNI ACTGG 1 cut(s) 594
BsePI GCGCGC 1 cut(s) 340
BseRI GAGGAG 2 cut(s) 113, 145
BseXI GCAGC 7 cut(s) 349, 485, 665, 745, 767, 979, 1067
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 2 cut(s) 342, 972
BshFI GGCC 4 cut(s) 92, 438, 621, 711
BshVI ATCGAT 1 cut(s) 786
BsiHKAI GWGCWC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 935
BsiSI CCGG 1 cut(s) 692
BslFI GGGAC 3 cut(s) 125, 365, 945
BslI CCNNNNNNNGG 4 cut(s) 82, 142, 909, 941
BsmAI GTCTC 1 cut(s) 982
BsmBI CGTCTC 1 cut(s) 982
BsmFI GGGAC 3 cut(s) 125, 365, 945
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 4 cut(s) 92, 438, 621, 711
BsoBI CYCGRG 1 cut(s) 935
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 3 cut(s) 430, 856, 993
BspACI CCGC 4 cut(s) 175, 444, 843, 972
BspANI GGCC 4 cut(s) 92, 438, 621, 711
BspCNI CTCAG 2 cut(s) 52, 517
BspDI ATCGAT 1 cut(s) 786
BspFNI CGCG 2 cut(s) 342, 972
BspLI GGNNCC 6 cut(s) 134, 155, 799, 901, 933, 934
BspPI GGATC 2 cut(s) 438, 1001
BspT104I TTCGAA 1 cut(s) 305
BsrDI GCAATG 3 cut(s) 577, 600, 743
BsrI ACTGG 1 cut(s) 594
BssECI CCNNGG 3 cut(s) 93, 331, 562
BssHII GCGCGC 1 cut(s) 340
BssMI GATC 3 cut(s) 430, 856, 993
BssNI GRCGYC 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 562
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 4 cut(s) 145, 387, 469, 545
Bst6I CTCTTC 1 cut(s) 1042
BstACI GRCGYC 1 cut(s) 975
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 4 cut(s) 27, 39, 342, 726
BstDEI CTNAG 5 cut(s) 6, 60, 525, 984, 1074
BstF5I GGATG 4 cut(s) 572, 745, 969, 1084
BstFNI CGCG 2 cut(s) 342, 972
BstHHI GCGC 4 cut(s) 25, 342, 344, 972
BstKTI GATC 3 cut(s) 433, 859, 996
BstMAI GTCTC 1 cut(s) 982
BstMBI GATC 3 cut(s) 430, 856, 993
BstMWI GCNNNNNNNGC 5 cut(s) 241, 334, 450, 788, 1013
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 2 cut(s) 209, 669
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 2 cut(s) 342, 972
BstV1I GCAGC 7 cut(s) 349, 485, 665, 745, 767, 979, 1067
BstX2I RGATCY 1 cut(s) 993
BstYI RGATCY 1 cut(s) 993
Bsu15I ATCGAT 1 cut(s) 786
Bsu36I CCTNAGG 1 cut(s) 1074
BsuI GTATCC 1 cut(s) 1032
BsuRI GGCC 4 cut(s) 92, 438, 621, 711
BsuTUI ATCGAT 1 cut(s) 786
BtsCI GGATG 4 cut(s) 572, 745, 969, 1084
Cac8I GCNNGC 4 cut(s) 27, 39, 342, 726
CfoI GCGC 4 cut(s) 25, 342, 344, 972
Cfr13I GGNCC 1 cut(s) 932
ClaI ATCGAT 1 cut(s) 786
CseI GACGC 1 cut(s) 964
Csp6I GTAC 1 cut(s) 118
CviAII CATG 7 cut(s) 77, 206, 268, 278, 666, 713, 927
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 5 cut(s) 6, 60, 525, 984, 1074
DpnI GATC 3 cut(s) 432, 858, 995
DpnII GATC 3 cut(s) 430, 856, 993
DraI TTTAAA 1 cut(s) 190
DraIII CACNNNGTG 1 cut(s) 865
EaeI YGGCCR 1 cut(s) 709
Eam1104I CTCTTC 1 cut(s) 1042
EarI CTCTTC 1 cut(s) 1042
Ecl136II GAGCTC 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 562
Eco147I AGGCCT 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 932
Eco53kI GAGCTC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 1074
Eco88I CYCGRG 1 cut(s) 935
EcoICRI GAGCTC 1 cut(s) 535
EcoO109I RGGNCCY 1 cut(s) 932
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 562
EcoT22I ATGCAT 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 562
Esp3I CGTCTC 1 cut(s) 982
FaeI CATG 7 cut(s) 80, 209, 271, 281, 669, 716, 930
FaqI GGGAC 3 cut(s) 125, 365, 945
FatI CATG 7 cut(s) 76, 205, 267, 277, 665, 712, 926
FbaI TGATCA 1 cut(s) 856
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 9 cut(s) 338, 474, 654, 756, 759, 844, 968, 973, 1056
FokI GGATG 3 cut(s) 579, 752, 976
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 9 cut(s) 338, 474, 654, 756, 759, 844, 968, 973, 1056
GlaI GCGC 4 cut(s) 24, 341, 343, 971
GluI GCNGC 9 cut(s) 338, 474, 654, 756, 759, 844, 968, 973, 1056
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 813
HaeIII GGCC 4 cut(s) 92, 438, 621, 711
HapII CCGG 1 cut(s) 692
HgaI GACGC 1 cut(s) 964
HhaI GCGC 4 cut(s) 25, 342, 344, 972
Hin1I GRCGYC 1 cut(s) 975
Hin1II CATG 7 cut(s) 80, 209, 271, 281, 669, 716, 930
Hin6I GCGC 4 cut(s) 23, 340, 342, 970
HinP1I GCGC 4 cut(s) 23, 340, 342, 970
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 1 cut(s) 659
HpaII CCGG 1 cut(s) 692
Hpy166II GTNNAC 3 cut(s) 211, 295, 541
Hpy188I TCNGA 5 cut(s) 61, 97, 332, 526, 802
Hpy188III TCNNGA 3 cut(s) 286, 919, 1030
Hpy8I GTNNAC 3 cut(s) 211, 295, 541
Hpy99I CGWCG 3 cut(s) 164, 542, 821
HpyAV CCTTC 4 cut(s) 76, 301, 396, 943
HpyCH4III ACNGT 4 cut(s) 145, 387, 469, 545
HpyCH4V TGCA 7 cut(s) 365, 473, 570, 677, 743, 761, 967
HpyF10VI GCNNNNNNNGC 5 cut(s) 241, 334, 450, 788, 1013
HpyF3I CTNAG 5 cut(s) 6, 60, 525, 984, 1074
Hsp92I GRCGYC 1 cut(s) 975
Hsp92II CATG 7 cut(s) 80, 209, 271, 281, 669, 716, 930
HspAI GCGC 4 cut(s) 23, 340, 342, 970
KflI GGGWCCC 1 cut(s) 932
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 3 cut(s) 430, 856, 993
LmnI GCTCC 4 cut(s) 132, 153, 333, 694
Lsp1109I GCAGC 7 cut(s) 349, 485, 665, 745, 767, 979, 1067
LweI GCATC 5 cut(s) 495, 557, 730, 778, 954
MaeIII GTNAC 4 cut(s) 415, 545, 953, 1060
MalI GATC 3 cut(s) 432, 858, 995
MboI GATC 3 cut(s) 430, 856, 993
MboII GAAGA 1 cut(s) 1029
MflI RGATCY 1 cut(s) 993
MhlI GDGCHC 1 cut(s) 537
MlsI TGGCCA 1 cut(s) 711
MluCI AATT 3 cut(s) 495, 637, 809
MluNI TGGCCA 1 cut(s) 711
Mox20I TGGCCA 1 cut(s) 711
Mph1103I ATGCAT 1 cut(s) 745
MscI TGGCCA 1 cut(s) 711
MseI TTAA 4 cut(s) 189, 312, 426, 498
MslI CAYNNNNRTG 2 cut(s) 717, 962
Msp20I TGGCCA 1 cut(s) 711
MspA1I CMGCKG 2 cut(s) 476, 758
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 2 cut(s) 342, 972
MwoI GCNNNNNNNGC 5 cut(s) 241, 334, 450, 788, 1013
NdeII GATC 3 cut(s) 430, 856, 993
NlaIII CATG 7 cut(s) 80, 209, 271, 281, 669, 716, 930
NlaIV GGNNCC 6 cut(s) 134, 155, 799, 901, 933, 934
NmuCI GTSAC 2 cut(s) 415, 545
NsiI ATGCAT 1 cut(s) 745
NspI RCATGY 2 cut(s) 209, 669
NspV TTCGAA 1 cut(s) 305
PauI GCGCGC 1 cut(s) 340
PceI AGGCCT 1 cut(s) 621
PciI ACATGT 1 cut(s) 665
PctI GAATGC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 659
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 9 cut(s) 339, 475, 655, 757, 760, 845, 969, 974, 1057
PpuMI RGGWCCY 1 cut(s) 932
PscI ACATGT 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 537
Psp5II RGGWCCY 1 cut(s) 932
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 6 cut(s) 134, 155, 799, 901, 933, 934
PspPI GGNCC 1 cut(s) 932
PspPPI RGGWCCY 1 cut(s) 932
PsuI RGATCY 1 cut(s) 993
PteI GCGCGC 1 cut(s) 340
PvuII CAGCTG 2 cut(s) 476, 758
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 2 cut(s) 717, 962
SacI GAGCTC 1 cut(s) 537
SalI GTCGAC 1 cut(s) 539
SaqAI TTAA 4 cut(s) 189, 312, 426, 498
SatI GCNGC 9 cut(s) 338, 474, 654, 756, 759, 844, 968, 973, 1056
Sau3AI GATC 3 cut(s) 430, 856, 993
Sau96I GGNCC 1 cut(s) 932
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 537
SfaNI GCATC 5 cut(s) 495, 557, 730, 778, 954
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 1 cut(s) 932
SmiMI CAYNNNNRTG 2 cut(s) 717, 962
Sse9I AATT 3 cut(s) 495, 637, 809
SseBI AGGCCT 1 cut(s) 621
SsiI CCGC 4 cut(s) 175, 444, 843, 972
SstI GAGCTC 1 cut(s) 537
StuI AGGCCT 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 4 cut(s) 145, 387, 469, 545
TaqI TCGA 6 cut(s) 159, 305, 464, 540, 786, 1040
TasI AATT 3 cut(s) 495, 637, 809
TauI GCSGC 2 cut(s) 846, 975
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 4 cut(s) 189, 312, 426, 498
Tru9I TTAA 4 cut(s) 189, 312, 426, 498
TseFI GTSAC 2 cut(s) 415, 545
TseI GCWGC 7 cut(s) 337, 473, 653, 755, 758, 967, 1055
Tsp45I GTSAC 2 cut(s) 415, 545
TspDTI ATGAA 1 cut(s) 592
TspGWI ACGGA 3 cut(s) 566, 876, 897
VpaK11BI GGWCC 1 cut(s) 932
XceI RCATGY 2 cut(s) 209, 669
XcmI CCANNNNNNNNNTGG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 540
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.