Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Reverse (-)

59682113 .. 59704495

Gene Structure 22383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG337300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCGTTTCAACGTCTTCAAGGAGAACGTAAAGCACGTGCACAAGGTGAACCAGATGAGTAGGCCTTACAAGCTCAAGCTGAACAAGTTTGCGGACATGACCAACCACGAGTTTGTGAACTCCGGATATGCTAACTCAAAGGTTAGCCACTACCGGTCGTTGCATGGCAGCGGGAGGATAACCGGCTTCACGCATGATCAGACCGACAATCTTCCTCAAAGTGTTGACTGGAGGAAGAATGGAGCCGTCACCGGAGTTAAAGACCAAGGACAATGCGTTAGCTGCTGGGCATTTTCGACTGTAGTGGCAGTGGAGGGCCTCAACAAAATTAAAACGAACCAGCTCGTCTCTTTATCCGAGCAGGAGCTTGTTGACTGCAATAGAGATAACGAAGGGTGTAGTGGCGGATTGATGGACAACGCATTTGATTTCATAAAGAAAACTGGTGGAATCACAAGAGAGCAGAACTACCCTTACAAAGCCGTTGATGAGTCTTGTGACTCATCCAGGATGATGAATGCTCCTCTGGTGGTAATTGATGGGTACGAAAACGTACCAGAAAATAACGAGAATGCCTTGATGAAAGCCGTGGCGAACCGACCTGTATCGGTTGCAATTGATGCTGATGCCGCTCCCGTATTTTACAGAAACGCAGCGGTGATGAGCAACCAATACGAGGCAATTGATTCCGGCGTACCAGAAATGGCCTGGATGTGGATTCTGGTCGTCGGGGAAGTGCAGGACATCGGTGGACCACGTGTCAAATCCCCAGAGCATCAGATAAAAGAGCATAAAGAGAAGGGAGAGTCTGACAAAGAAGAGGGACTACAGAGAGGGAAGGAGGGAAGAGCAGCCCCACAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

288

Amino Acids

32.04

Weight (kDa)

6.09

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	2 - 38	7.6e-11	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	71 - 224	2.3e-51	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	632
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	5 cut(s)	92, 171, 405, 630, 656
AcvI	CACGTG	2 cut(s)	37, 758
AdeI	CACNNNGTG	1 cut(s)	46
AfaI	GTAC	3 cut(s)	545, 555, 696
AfiI	CCNNNNNNNGG	2 cut(s)	676, 714
AflIII	ACRYGT	1 cut(s)	757
AgeI	ACCGGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	10, 19
AhdI	GACNNNNNGTC	1 cut(s)	758
AjnI	CCWGG	2 cut(s)	506, 707
AluBI	AGCT	5 cut(s)	73, 79, 282, 343, 367
AluI	AGCT	5 cut(s)	73, 79, 282, 343, 367
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	352
Alw44I	GTGCAC	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	3 cut(s)	62, 316, 705
ApaLI	GTGCAC	1 cut(s)	38
ApeKI	GCWGC	4 cut(s)	168, 282, 653, 851
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AsiGI	ACCGGT	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	316, 752
AsuHPI	GGTGA	3 cut(s)	58, 241, 670
AvaII	GGWCC	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	810, 842
BauI	CACGAG	1 cut(s)	107
BbrPI	CACGTG	2 cut(s)	37, 758
BbsI	GAAGAC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	180, 269, 665, 863
BccI	CCATC	2 cut(s)	406, 533
BceAI	ACGGC	3 cut(s)	230, 467, 572
BciT130I	CCWGG	2 cut(s)	508, 709
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	2 cut(s)	300, 827
BisI	GCNGC	5 cut(s)	169, 283, 630, 654, 852
BlsI	GCNGC	5 cut(s)	170, 284, 631, 655, 853
Bme1390I	CCNGG	2 cut(s)	508, 709
Bme18I	GGWCC	1 cut(s)	752
BmeRI	GACNNNNNGTC	1 cut(s)	758
BmgT120I	GGNCC	2 cut(s)	316, 752
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	508, 709
BmsI	GCATC	3 cut(s)	610, 616, 784
BpiI	GAAGAC	1 cut(s)	7
BpmI	CTGGAG	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	59
BsaAI	YACGTR	2 cut(s)	37, 758
BsaJI	CCNNGG	2 cut(s)	265, 588
BsaWI	WCCGGW	3 cut(s)	122, 153, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	676, 714
Bse118I	RCCGGY	2 cut(s)	153, 182
Bse1I	ACTGG	2 cut(s)	233, 448
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	508, 709
BseDI	CCNNGG	2 cut(s)	265, 588
BseGI	GGATG	3 cut(s)	503, 516, 717
BseLI	CCNNNNNNNGG	2 cut(s)	676, 714
BseNI	ACTGG	2 cut(s)	233, 448
BseRI	GAGGAG	1 cut(s)	513
BseSI	GKGCMC	1 cut(s)	42
BseXI	GCAGC	4 cut(s)	180, 269, 665, 863
BseYI	CCCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	758
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	3 cut(s)	64, 318, 707
BshTI	ACCGGT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	5 cut(s)	123, 154, 183, 252, 690
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	2 cut(s)	676, 714
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	837
BsmI	GAATGC	2 cut(s)	523, 577
BsnI	GGCC	3 cut(s)	64, 318, 707
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	5 cut(s)	92, 171, 405, 630, 656
BspANI	GGCC	3 cut(s)	64, 318, 707
BspEI	TCCGGA	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	841
BsrBI	CCGCTC	1 cut(s)	632
BsrFI	RCCGGY	2 cut(s)	153, 182
BsrI	ACTGG	2 cut(s)	233, 448
BssAI	RCCGGY	2 cut(s)	153, 182
BssECI	CCNNGG	2 cut(s)	265, 588
BssMI	GATC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	508, 709
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	2 cut(s)	813, 841
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBAI	YACGTR	2 cut(s)	37, 758
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	3 cut(s)	503, 516, 717
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	196
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 282, 620, 629
BstNI	CCWGG	2 cut(s)	508, 709
BstSCI	CCNGG	2 cut(s)	506, 707
BstSFI	CTRYAG	2 cut(s)	300, 827
BstSLI	GKGCMC	1 cut(s)	42
BstV1I	GCAGC	4 cut(s)	180, 269, 665, 863
BstV2I	GAAGAC	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	64, 318, 707
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	3 cut(s)	503, 516, 717
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cfr10I	RCCGGY	2 cut(s)	153, 182
Cfr13I	GGNCC	2 cut(s)	316, 752
Csp6I	GTAC	3 cut(s)	544, 554, 695
CspAI	ACCGGT	1 cut(s)	153
CviAII	CATG	3 cut(s)	97, 164, 194
CviQI	GTAC	3 cut(s)	544, 554, 695
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	46
DriI	GACNNNNNGTC	1 cut(s)	758
Eam1104I	CTCTTC	2 cut(s)	813, 841
Eam1105I	GACNNNNNGTC	1 cut(s)	758
EarI	CTCTTC	2 cut(s)	813, 841
EciI	GGCGGA	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	265
Eco147I	AGGCCT	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	752
Eco72I	CACGTG	2 cut(s)	37, 758
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	506, 707
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	3 cut(s)	100, 167, 197
FaiI	YATR	7 cut(s)	98, 129, 165, 195, 434, 792, 865
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	3 cut(s)	96, 163, 193
FauI	CCCGC	1 cut(s)	164
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	5 cut(s)	169, 283, 630, 654, 852
FokI	GGATG	3 cut(s)	490, 523, 724
Fsp4HI	GCNGC	5 cut(s)	169, 283, 630, 654, 852
GluI	GCNGC	5 cut(s)	169, 283, 630, 654, 852
GsaI	CCCAGC	1 cut(s)	289
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	3 cut(s)	64, 318, 707
HapII	CCGG	5 cut(s)	123, 154, 183, 252, 690
Hin1II	CATG	3 cut(s)	100, 167, 197
HincII	GTYRAC	2 cut(s)	226, 373
HindII	GTYRAC	2 cut(s)	226, 373
HinfI	GANTC	6 cut(s)	450, 491, 500, 686, 718, 806
HpaII	CCGG	5 cut(s)	123, 154, 183, 252, 690
HphI	GGTGA	3 cut(s)	58, 241, 670
Hpy166II	GTNNAC	6 cut(s)	40, 49, 118, 226, 373, 752
Hpy188I	TCNGA	4 cut(s)	201, 358, 780, 811
Hpy188III	TCNNGA	1 cut(s)	123
Hpy8I	GTNNAC	6 cut(s)	40, 49, 118, 226, 373, 752
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	3 cut(s)	386, 793, 832
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	5 cut(s)	12, 27, 36, 552, 757
HpyCH4V	TGCA	5 cut(s)	40, 163, 378, 614, 739
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 282, 620, 629
HpySE526I	ACGT	5 cut(s)	12, 27, 36, 552, 757
Hsp92II	CATG	3 cut(s)	100, 167, 197
Kpn2I	TCCGGA	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	841
LmnI	GCTCC	4 cut(s)	242, 364, 526, 637
Lsp1109I	GCAGC	4 cut(s)	180, 269, 665, 863
LweI	GCATC	3 cut(s)	610, 616, 784
MaeII	ACGT	5 cut(s)	12, 27, 36, 552, 757
MaeIII	GTNAC	2 cut(s)	247, 497
MalI	GATC	1 cut(s)	198
MbiI	CCGCTC	1 cut(s)	632
MboI	GATC	1 cut(s)	196
MboII	GAAGA	5 cut(s)	7, 203, 247, 830, 858
MfeI	CAATTG	2 cut(s)	615, 681
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	327, 534, 615, 681
MlyI	GAGTC	3 cut(s)	494, 500, 815
MroI	TCCGGA	1 cut(s)	122
MseI	TTAA	2 cut(s)	258, 330
MspA1I	CMGCKG	2 cut(s)	171, 656
MspI	CCGG	5 cut(s)	123, 154, 183, 252, 690
MspR9I	CCNGG	2 cut(s)	508, 709
MunI	CAATTG	2 cut(s)	615, 681
Mva1269I	GAATGC	2 cut(s)	523, 577
MvaI	CCWGG	2 cut(s)	508, 709
MwoI	GCNNNNNNNGC	4 cut(s)	70, 282, 620, 629
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	100, 167, 197
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	247, 497
PceI	AGGCCT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	841
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	2 cut(s)	523, 577
PfeI	GAWTC	3 cut(s)	450, 686, 718
PfoI	TCCNGGA	1 cut(s)	506
PinAI	ACCGGT	1 cut(s)	153
PkrI	GCNGC	5 cut(s)	170, 284, 631, 655, 853
PleI	GAGTC	3 cut(s)	494, 499, 814
PmaCI	CACGTG	2 cut(s)	37, 758
PmlI	CACGTG	2 cut(s)	37, 758
PpsI	GAGTC	3 cut(s)	494, 499, 814
Ppu21I	YACGTR	2 cut(s)	37, 758
Psp6I	CCWGG	2 cut(s)	506, 707
PspCI	CACGTG	2 cut(s)	37, 758
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	2 cut(s)	506, 707
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	316, 752
PsrI	GAACNNNNNNTAC	2 cut(s)	458, 490
RsaI	GTAC	3 cut(s)	545, 555, 696
RsaNI	GTAC	3 cut(s)	544, 554, 695
SapI	GCTCTTC	1 cut(s)	841
SaqAI	TTAA	2 cut(s)	258, 330
SatI	GCNGC	5 cut(s)	169, 283, 630, 654, 852
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	2 cut(s)	316, 752
SchI	GAGTC	3 cut(s)	494, 500, 815
ScrFI	CCNGG	2 cut(s)	508, 709
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	3 cut(s)	610, 616, 784
SfcI	CTRYAG	2 cut(s)	300, 827
SinI	GGWCC	1 cut(s)	752
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	327, 534, 615, 681
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	5 cut(s)	92, 171, 405, 630, 656
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	506, 707
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	5 cut(s)	15, 30, 39, 555, 760
TaqI	TCGA	1 cut(s)	296
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	4 cut(s)	327, 534, 615, 681
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	3 cut(s)	450, 686, 718
Tru1I	TTAA	2 cut(s)	258, 330
Tru9I	TTAA	2 cut(s)	258, 330
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	2 cut(s)	247, 497
TseI	GCWGC	4 cut(s)	168, 282, 653, 851
Tsp45I	GTSAC	2 cut(s)	247, 497
TspDTI	ATGAA	3 cut(s)	421, 530, 596
TspRI	CASTG	1 cut(s)	315
VneI	GTGCAC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.